View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11744_low_26 (Length: 239)
Name: NF11744_low_26
Description: NF11744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11744_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 34281118 - 34281047
Alignment:
| Q |
11 |
tgagcttaatggattacttacttcctccttcgtgaggagaccttaaggaagatgagcattaatttacttaaa |
82 |
Q |
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| T |
34281118 |
tgagcttaatggattacttacttcctcattcgtgaggagaccttaaggaagatgagcattaatttacttaaa |
34281047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 34289799 - 34289733
Alignment:
| Q |
22 |
gattacttacttcctccttcgtgaggagaccttaaggaagatgagcattaatttacttaaagatgac |
88 |
Q |
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| T |
34289799 |
gattacttacttcctccttcgtggggaggccttaagaaagatgagcatcaatttacttaaagatgac |
34289733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 34302186 - 34302118
Alignment:
| Q |
22 |
gattacttacttcctccttcgtgaggagaccttaaggaagatgagcattaatttacttaaagatgacgt |
90 |
Q |
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| T |
34302186 |
gattacttacttcctccttcgtggggagacgttaagaaagatgagtatcaatttacttaaaggtgacgt |
34302118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 34281038 - 34280995
Alignment:
| Q |
179 |
aattacgcaatgcatctatataatcctaattaatccccactaac |
222 |
Q |
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| T |
34281038 |
aattacgcaatgcatctatataatcctaattaatccccactaac |
34280995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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