View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11744_low_28 (Length: 226)

Name: NF11744_low_28
Description: NF11744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11744_low_28
NF11744_low_28
[»] chr8 (37 HSPs)
chr8 (117-210)||(39251912-39252005)
chr8 (40-109)||(45409846-45409915)
chr8 (7-109)||(184547-184651)
chr8 (32-103)||(10749694-10749766)
chr8 (7-109)||(22550860-22550963)
chr8 (2-82)||(34366913-34366994)
chr8 (14-109)||(36677931-36678028)
chr8 (42-114)||(31745152-31745224)
chr8 (3-82)||(39601706-39601786)
chr8 (7-88)||(15030879-15030962)
chr8 (7-88)||(45066356-45066439)
chr8 (1-54)||(26663022-26663076)
chr8 (7-82)||(41016416-41016492)
chr8 (6-67)||(8419421-8419483)
chr8 (6-67)||(32375668-32375730)
chr8 (44-113)||(45410952-45411021)
chr8 (12-82)||(483817-483889)
chr8 (1-67)||(22014263-22014330)
chr8 (12-108)||(32378921-32379020)
chr8 (12-108)||(32432876-32432975)
chr8 (12-114)||(40740876-40740979)
chr8 (6-67)||(7344551-7344613)
chr8 (6-67)||(17924277-17924339)
chr8 (40-82)||(34371875-34371917)
chr8 (12-109)||(36127347-36127445)
chr8 (3-87)||(41250063-41250148)
chr8 (12-53)||(41274623-41274665)
chr8 (40-114)||(44885685-44885759)
chr8 (42-87)||(20854614-20854659)
chr8 (1-67)||(36677729-36677797)
chr8 (40-113)||(39252022-39252095)
chr8 (1-56)||(1056190-1056246)
chr8 (8-40)||(2146953-2146985)
chr8 (12-82)||(22519562-22519634)
chr8 (12-51)||(22577698-22577738)
chr8 (12-51)||(40077250-40077290)
chr8 (12-51)||(42602493-42602533)
[»] chr7 (26 HSPs)
chr7 (3-109)||(17834462-17834569)
chr7 (3-88)||(42508018-42508105)
chr7 (3-101)||(15074219-15074319)
chr7 (7-101)||(18105355-18105451)
chr7 (16-109)||(7975613-7975708)
chr7 (7-82)||(15070356-15070433)
chr7 (12-114)||(38555413-38555516)
chr7 (7-87)||(17840885-17840966)
chr7 (1-101)||(41884115-41884217)
chr7 (1-53)||(35606820-35606873)
chr7 (6-67)||(45767855-45767917)
chr7 (12-82)||(9365680-9365752)
chr7 (7-109)||(10098112-10098216)
chr7 (12-82)||(10098367-10098439)
chr7 (10-113)||(45256958-45257062)
chr7 (40-87)||(13921293-13921340)
chr7 (1-40)||(34738409-34738448)
chr7 (1-51)||(47776365-47776416)
chr7 (32-109)||(10516994-10517072)
chr7 (6-67)||(30791002-30791064)
chr7 (15-60)||(37345097-37345143)
chr7 (12-88)||(17838646-17838723)
chr7 (12-60)||(30355239-30355288)
chr7 (12-87)||(43032970-43033047)
chr7 (12-51)||(9367724-9367764)
chr7 (12-51)||(42499442-42499482)
[»] chr3 (54 HSPs)
chr3 (15-109)||(8475801-8475896)
chr3 (1-109)||(42165138-42165247)
chr3 (6-109)||(42166404-42166508)
chr3 (7-109)||(4015124-4015227)
chr3 (32-109)||(4331840-4331918)
chr3 (1-109)||(4008312-4008421)
chr3 (7-109)||(41844359-41844463)
chr3 (12-114)||(14043898-14044001)
chr3 (2-82)||(600534-600615)
chr3 (12-87)||(43476188-43476265)
chr3 (1-66)||(35743571-35743637)
chr3 (1-54)||(46697741-46697795)
chr3 (12-88)||(4004803-4004880)
chr3 (7-87)||(48246409-48246490)
chr3 (16-87)||(55385134-55385206)
chr3 (42-113)||(52387755-52387826)
chr3 (12-109)||(2062361-2062459)
chr3 (1-54)||(49144445-49144499)
chr3 (5-54)||(50477210-50477260)
chr3 (6-54)||(30943219-30943268)
chr3 (7-87)||(43478825-43478906)
chr3 (47-108)||(52391428-52391489)
chr3 (1-67)||(3501883-3501951)
chr3 (12-87)||(19440253-19440329)
chr3 (10-109)||(41612343-41612443)
chr3 (12-82)||(46406591-46406663)
chr3 (12-82)||(49138615-49138687)
chr3 (12-114)||(7941080-7941183)
chr3 (1-51)||(49268834-49268885)
chr3 (7-87)||(2645452-2645534)
chr3 (12-88)||(2647699-2647777)
chr3 (1-54)||(2967914-2967968)
chr3 (6-67)||(3953209-3953271)
chr3 (2-40)||(4004891-4004929)
chr3 (6-67)||(6745320-6745382)
chr3 (6-67)||(8156525-8156587)
chr3 (40-110)||(16611074-16611144)
chr3 (40-110)||(22048109-22048179)
chr3 (12-88)||(36134319-36134396)
chr3 (14-51)||(48888773-48888811)
chr3 (12-88)||(54389790-54389868)
chr3 (12-103)||(1293357-1293450)
chr3 (7-82)||(3493590-3493667)
chr3 (7-82)||(3497284-3497361)
chr3 (32-96)||(11094100-11094164)
chr3 (1-113)||(34543125-34543238)
chr3 (7-51)||(34691658-34691703)
chr3 (7-67)||(41844166-41844227)
chr3 (12-82)||(2950367-2950439)
chr3 (12-51)||(13896876-13896916)
chr3 (12-51)||(34049113-34049153)
chr3 (12-82)||(34051313-34051385)
chr3 (12-51)||(41579724-41579764)
chr3 (12-51)||(41803031-41803071)
[»] chr2 (40 HSPs)
chr2 (1-109)||(39947574-39947683)
chr2 (7-88)||(22003396-22003479)
chr2 (2-87)||(7189941-7190027)
chr2 (1-101)||(28468623-28468725)
chr2 (32-109)||(41273268-41273346)
chr2 (8-88)||(28419403-28419484)
chr2 (1-59)||(30493384-30493443)
chr2 (6-87)||(3943186-3943268)
chr2 (2-54)||(7267434-7267487)
chr2 (14-82)||(28477069-28477138)
chr2 (7-88)||(23346776-23346858)
chr2 (12-88)||(17424127-17424205)
chr2 (7-88)||(23347323-23347405)
chr2 (1-50)||(43536136-43536186)
chr2 (12-82)||(3935864-3935936)
chr2 (12-87)||(35493341-35493417)
chr2 (12-82)||(42499787-42499859)
chr2 (40-103)||(43312712-43312776)
chr2 (42-77)||(10829060-10829095)
chr2 (1-67)||(17420585-17420652)
chr2 (40-87)||(29074032-29074079)
chr2 (3-49)||(32956334-32956381)
chr2 (1-67)||(44100787-44100854)
chr2 (12-81)||(2271737-2271807)
chr2 (6-67)||(5351726-5351788)
chr2 (2-87)||(10825215-10825301)
chr2 (6-67)||(18000249-18000311)
chr2 (7-108)||(43258728-43258830)
chr2 (9-49)||(2648152-2648193)
chr2 (7-51)||(25184825-25184870)
chr2 (53-114)||(33416099-33416160)
chr2 (40-88)||(43619171-43619220)
chr2 (7-51)||(43943722-43943767)
chr2 (7-108)||(213447-213551)
chr2 (12-82)||(17426365-17426437)
chr2 (7-108)||(18003267-18003371)
chr2 (12-51)||(34921759-34921799)
chr2 (12-51)||(43982232-43982272)
chr2 (42-113)||(44100672-44100744)
chr2 (7-39)||(45435201-45435233)
[»] scaffold0180 (1 HSPs)
scaffold0180 (12-109)||(15622-15720)
[»] chr6 (29 HSPs)
chr6 (2-85)||(11840240-11840324)
chr6 (7-109)||(26351091-26351194)
chr6 (7-109)||(26712022-26712126)
chr6 (2-109)||(13382603-13382712)
chr6 (10-109)||(3501126-3501226)
chr6 (6-88)||(29076317-29076400)
chr6 (6-88)||(29109850-29109933)
chr6 (6-88)||(29111290-29111373)
chr6 (7-114)||(9048045-9048153)
chr6 (2-52)||(18351633-18351684)
chr6 (12-80)||(11694027-11694097)
chr6 (1-54)||(27616745-27616799)
chr6 (11-60)||(30258314-30258364)
chr6 (7-108)||(32223508-32223610)
chr6 (7-82)||(28249886-28249963)
chr6 (12-82)||(6207060-6207132)
chr6 (5-53)||(24085278-24085326)
chr6 (42-97)||(26422967-26423022)
chr6 (1-40)||(31768798-31768837)
chr6 (12-88)||(6204822-6204900)
chr6 (12-88)||(22305103-22305181)
chr6 (32-109)||(26349950-26350027)
chr6 (12-108)||(9049084-9049181)
chr6 (7-51)||(13388703-13388748)
chr6 (12-88)||(15888800-15888877)
chr6 (7-67)||(26712218-26712279)
chr6 (7-51)||(31771736-31771781)
chr6 (18-114)||(32222499-32222596)
chr6 (12-51)||(11691827-11691867)
[»] chr4 (45 HSPs)
chr4 (7-87)||(39590563-39590644)
chr4 (1-87)||(21022877-21022964)
chr4 (14-80)||(26792246-26792314)
chr4 (7-109)||(39773378-39773482)
chr4 (7-109)||(54634010-54634114)
chr4 (32-109)||(28235581-28235659)
chr4 (17-109)||(52529187-52529281)
chr4 (3-101)||(30726732-30726832)
chr4 (7-109)||(37563275-37563379)
chr4 (7-82)||(56565759-56565835)
chr4 (42-109)||(16473711-16473778)
chr4 (12-82)||(28234418-28234489)
chr4 (1-54)||(31425307-31425361)
chr4 (1-54)||(40358269-40358323)
chr4 (10-111)||(44680072-44680174)
chr4 (1-101)||(49169086-49169188)
chr4 (7-87)||(16984156-16984237)
chr4 (6-109)||(26932558-26932663)
chr4 (1-96)||(46254437-46254533)
chr4 (7-109)||(34528139-34528242)
chr4 (2-80)||(51492075-51492154)
chr4 (40-82)||(3183983-3184025)
chr4 (3-67)||(1089575-1089640)
chr4 (7-87)||(16983519-16983600)
chr4 (40-109)||(44795034-44795103)
chr4 (32-87)||(50905154-50905210)
chr4 (12-51)||(55407793-55407833)
chr4 (19-88)||(28081454-28081524)
chr4 (40-82)||(3186093-3186135)
chr4 (12-88)||(6178110-6178188)
chr4 (2-51)||(15995755-15995805)
chr4 (2-51)||(19069220-19069270)
chr4 (12-80)||(41793367-41793437)
chr4 (1-54)||(41800926-41800980)
chr4 (12-88)||(49094079-49094157)
chr4 (8-87)||(20208507-20208587)
chr4 (7-87)||(21015736-21015817)
chr4 (40-88)||(31242211-31242260)
chr4 (12-51)||(958594-958634)
chr4 (12-51)||(1041968-1042008)
chr4 (12-82)||(6175878-6175950)
chr4 (12-51)||(9890027-9890067)
chr4 (12-51)||(11494576-11494616)
chr4 (12-40)||(44561330-44561358)
chr4 (12-67)||(49563857-49563913)
[»] chr1 (40 HSPs)
chr1 (1-82)||(22524128-22524210)
chr1 (4-109)||(31783707-31783813)
chr1 (3-87)||(2425676-2425761)
chr1 (7-90)||(19161886-19161970)
chr1 (1-67)||(8548658-8548725)
chr1 (12-82)||(18609895-18609966)
chr1 (15-109)||(45977701-45977796)
chr1 (40-82)||(97952-97994)
chr1 (1-54)||(3728765-3728819)
chr1 (42-108)||(14985314-14985380)
chr1 (7-108)||(46217313-46217415)
chr1 (2-66)||(15051338-15051403)
chr1 (6-67)||(3943991-3944053)
chr1 (6-67)||(3993837-3993899)
chr1 (1-54)||(26879284-26879338)
chr1 (1-54)||(29622413-29622467)
chr1 (42-83)||(21699885-21699926)
chr1 (12-51)||(6557948-6557988)
chr1 (6-53)||(50117840-50117888)
chr1 (1-82)||(19928800-19928883)
chr1 (13-87)||(51271592-51271667)
chr1 (7-79)||(13633873-13633947)
chr1 (12-88)||(13636122-13636200)
chr1 (6-67)||(20353929-20353991)
chr1 (40-97)||(22397806-22397864)
chr1 (7-108)||(29424356-29424458)
chr1 (7-108)||(29425331-29425433)
chr1 (6-67)||(38771646-38771708)
chr1 (2-87)||(46886378-46886463)
chr1 (12-60)||(8460097-8460146)
chr1 (12-60)||(36072393-36072442)
chr1 (15-55)||(38119614-38119655)
chr1 (42-87)||(50343999-50344044)
chr1 (7-51)||(51289955-51290000)
chr1 (15-54)||(11197426-11197466)
chr1 (12-51)||(26633560-26633600)
chr1 (7-108)||(31945856-31945960)
chr1 (12-51)||(44336282-44336322)
chr1 (12-40)||(50113352-50113380)
chr1 (12-51)||(52802163-52802203)
[»] scaffold0199 (2 HSPs)
scaffold0199 (12-80)||(10656-10725)
scaffold0199 (12-88)||(12388-12465)
[»] chr5 (25 HSPs)
chr5 (12-109)||(13837698-13837797)
chr5 (3-82)||(7757327-7757407)
chr5 (16-82)||(11346009-11346076)
chr5 (1-67)||(28238156-28238223)
chr5 (2-66)||(37814600-37814665)
chr5 (12-88)||(42912878-42912955)
chr5 (7-88)||(27659935-27660018)
chr5 (14-87)||(38855713-38855788)
chr5 (7-87)||(7762239-7762320)
chr5 (12-82)||(19035239-19035311)
chr5 (1-60)||(19041106-19041166)
chr5 (12-51)||(25497544-25497584)
chr5 (7-53)||(540957-541004)
chr5 (2-56)||(28388509-28388564)
chr5 (14-87)||(5773-5847)
chr5 (4-53)||(8577005-8577055)
chr5 (6-67)||(14280894-14280956)
chr5 (12-88)||(19037470-19037548)
chr5 (1-54)||(28876673-28876727)
chr5 (2-51)||(34122557-34122607)
chr5 (40-82)||(42942480-42942522)
chr5 (42-87)||(5200387-5200432)
chr5 (13-81)||(42937195-42937264)
chr5 (12-51)||(8047-8087)
chr5 (12-51)||(4204211-4204251)
[»] scaffold0634 (1 HSPs)
scaffold0634 (1-109)||(7392-7502)
[»] scaffold0293 (1 HSPs)
scaffold0293 (7-113)||(717-825)
[»] scaffold0011 (2 HSPs)
scaffold0011 (15-109)||(236263-236358)
scaffold0011 (2-49)||(236224-236272)
[»] scaffold0494 (2 HSPs)
scaffold0494 (7-87)||(5327-5409)
scaffold0494 (6-49)||(892-936)
[»] scaffold0201 (1 HSPs)
scaffold0201 (2-51)||(22436-22486)
[»] scaffold0744 (1 HSPs)
scaffold0744 (6-54)||(417-466)
[»] scaffold0101 (1 HSPs)
scaffold0101 (3-67)||(41013-41078)
[»] scaffold0038 (1 HSPs)
scaffold0038 (7-82)||(50048-50125)
[»] scaffold0014 (1 HSPs)
scaffold0014 (12-82)||(84581-84653)
[»] scaffold0283 (1 HSPs)
scaffold0283 (40-114)||(1642-1716)
[»] scaffold0184 (1 HSPs)
scaffold0184 (3-81)||(18284-18363)
[»] scaffold0078 (1 HSPs)
scaffold0078 (3-81)||(54481-54560)
[»] scaffold0065 (1 HSPs)
scaffold0065 (12-114)||(65287-65391)


Alignment Details
Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 37)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 117 - 210
Target Start/End: Complemental strand, 39252005 - 39251912
Alignment:
Q  117 aattctcaaatatgagatacccttaatattgatttgcattaggattatcccgaaagaaaatttgtttggcgctgctgcggtgttagctgaactt 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  39252005 aattctcaaatatgagatacccttaatattgatttgcattaggattatccggaaagaaaatttgtttggcgctgctgcggtgttagctgaactt 39251912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 109
Target Start/End: Complemental strand, 45409915 - 45409846
Alignment:
Q  40 gcagttaactgccgctgatttactaaaacttcggcagttaactaccgaaagatattttcgtaaattactc 109  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||| |  ||||||||||| |||||    
T  45409915 gcagttaactgccgccgatttactaaaacttcggcagttaactgccgaagggcattttcgtaaagtactc 45409846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 7 - 109
Target Start/End: Original strand, 184547 - 184651
Alignment:
Q  7 tttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttact-aaaacttcggcagttaactaccgaaagatattttcgtaaat 104  Q
    |||| ||||||||||||||||||| |||||||| ||||||||||||||| | ||| || ||||||||||||||| ||||||||| |  |||| ||||| |    
T  184547 tttcctcggcagttaactaccgaggttttcctcggcagttaactgccgccggtttcctaaaaacttcggcagtttactaccgaagggcatttccgtaact 184646  T
Q  105 tactc 109  Q
    |||||    
T  184647 tactc 184651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 32 - 103
Target Start/End: Original strand, 10749694 - 10749766
Alignment:
Q  32 ttttcctcg-cagttaactgccgctgatttactaaaacttcggcagttaactaccgaaagatattttcgtaaa 103  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||| |  |||||||||||    
T  10749694 ttttcctcggcagttaactgccgctggtttactaaaacttcggcagttaactgccgaagggcattttcgtaaa 10749766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 7 - 109
Target Start/End: Original strand, 22550860 - 22550963
Alignment:
Q  7 tttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttactaaaacttcggcagttaactaccgaaagatattttcgtaaatt 105  Q
    |||| ||||||||||||||||||| |||||||| |||||||||||| || |  || ||||||||||||||||||||| ||||| |  ||||  |||||||    
T  22550860 tttcctcggcagttaactaccgaggttttcctcggcagttaactgcagccggatttctaaaacttcggcagttaactgccgaagggcatttaggtaaatt 22550959  T
Q  106 actc 109  Q
    ||||    
T  22550960 actc 22550963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 34366994 - 34366913
Alignment:
Q  2 tcagatttcatcggcagttaactaccgagattttcctc-gcagttaactgccg-ctgatttactaaaacttcggcagttaact 82  Q
    ||||||||||||||||||||||||||||| |||||||| | |||||||||| | | |||||| ||||||||||||||||||||    
T  34366994 tcagatttcatcggcagttaactaccgaggttttcctcggaagttaactgcagccggattta-taaaacttcggcagttaact 34366913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 109
Target Start/End: Original strand, 36677931 - 36678028
Alignment:
Q  14 ggcagttaactaccgagattttcctc-gcagttaactgccgctgatttact-aaaacttcggcagttaactaccgaaagatattttcgtaaattactc 109  Q
    ||||||||||||||||| |||||||| ||||||||||||||| | ||| || ||||||||||||||| ||||||||| |  |||| ||||| ||||||    
T  36677931 ggcagttaactaccgaggttttcctcggcagttaactgccgccggtttcctaaaaacttcggcagtttactaccgaagggcatttccgtaacttactc 36678028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 114
Target Start/End: Complemental strand, 31745224 - 31745152
Alignment:
Q  42 agttaactgccgctgatttactaaaacttcggcagttaactaccgaaagatattttcgtaaattactcatgtt 114  Q
    |||||||||| |||| ||| ||||||||||||||||||||||||||| | |||||  ||||||||||| ||||    
T  31745224 agttaactgcagctgtttttctaaaacttcggcagttaactaccgaagggtatttgggtaaattactcgtgtt 31745152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 39601786 - 39601706
Alignment:
Q  3 cagatttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttactaaaacttcggcagttaact 82  Q
    |||||||| ||||||||||||| ||||| |||||||| |||||||||||| || |  || |||||||||||||||||||||    
T  39601786 cagatttcctcggcagttaactcccgaggttttcctcggcagttaactgcagccggatttctaaaacttcggcagttaact 39601706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 7 - 88
Target Start/End: Complemental strand, 15030962 - 15030879
Alignment:
Q  7 tttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttact-aaaacttcggcagttaactaccgaa 88  Q
    |||| ||||||||||||| ||||| |||||||| ||||||||||||||| | ||| || ||||||||||||||| |||||||||    
T  15030962 tttcctcggcagttaactcccgaggttttcctcggcagttaactgccgccggtttcctaaaaacttcggcagtttactaccgaa 15030879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 7 - 88
Target Start/End: Original strand, 45066356 - 45066439
Alignment:
Q  7 tttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttact-aaaacttcggcagttaactaccgaa 88  Q
    |||| ||||||||||| ||||||| |||||||| ||||||||||||||| | ||| || ||||||||||||||| |||||||||    
T  45066356 tttcctcggcagttaattaccgaggttttcctcggcagttaactgccgccggtttcctaaaaacttcggcagtttactaccgaa 45066439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 26663022 - 26663076
Alignment:
Q  1 ttcagatttcatcggcagttaactaccgagattttcctc-gcagttaactgccgc 54  Q
    |||||||||| ||||||||||||||||||| |||||||| |||||||||||||||    
T  26663022 ttcagatttcctcggcagttaactaccgaggttttcctcggcagttaactgccgc 26663076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 41016492 - 41016416
Alignment:
Q  7 tttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttactaaaacttcggcagttaact 82  Q
    |||| ||||||||||||||||||| |||||||| |||||||||||| | ||  || |||||||||||| ||||||||    
T  41016492 tttcctcggcagttaactaccgaggttttcctcggcagttaactgcagttggatttctaaaacttcggtagttaact 41016416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 8419483 - 8419421
Alignment:
Q  6 atttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttactaaaa 67  Q
    ||||| ||||||||||||||||||| |||||||| ||||||||||||||| | ||| ||||||    
T  8419483 atttcctcggcagttaactaccgaggttttcctcggcagttaactgccgccggtttcctaaaa 8419421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 32375730 - 32375668
Alignment:
Q  6 atttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttactaaaa 67  Q
    ||||| ||||||||||||||||||| |||||||| ||||||||||||||| | ||| ||||||    
T  32375730 atttcctcggcagttaactaccgaggttttcctcggcagttaactgccgccggtttcctaaaa 32375668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 113
Target Start/End: Original strand, 45410952 - 45411021
Alignment:
Q  44 ttaactgccgctgatttactaaaacttcggcagttaactaccgaaagatattttcgtaaattactcatgt 113  Q
    ||||||||||| | ||||||||||||||  ||||||||| | ||| || ||||||||||| |||||||||    
T  45410952 ttaactgccgccggtttactaaaacttccacagttaactgctgaaggacattttcgtaaagtactcatgt 45411021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 483889 - 483817
Alignment:
Q  12 tcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttact-aaaacttcggcagttaact 82  Q
    ||||||||||||||||||| |||||||| ||| ||||||||||| | | | || |||||||||||||||||||    
T  483889 tcggcagttaactaccgaggttttcctcggcacttaactgccgccggtgtcctaaaaacttcggcagttaact 483817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 22014330 - 22014263
Alignment:
Q  1 ttcagatttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttactaaaa 67  Q
    |||| ||||| |||| |||||||||||||| |||||||| ||||||||||||||| | ||| ||||||    
T  22014330 ttcatatttcctcggtagttaactaccgaggttttcctcggcagttaactgccgccggtttcctaaaa 22014263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 108
Target Start/End: Original strand, 32378921 - 32379020
Alignment:
Q  12 tcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttact-aaaacttcggcagttaactaccga-aagatattttcgtaaattact 108  Q
    |||||||||||||||||||   |||||| | ||||||||||||||| ||| || ||||| ||||||||||||| |||| | | ||||| |||||||||||    
T  32378921 tcggcagttaactaccgaggaattcctcggtagttaactgccgctggtttcctaaaaacctcggcagttaactgccgagagggtatttgcgtaaattact 32379020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 108
Target Start/End: Original strand, 32432876 - 32432975
Alignment:
Q  12 tcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttact-aaaacttcggcagttaactaccga-aagatattttcgtaaattact 108  Q
    |||||||||||||||||||   |||||| | ||||||||||||||| ||| || ||||| ||||||||||||| |||| | | ||||| |||||||||||    
T  32432876 tcggcagttaactaccgaggaattcctcggtagttaactgccgctggtttcctaaaaacctcggcagttaactgccgagagggtatttgcgtaaattact 32432975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 40740979 - 40740876
Alignment:
Q  12 tcggcagttaactaccgagattttcctcg-cagttaactgccgctgatttactaaaacttcggcagttaactaccgaaagatattttcgtaaattactca 110  Q
    ||||||||||||| ||||  ||||||||| ||||||||||| || | ||   ||||| ||||||||||||||  |||| |||||||  |||||||||||     
T  40740979 tcggcagttaactgccgaagttttcctcggcagttaactgcagccggttctttaaaatttcggcagttaactgtcgaaggatatttgggtaaattactcg 40740880  T
Q  111 tgtt 114  Q
    ||||    
T  40740879 tgtt 40740876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 7344551 - 7344613
Alignment:
Q  6 atttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttactaaaa 67  Q
    ||||| ||||||||||||| ||||| |||||||| ||||||||||||||| | ||| ||||||    
T  7344551 atttcctcggcagttaactcccgaggttttcctcggcagttaactgccgccggtttcctaaaa 7344613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 17924277 - 17924339
Alignment:
Q  6 atttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttactaaaa 67  Q
    ||||| ||||||||||||||||||| |||| ||| ||||||||||||||| | ||| ||||||    
T  17924277 atttcctcggcagttaactaccgaggtttttctcggcagttaactgccgccggtttcctaaaa 17924339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 34371875 - 34371917
Alignment:
Q  40 gcagttaactgccgctgatttactaaaacttcggcagttaact 82  Q
    |||||| |||||||| | |||||||||||||||||||||||||    
T  34371875 gcagtttactgccgccggtttactaaaacttcggcagttaact 34371917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 36127445 - 36127347
Alignment:
Q  12 tcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttactaaaacttcggcagttaactaccgaaagatattttcgtaaattactc 109  Q
    |||| ||||||||  ||||||||||||| |||||||||| | || | ||| ||||||||||| ||||||||| |||| |||  |||  |||||||||||    
T  36127445 tcggtagttaactgtcgagattttcctcagcagttaacttcagccggttttctaaaacttcgtcagttaactgccgagagacgtttaggtaaattactc 36127347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 41250063 - 41250148
Alignment:
Q  3 cagatttcatcggcagttaactaccgagattttcctc-gcagttaactgccg-ctgatttactaaaacttcggcagttaactaccga 87  Q
    |||||||| |||||||||||| | |||| |||||||| ||||| |||||| | | ||||| ||||||||||| ||||||||||||||    
T  41250063 cagatttcctcggcagttaaccatcgaggttttcctcggcagtaaactgcagtcggattt-ctaaaacttcgacagttaactaccga 41250148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 41274665 - 41274623
Alignment:
Q  12 tcggcagttaactaccgagattttcctc-gcagttaactgccg 53  Q
    |||||||||||||||||||||||||||| ||| ||||||||||    
T  41274665 tcggcagttaactaccgagattttcctcggcaattaactgccg 41274623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 114
Target Start/End: Complemental strand, 44885759 - 44885685
Alignment:
Q  40 gcagttaactgccgctgatttactaaaacttcggcagttaactaccgaaagatattttcgtaaattactcatgtt 114  Q
    ||||||||||||  | ||||| ||||||||||  ||||||||| |||||||||||||   |||||||||| ||||    
T  44885759 gcagttaactgcaaccgattttctaaaacttcaacagttaactgccgaaagatatttaaataaattactcgtgtt 44885685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 20854659 - 20854614
Alignment:
Q  42 agttaactgccgctgatttactaaaacttcggcagttaactaccga 87  Q
    ||||||||||||| | ||| ||||||||||||||||||||| ||||    
T  20854659 agttaactgccgccggttttctaaaacttcggcagttaactgccga 20854614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 36677797 - 36677729
Alignment:
Q  1 ttcagatttcatcggcagttaactaccgagattttcctc--gcagttaactgccgctgatttactaaaa 67  Q
    |||| ||||| |||| |||||||||||||| ||||||||  ||||||||||||||| | ||| ||||||    
T  36677797 ttcatatttcctcggtagttaactaccgaggttttcctccggcagttaactgccgccggtttcctaaaa 36677729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 113
Target Start/End: Complemental strand, 39252095 - 39252022
Alignment:
Q  40 gcagttaactgccgctgatttactaaaacttcggcagttaactaccgaaagatattttcgtaaattactcatgt 113  Q
    ||||||||||||||| | |||||||| ||||| |||||| ||| ||||| |  ||||||||||| ||||| |||    
T  39252095 gcagttaactgccgccggtttactaatacttcagcagttgactgccgaagggcattttcgtaaagtactcgtgt 39252022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 1056190 - 1056246
Alignment:
Q  1 ttcagatttcatcggcagttaactaccgagattttcctcg-cagttaactgccgctg 56  Q
    |||||||||| || |||||||||| || || ||||||||| ||||||||||||||||    
T  1056190 ttcagatttcctcagcagttaactcccaaggttttcctcggcagttaactgccgctg 1056246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 2146953 - 2146985
Alignment:
Q  8 ttcatcggcagttaactaccgagattttcctcg 40  Q
    ||||||||||||||||||||||| |||||||||    
T  2146953 ttcatcggcagttaactaccgaggttttcctcg 2146985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 22519562 - 22519634
Alignment:
Q  12 tcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttact-aaaacttcggcagttaact 82  Q
    ||||||||||||||||||| |||||||| ||| ||||||||||| | | | || |||||||||| ||||||||    
T  22519562 tcggcagttaactaccgaggttttcctcggcacttaactgccgccggtgtcctaaaaacttcggtagttaact 22519634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 22577738 - 22577698
Alignment:
Q  12 tcggcagttaactaccgagattttcctcg-cagttaactgc 51  Q
    ||||||||||||||||||| ||||||||| |||||||||||    
T  22577738 tcggcagttaactaccgaggttttcctcgacagttaactgc 22577698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 51
Target Start/End: Original strand, 40077250 - 40077290
Alignment:
Q  12 tcggcagttaactaccgagattttcctc-gcagttaactgc 51  Q
    ||||||||||||||||||| |||||||| ||||||||||||    
T  40077250 tcggcagttaactaccgaggttttcctcggcagttaactgc 40077290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 42602533 - 42602493
Alignment:
Q  12 tcggcagttaactaccgagattttcctc-gcagttaactgc 51  Q
    ||||||||||||||||||| |||||||| ||||||||||||    
T  42602533 tcggcagttaactaccgaggttttcctcggcagttaactgc 42602493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 109
Target Start/End: Complemental strand, 17834569 - 17834462
Alignment:
Q  3 cagatttcatcggcagttaactaccgagattttcctcg-cagttaactgccgctgatttactaaaacttcggcagttaactaccgaaagatattttcgta 101  Q
    |||||||| ||||||||||||||||||  ||||||||| |||||||||||||| | ||||||||||||||||||||||||| ||||| |  |||||| ||    
T  17834569 cagatttcctcggcagttaactaccgaagttttcctcggcagttaactgccgccggtttactaaaacttcggcagttaactgccgaagggcattttcata 17834470  T
Q  102 aattactc 109  Q
    ||||||||    
T  17834469 aattactc 17834462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 88
Target Start/End: Original strand, 42508018 - 42508105
Alignment:
Q  3 cagatttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttact-aaaacttcggcagttaactaccgaa 88  Q
    |||||||| ||||||||||||||| |||||||||||| ||||||||||||||| | ||| || ||||||||||||||| |||||||||    
T  42508018 cagatttcctcggcagttaactactgagattttcctcagcagttaactgccgccggtttcctaaaaacttcggcagtttactaccgaa 42508105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 101
Target Start/End: Original strand, 15074219 - 15074319
Alignment:
Q  3 cagatttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttactaa-aacttcggcagttaactaccgaaagatattttcgt 100  Q
    |||||||| ||| ||||||||||||||| |||||||| ||||||||||||||| | ||| |||| ||||||||||||| ||||||||| |  ||||||||    
T  15074219 cagatttcctcgacagttaactaccgaggttttcctcggcagttaactgccgccggtttcctaagaacttcggcagtttactaccgaagggcattttcgt 15074318  T
Q  101 a 101  Q
    |    
T  15074319 a 15074319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 7 - 101
Target Start/End: Complemental strand, 18105451 - 18105355
Alignment:
Q  7 tttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttact-aaaacttcggcagttaactaccgaaagatattttcgta 101  Q
    |||| ||||||||||||||||||| |||||||| ||||||||||||||| | ||| || ||||||||||||||| ||||||||| || |||| ||||    
T  18105451 tttcctcggcagttaactaccgaggttttcctcggcagttaactgccgccggtttcctaaaaacttcggcagtttactaccgaaggacatttccgta 18105355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 7975613 - 7975708
Alignment:
Q  16 cagttaactaccgagattttcctcg-cagttaactgccgctgatttactaaaa-cttcggcagttaactaccgaaagatattttcgtaaattactc 109  Q
    |||||| |||||||| ||||||||| |||||||||||||| | |||||||||| ||||||||||| ||| ||||| || ||||||||||| |||||    
T  7975613 cagttacctaccgaggttttcctcggcagttaactgccgccggtttactaaaaacttcggcagtttactgccgaaggacattttcgtaaagtactc 7975708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 15070433 - 15070356
Alignment:
Q  7 tttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttac-taaaacttcggcagttaact 82  Q
    |||| ||||||||||||||||||| |||||||| ||||||||||||||| ||||| | | ||||||||||||||||||    
T  15070433 tttcctcggcagttaactaccgaggttttcctcggcagttaactgccgccgatttccttcaaacttcggcagttaact 15070356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 38555413 - 38555516
Alignment:
Q  12 tcggcagttaactaccgagattttcctcg-cagttaactgccgctgatttactaaaacttcggcagttaactaccgaaagatattttcgtaaattactca 110  Q
    ||||||||||||| ||||  ||||||||| ||||||||||| |||| ||   ||||| |||||||||||||| ||||| |||||||  |||||||||||     
T  38555413 tcggcagttaactgccgaagttttcctcggcagttaactgcagctggttctttaaaatttcggcagttaactgccgaaggatatttgagtaaattactcg 38555512  T
Q  111 tgtt 114  Q
    ||||    
T  38555513 tgtt 38555516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 17840885 - 17840966
Alignment:
Q  7 tttcatcggcagttaactaccgagattttcctc-gcagttaactgccg-ctgatttactaaaacttcggcagttaactaccga 87  Q
    |||| ||||||||||||||||||| |||||||| |||||||||||| | | ||||| ||||||||||||||||||||| ||||    
T  17840885 tttcctcggcagttaactaccgaggttttcctcggcagttaactgcagtcggattt-ctaaaacttcggcagttaactgccga 17840966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 41884115 - 41884217
Alignment:
Q  1 ttcagatttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttact-aaaacttcggcagttaactaccgaaagatattttc 98  Q
    |||||||||| ||||||||||||| ||||| |||||||| ||||||||||||||| | ||| || |||||||||| ||  |||| ||||| || ||||||    
T  41884115 ttcagatttcctcggcagttaacttccgaggttttcctcggcagttaactgccgccggtttcctaaaaacttcggtagcaaactgccgaaggacattttc 41884214  T
Q  99 gta 101  Q
    |||    
T  41884215 gta 41884217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 35606873 - 35606820
Alignment:
Q  1 ttcagatttcatcggcagttaactaccgagattttcctc-gcagttaactgccg 53  Q
    |||||||||| ||||||||||||||||||| |||||||| ||||||||||||||    
T  35606873 ttcagatttcctcggcagttaactaccgaggttttcctcggcagttaactgccg 35606820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 45767855 - 45767917
Alignment:
Q  6 atttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttactaaaa 67  Q
    ||||| ||||||||||||||||||| |||||||| ||||||||||||||| | ||| ||||||    
T  45767855 atttcctcggcagttaactaccgaggttttcctcggcagttaactgccgccggtttcctaaaa 45767917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 9365752 - 9365680
Alignment:
Q  12 tcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttact-aaaacttcggcagttaact 82  Q
    ||||||||||||||||||| |||||||| ||| ||||||||||| | | | || |||||||||||||||||||    
T  9365752 tcggcagttaactaccgaggttttcctcggcacttaactgccgccggtgtcctaaaaacttcggcagttaact 9365680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 109
Target Start/End: Original strand, 10098112 - 10098216
Alignment:
Q  7 tttcatcggcagttaactaccgagattttcctcg-cagttaactgccgctgatttactaaaa-cttcggcagttaactaccgaaagatattttcgtaaat 104  Q
    |||| ||| ||||||||| ||||| ||||||||| ||||||||||| || | ||| |||||| ||||||||||| ||||||||| |  |||| ||||| |    
T  10098112 tttcctcgtcagttaactcccgaggttttcctcggcagttaactgcagccggtttcctaaaaacttcggcagtttactaccgaagggcatttccgtaact 10098211  T
Q  105 tactc 109  Q
    |||||    
T  10098212 tactc 10098216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 10098439 - 10098367
Alignment:
Q  12 tcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttact-aaaacttcggcagttaact 82  Q
    ||||||||||||||||||| |||||||| ||| ||||||||||| | | | || |||||||||||||||||||    
T  10098439 tcggcagttaactaccgaggttttcctcggcacttaactgccgccggtgtcctaaaaacttcggcagttaact 10098367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 113
Target Start/End: Complemental strand, 45257062 - 45256958
Alignment:
Q  10 catcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttactaaaacttcggcagttaactaccgaaagatattttcgtaaattact 108  Q
    ||||||||||||||| |||||    ||||| | ||||| ||||||| | ||||||||||||||| || |||||| ||||| || ||||  ||||||||||    
T  45257062 catcggcagttaactgccgaggaaatcctcaggagttagctgccgccggtttactaaaacttcgacaattaactgccgaaggacatttaggtaaattact 45256963  T
Q  109 catgt 113  Q
    |||||    
T  45256962 catgt 45256958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 87
Target Start/End: Original strand, 13921293 - 13921340
Alignment:
Q  40 gcagttaactgccgctgatttactaaaacttcggcagttaactaccga 87  Q
    |||||||||||||||||  || ||||||||||||||||||||| ||||    
T  13921293 gcagttaactgccgctggatttctaaaacttcggcagttaactgccga 13921340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 34738448 - 34738409
Alignment:
Q  1 ttcagatttcatcggcagttaactaccgagattttcctcg 40  Q
    |||||||||| ||||||||||||||||||| |||||||||    
T  34738448 ttcagatttcctcggcagttaactaccgaggttttcctcg 34738409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 47776416 - 47776365
Alignment:
Q  1 ttcagatttcatcggcagttaactaccgagattttcctc-gcagttaactgc 51  Q
    |||||||||| ||||||||||| ||||||| |||||||| ||||||||||||    
T  47776416 ttcagatttcctcggcagttaattaccgaggttttcctcggcagttaactgc 47776365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 109
Target Start/End: Complemental strand, 10517072 - 10516994
Alignment:
Q  32 ttttcctcg-cagttaactgccgctgatttactaaaacttcggcagttaactaccgaaagatattttcgtaaattactc 109  Q
    ||||||||| ||||||||||| || | ||||||||||||||| ||||||||| || ||  | ||||||||||| |||||    
T  10517072 ttttcctcgacagttaactgctgccggtttactaaaacttcgacagttaactgccaaagaacattttcgtaaagtactc 10516994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 30791002 - 30791064
Alignment:
Q  6 atttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttactaaaa 67  Q
    ||||| ||||||||||||||||||| |||||||| | ||||||||||||| | ||| ||||||    
T  30791002 atttcctcggcagttaactaccgaggttttcctcggtagttaactgccgccggtttcctaaaa 30791064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 37345143 - 37345097
Alignment:
Q  15 gcagttaactaccgagattttcctc-gcagttaactgccgctgattt 60  Q
    |||||||||| |||||||||||||| ||||||||||||||| |||||    
T  37345143 gcagttaactcccgagattttcctcggcagttaactgccgccgattt 37345097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 17838723 - 17838646
Alignment:
Q  12 tcggcagttaactaccgagattttcctcgc-agttaactgccgctgatttactaaaacttcggcagttaactaccgaa 88  Q
    |||||||||||||| |||| |||||||||  |||| ||||| || |  || ||||||||||||||||||||| |||||    
T  17838723 tcggcagttaactatcgaggttttcctcggtagtttactgcagccggatttctaaaacttcggcagttaactgccgaa 17838646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 30355239 - 30355288
Alignment:
Q  12 tcggcagttaactaccgagattttcctc-gcagttaactgccgctgattt 60  Q
    ||||||||||||||||||| |||||||| |||||||||||| || |||||    
T  30355239 tcggcagttaactaccgaggttttcctcggcagttaactgcagccgattt 30355288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 43033047 - 43032970
Alignment:
Q  12 tcggcagttaactaccgagattttcctcgc-agttaactgccgctgatttactaaaa-cttcggcagttaactaccga 87  Q
    |||||||||||||||||||   |||||||  ||||||||||||| | ||| |||||| | ||||||||||||||||||    
T  43033047 tcggcagttaactaccgaggaattcctcggtagttaactgccgccggtttcctaaaaacctcggcagttaactaccga 43032970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 51
Target Start/End: Original strand, 9367724 - 9367764
Alignment:
Q  12 tcggcagttaactaccgagattttcctc-gcagttaactgc 51  Q
    ||||||||||||||||||| |||||||| ||||||||||||    
T  9367724 tcggcagttaactaccgaggttttcctcggcagttaactgc 9367764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 42499482 - 42499442
Alignment:
Q  12 tcggcagttaactaccgagattttcctc-gcagttaactgc 51  Q
    ||||||||||||||||||| |||||||| ||||||||||||    
T  42499482 tcggcagttaactaccgaggttttcctcggcagttaactgc 42499442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 54)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 8475896 - 8475801
Alignment:
Q  15 gcagttaactaccgagattttcctcg-cagttaactgccgctgatttactaaaacttcggcagttaactaccgaaagatattttcgtaaattactc 109  Q
    |||||||||||||||| ||||||||| |||||||||||||| | ||||||||||||||||||||||||| ||||| || ||||||||||| |||||    
T  8475896 gcagttaactaccgaggttttcctcggcagttaactgccgccggtttactaaaacttcggcagttaactgccgaaggacattttcgtaaagtactc 8475801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 42165247 - 42165138
Alignment:
Q  1 ttcagatttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttactaaaacttcggcagttaactaccgaaagatattttcg 99  Q
    |||||||||| ||||||||||||||||||| |||||||| ||| ||||||||||| | |||||||||||||| |||| ||||| ||||| |  |||||||    
T  42165247 ttcagatttcctcggcagttaactaccgaggttttcctcggcaattaactgccgccggtttactaaaacttcagcagctaactgccgaagggcattttcg 42165148  T
Q  100 taaattactc 109  Q
    |||| |||||    
T  42165147 taaaatactc 42165138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 6 - 109
Target Start/End: Original strand, 42166404 - 42166508
Alignment:
Q  6 atttcatcggcagttaactaccgagattttcctcg-cagttaactgccgctgatttactaaaacttcggcagttaactaccgaaagatattttcgtaaat 104  Q
    ||||| ||||||||||||||||||  ||||||||| ||||| |||||||| | ||||||||||||||||||||||||| ||||| || ||||| |||||     
T  42166404 atttcctcggcagttaactaccgaagttttcctcggcagtttactgccgccggtttactaaaacttcggcagttaactgccgaatgacatttttgtaaag 42166503  T
Q  105 tactc 109  Q
    |||||    
T  42166504 tactc 42166508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 7 - 109
Target Start/End: Original strand, 4015124 - 4015227
Alignment:
Q  7 tttcatcggcagttaactaccgagattttcctcg-cagttaactgccgctgatttactaaaacttcggcagttaactaccgaaagatattttcgtaaatt 105  Q
    |||| ||||||||||||| ||||| ||||||||| ||||||||| |||| | ||||||||||||||||||||||||| ||||| |  ||||||||||| |    
T  4015124 tttcctcggcagttaacttccgaggttttcctcggcagttaactcccgccggtttactaaaacttcggcagttaactgccgaagggcattttcgtaaagt 4015223  T
Q  106 actc 109  Q
    ||||    
T  4015224 actc 4015227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 32 - 109
Target Start/End: Original strand, 4331840 - 4331918
Alignment:
Q  32 ttttcctc-gcagttaactgccgctgatttactaaaacttcggcagttaactaccgaaagatattttcgtaaattactc 109  Q
    |||||||| ||||||||||||||| | ||||||||||||||||||||||||| ||||| |||||||||||||| |||||    
T  4331840 ttttcctcagcagttaactgccgccggtttactaaaacttcggcagttaactgccgaaggatattttcgtaaagtactc 4331918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 4008312 - 4008421
Alignment:
Q  1 ttcagatttcatcggcagttaactaccgagattttcctcg-cagttaactgccgctgatttactaaaacttcggcagttaactaccgaaagatattttcg 99  Q
    |||||||||| ||||||||||||| ||||| |||| |||| |||||||||||||| | |||||||||| |||||||||| ||| ||||| |  ||||| |    
T  4008312 ttcagatttcctcggcagttaactcccgaggtttttctcgacagttaactgccgccggtttactaaaatttcggcagtttactgccgaagggcatttttg 4008411  T
Q  100 taaattactc 109  Q
    |||| |||||    
T  4008412 taaaatactc 4008421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 7 - 109
Target Start/End: Original strand, 41844359 - 41844463
Alignment:
Q  7 tttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttact-aaaacttcggcagttaactaccgaaagatattttcgtaaat 104  Q
    |||| ||||||||||||||||||| |||||||| ||||||||||||||| | ||| || |||||||||||| || |||||||||||  |||| ||||| |    
T  41844359 tttcctcggcagttaactaccgaggttttcctcggcagttaactgccgccggtttcctaaaaacttcggcaatttactaccgaaaggcatttccgtaact 41844458  T
Q  105 tactc 109  Q
    |||||    
T  41844459 tactc 41844463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 14043898 - 14044001
Alignment:
Q  12 tcggcagttaactaccgagattttcctcg-cagttaactgccgctgatttactaaaacttcggcagttaactaccgaaagatattttcgtaaattactca 110  Q
    ||||||||||||| ||||  ||||||||| ||||||||||| || ||||| ||||||||||| ||||||||| ||||| | |||||  |||||||||||     
T  14043898 tcggcagttaactgccgaagttttcctcggcagttaactgcagccgattttctaaaacttcgacagttaactgccgaagggtatttgggtaaattactcg 14043997  T
Q  111 tgtt 114  Q
    ||||    
T  14043998 tgtt 14044001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 600534 - 600615
Alignment:
Q  2 tcagatttcatcggcagttaactaccgagattttcctcg-cagttaactgccgctgatttactaaaacttcggcagttaact 82  Q
    ||||||||| ||||||||||||||||||| ||||||||| ||||||||||| || |  || | |||||||||||||||||||    
T  600534 tcagatttcctcggcagttaactaccgaggttttcctcgacagttaactgcggccggatttccaaaacttcggcagttaact 600615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 43476265 - 43476188
Alignment:
Q  12 tcggcagttaactaccgagattttcctc-gcagttaactgccg-ctgatttactaaaacttcggcagttaactaccga 87  Q
    ||||||||||||||||||| |||||||| |||||||||||| | | ||||| ||||||||||||||||||||| ||||    
T  43476265 tcggcagttaactaccgaggttttcctcggcagttaactgcagccggattttctaaaacttcggcagttaacttccga 43476188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 35743571 - 35743637
Alignment:
Q  1 ttcagatttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttactaaa 66  Q
    |||| ||||| ||||||||||||||||||| |||||||| ||||||||||||||| ||||| |||||    
T  35743571 ttcatatttcctcggcagttaactaccgaggttttcctcggcagttaactgccgccgatttcctaaa 35743637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 46697795 - 46697741
Alignment:
Q  1 ttcagatttcatcggcagttaactaccgagattttcctc-gcagttaactgccgc 54  Q
    |||||||||| ||||||||||||||||||| |||||||| |||||||||||||||    
T  46697795 ttcagatttcctcggcagttaactaccgaggttttcctcggcagttaactgccgc 46697741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 4004803 - 4004880
Alignment:
Q  12 tcggcagttaactaccgagattttcctcg-cagttaactgccgctgatttactaaaacttcggcagttaactaccgaa 88  Q
    ||||||||||| ||||||| ||||||||| ||||||||||| || |  || |||||||||||||| ||||||||||||    
T  4004803 tcggcagttaagtaccgaggttttcctcggcagttaactgcagccggatttctaaaacttcggcaattaactaccgaa 4004880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 87
Target Start/End: Complemental strand, 48246490 - 48246409
Alignment:
Q  7 tttcatcggcagttaactaccgagattttcctcg-cagttaactgccgctgatttactaaaacttcggcagttaactaccga 87  Q
    |||| ||||||||||||||||||| ||||||||| ||||||||||| || |  || |||||||||| |||||||||| ||||    
T  48246490 tttcctcggcagttaactaccgaggttttcctcgacagttaactgcagccggatttctaaaacttcagcagttaactgccga 48246409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 55385206 - 55385134
Alignment:
Q  16 cagttaactaccgagattttcctcg-cagttaactgccgctgatttactaaaacttcggcagttaactaccga 87  Q
    ||||||||||||||| ||||||||| ||||||||||| || |  || ||||||||||||||||||||| ||||    
T  55385206 cagttaactaccgaggttttcctcggcagttaactgcagccggatttctaaaacttcggcagttaactgccga 55385134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 113
Target Start/End: Complemental strand, 52387826 - 52387755
Alignment:
Q  42 agttaactgccgctgatttactaaaacttcggcagttaactaccgaaagatattttcgtaaattactcatgt 113  Q
    ||||||||||| | | ||||||||||||||| ||||||||| ||||| |  ||||||||||| |||||||||    
T  52387826 agttaactgccaccggtttactaaaacttcgacagttaactgccgaagggcattttcgtaaaatactcatgt 52387755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 2062459 - 2062361
Alignment:
Q  12 tcggcagttaactaccgagattttcctcg-cagttaactgccgctgatttactaaaacttcggcagttaactaccgaaagatattttcgtaaattactc 109  Q
    ||||||||||||| ||||  ||||||||| ||||||||||| ||   ||| ||||||||||||||||||||| ||||| | |||||   ||||||||||    
T  2062459 tcggcagttaactgccgaagttttcctcgacagttaactgcagccagttttctaaaacttcggcagttaactgccgaagggtatttggataaattactc 2062361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 49144445 - 49144499
Alignment:
Q  1 ttcagatttcatcggcagttaactaccgagattttcctc-gcagttaactgccgc 54  Q
    |||||||||| ||||||||||||||||||| ||||| || |||||||||||||||    
T  49144445 ttcagatttcctcggcagttaactaccgaggttttcttcggcagttaactgccgc 49144499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 50477260 - 50477210
Alignment:
Q  5 gatttcatcggcagttaactaccgagattttcctc-gcagttaactgccgc 54  Q
    |||||| ||||||||||||||||||| |||||||| |||||||||||||||    
T  50477260 gatttcctcggcagttaactaccgaggttttcctcggcagttaactgccgc 50477210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 30943268 - 30943219
Alignment:
Q  6 atttcatcggcagttaactaccgagattttcctc-gcagttaactgccgc 54  Q
    ||||| ||||||||||||||||||| |||||||| |||||||||||||||    
T  30943268 atttcctcggcagttaactaccgaggttttcctcggcagttaactgccgc 30943219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 43478825 - 43478906
Alignment:
Q  7 tttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttactaaaacttcggcagttaactaccga 87  Q
    |||| ||||||||||||||||||  |||||||| |||||||||||| || |  || |||||||||| |||||||||| ||||    
T  43478825 tttcctcggcagttaactaccgaagttttcctcggcagttaactgcagccggatttctaaaacttcagcagttaactgccga 43478906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 108
Target Start/End: Original strand, 52391428 - 52391489
Alignment:
Q  47 actgccgctgatttactaaaacttcggcagttaactaccgaaagatattttcgtaaattact 108  Q
    |||||||| | |||||||||||||||||||||||||  |||||| |||||| ||||| ||||    
T  52391428 actgccgccggtttactaaaacttcggcagttaactgtcgaaaggtattttggtaaagtact 52391489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 3501883 - 3501951
Alignment:
Q  1 ttcagatttcatcgg-cagttaactaccgagattttcctc-gcagttaactgccgctgatttactaaaa 67  Q
    |||||||||| |||| ||||||||||||||| |||||||| ||||||||||||||| | ||| ||||||    
T  3501883 ttcagatttcctcgggcagttaactaccgaggttttcctcggcagttaactgccgccggtttcctaaaa 3501951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 19440329 - 19440253
Alignment:
Q  12 tcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttactaaaacttcggcagttaactaccga 87  Q
    ||||||||||||||||||| |||||||| |||||||||||| || | ||||  ||  ||||||||||||||| ||||    
T  19440329 tcggcagttaactaccgaggttttcctcggcagttaactgcagccggtttatgaattcttcggcagttaactgccga 19440253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 109
Target Start/End: Complemental strand, 41612443 - 41612343
Alignment:
Q  10 catcggcagttaactaccgagattttcctcgc-agttaactgccgctgatttactaaaacttcggcagttaactaccgaaagatattttcgtaaattact 108  Q
    ||||||||||||||| |||||    ||||||  ||||||||||||| ||||| ||||||||||| ||||||||| || | ||| ||||  ||||||||||    
T  41612443 catcggcagttaactgccgaggaaatcctcggtagttaactgccgccgattttctaaaacttcgacagttaactgccaatagacatttatgtaaattact 41612344  T
Q  109 c 109  Q
    |    
T  41612343 c 41612343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 46406591 - 46406663
Alignment:
Q  12 tcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttact-aaaacttcggcagttaact 82  Q
    ||||||||||||||||||| |||||||| ||| ||||||||||| | | | || |||||||||||||||||||    
T  46406591 tcggcagttaactaccgaggttttcctcggcacttaactgccgccggtgtcctaaaaacttcggcagttaact 46406663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 49138687 - 49138615
Alignment:
Q  12 tcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttact-aaaacttcggcagttaact 82  Q
    ||||||||||||||||||| |||||||| ||| ||||||||||| | | | || |||||||||||||||||||    
T  49138687 tcggcagttaactaccgaggttttcctcggcacttaactgccgccggtgtcctaaaaacttcggcagttaact 49138615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 7941183 - 7941080
Alignment:
Q  12 tcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttactaaaacttcggcagttaactaccgaaagatattttcgtaaattactca 110  Q
    ||||||||||||| ||||  |||||||| |||||||||||| || | ||   ||||| |||||||||||||| ||||| | |||||  |||||||||||     
T  7941183 tcggcagttaactgccgaagttttcctcagcagttaactgcagccggttctttaaaatttcggcagttaactgccgaagggtatttaggtaaattactcg 7941084  T
Q  111 tgtt 114  Q
    ||||    
T  7941083 tgtt 7941080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 49268834 - 49268885
Alignment:
Q  1 ttcagatttcatcggcagttaactaccgagattttcctc-gcagttaactgc 51  Q
    |||||||||| ||||||||||||||||||  |||||||| ||||||||||||    
T  49268834 ttcagatttcttcggcagttaactaccgatgttttcctcggcagttaactgc 49268885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 87
Target Start/End: Complemental strand, 2645534 - 2645452
Alignment:
Q  7 tttcatcggcagttaactaccgagattttcctcg-cagttaactgccgctgatttactaaaa-cttcggcagttaactaccga 87  Q
    |||| |||| |||||||| ||||| ||||||||| | |||||||||||| | ||| |||||| ||||||||||||||| ||||    
T  2645534 tttcctcggtagttaactgccgaggttttcctcggctgttaactgccgccggtttcctaaaaacttcggcagttaactgccga 2645452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 2647699 - 2647777
Alignment:
Q  12 tcggcagttaactaccgagattttcctc-gcagttaactgccg-ctgatttactaaaacttcggcagttaactaccgaa 88  Q
    ||||||||||||||||||| |||||||| |||||||||||| | | |||||   |||| |||||||||||||| |||||    
T  2647699 tcggcagttaactaccgaggttttcctcggcagttaactgcagccggatttttcaaaatttcggcagttaactgccgaa 2647777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 2967914 - 2967968
Alignment:
Q  1 ttcagatttcatcggcagttaactaccgagattttcctc-gcagttaactgccgc 54  Q
    |||||||||| ||||||||||||||||||| ||||| || |||| ||||||||||    
T  2967914 ttcagatttcctcggcagttaactaccgaggttttcttcggcagctaactgccgc 2967968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 3953209 - 3953271
Alignment:
Q  6 atttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttactaaaa 67  Q
    ||||| ||||||||||||| ||||| |||||||| ||||||||||||||| | ||| ||||||    
T  3953209 atttcctcggcagttaactcccgaggttttcctcggcagttaactgccgccggtttcctaaaa 3953271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 4004929 - 4004891
Alignment:
Q  2 tcagatttcatcggcagttaactaccgagattttcctcg 40  Q
    ||||||||| ||||||||||||||||||| |||||||||    
T  4004929 tcagatttcctcggcagttaactaccgaggttttcctcg 4004891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 6745320 - 6745382
Alignment:
Q  6 atttcatcggcagttaactaccgagattttcc-tcgcagttaactgccgctgatttactaaaa 67  Q
    ||||| ||||||||||||||||||| |||||| | ||||||||||||||| | ||| ||||||    
T  6745320 atttcctcggcagttaactaccgaggttttccttggcagttaactgccgccggtttcctaaaa 6745382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 8156587 - 8156525
Alignment:
Q  6 atttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttactaaaa 67  Q
    ||||| ||||||||||||| ||||| |||||||| ||||||||||||||| | ||| ||||||    
T  8156587 atttcctcggcagttaactgccgaggttttcctcggcagttaactgccgccggtttcctaaaa 8156525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 110
Target Start/End: Complemental strand, 16611144 - 16611074
Alignment:
Q  40 gcagttaactgccgctgatttactaaaacttcggcagttaactaccgaaagatattttcgtaaattactca 110  Q
    ||||||||||||||| | ||| |||||||||||| |||||||| ||||| |  ||||  ||||||||||||    
T  16611144 gcagttaactgccgccggttttctaaaacttcggtagttaactgccgaagggcatttaggtaaattactca 16611074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 110
Target Start/End: Original strand, 22048109 - 22048179
Alignment:
Q  40 gcagttaactgccgctgatttactaaaacttcggcagttaactaccgaaagatattttcgtaaattactca 110  Q
    ||||||||||||||| | ||| |||||||||||| |||||||| ||||| |  ||||  ||||||||||||    
T  22048109 gcagttaactgccgccggttttctaaaacttcggtagttaactgccgaagggcatttaggtaaattactca 22048179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 36134396 - 36134319
Alignment:
Q  12 tcggcagttaactaccgagattttcctc-gcagttaactgccg-ctgatttactaaaacttcggcagttaactaccgaa 88  Q
    ||||||||||||| ||||| |||||||| |||||||||||| | | ||||| |||||||||||| |||||||| |||||    
T  36134396 tcggcagttaactcccgaggttttcctcggcagttaactgcagacggattt-ctaaaacttcggtagttaacttccgaa 36134319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 48888811 - 48888773
Alignment:
Q  14 ggcagttaactaccgagattttcctc-gcagttaactgc 51  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  48888811 ggcagttaactaccgagattttcctcggcagttaactgc 48888773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 54389868 - 54389790
Alignment:
Q  12 tcggcagttaactaccgagattttcctc-gcagttaactgccg-ctgatttactaaaacttcggcagttaactaccgaa 88  Q
    ||||||||||||||||||| |||||||| |||||||||||| | | |||||   |||| |||||||||||||| |||||    
T  54389868 tcggcagttaactaccgaggttttcctcggcagttaactgcagccggatttgagaaaatttcggcagttaactgccgaa 54389790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 103
Target Start/End: Complemental strand, 1293450 - 1293357
Alignment:
Q  12 tcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttact-aaaacttcggcagttaactaccgaaagatattttcgtaaa 103  Q
    ||||||||||||| ||||| |||||||| |||||||||||||||   |||| | ||||||||| ||||| ||| ||||| |  |||||||||||    
T  1293450 tcggcagttaactcccgaggttttcctcggcagttaactgccgccagtttattaaaaacttcgacagtttactgccgaagggcattttcgtaaa 1293357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 3493667 - 3493590
Alignment:
Q  7 tttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttactaaaa-cttcggcagttaact 82  Q
    |||| ||||||||||||| ||||| |||| ||| ||||||||||||||| | |||  ||||| |||||||||||||||    
T  3493667 tttcctcggcagttaactcccgaggtttttctctgcagttaactgccgccggtttcttaaaaacttcggcagttaact 3493590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 3497361 - 3497284
Alignment:
Q  7 tttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttactaaaa-cttcggcagttaact 82  Q
    |||| ||||||||||||| ||||| |||| ||| ||||||||||||||| | |||  ||||| |||||||||||||||    
T  3497361 tttcctcggcagttaactcccgaggtttttctctgcagttaactgccgccggtttcttaaaaacttcggcagttaact 3497284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 11094164 - 11094100
Alignment:
Q  32 ttttcctcg-cagttaactgccgctgatttactaaaacttcggcagttaactaccgaaagatattt 96  Q
    ||||||||| ||||||||||| ||  |||| ||||||||||||||| ||||||||||| |||||||    
T  11094164 ttttcctcggcagttaactgcagcgtattt-ctaaaacttcggcagataactaccgaaggatattt 11094100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 34543125 - 34543238
Alignment:
Q  1 ttcagatttcatcggcagttaactaccgagattttcctcg-cagttaactgccgctgatttactaaaacttcggcagttaactaccgaaagatattttcg 99  Q
    ||||| |||| |||| |||| ||| ||||  ||||||||| ||||||||||| || |  || ||||||||||||||||||||| ||||  || ||||  |    
T  34543125 ttcagttttcctcggtagtttactgccgaagttttcctcggcagttaactgcagccgtatttctaaaacttcggcagttaactgccgagggacatttgag 34543224  T
Q  100 taaattactcatgt 113  Q
    ||| ||||||||||    
T  34543225 taatttactcatgt 34543238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 34691703 - 34691658
Alignment:
Q  7 tttcatcggcagttaactaccgagattttcctcg-cagttaactgc 51  Q
    |||| ||||||||||||||||||| ||||||||| |||||||||||    
T  34691703 tttcctcggcagttaactaccgaggttttcctcgacagttaactgc 34691658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 41844227 - 41844166
Alignment:
Q  7 tttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttactaaaa 67  Q
    |||| |||| |||||||||||||| |||||||| ||||||||||||||| | ||| ||||||    
T  41844227 tttcctcggtagttaactaccgaggttttcctcagcagttaactgccgccggtttcctaaaa 41844166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 2950439 - 2950367
Alignment:
Q  12 tcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttact-aaaacttcggcagttaact 82  Q
    ||||||||||||||||||| |||||||| ||| ||||||||||| | | | || ||||||||||||| |||||    
T  2950439 tcggcagttaactaccgaggttttcctcggcacttaactgccgccggtgtcctaaaaacttcggcaggtaact 2950367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 51
Target Start/End: Original strand, 13896876 - 13896916
Alignment:
Q  12 tcggcagttaactaccgagattttcctcg-cagttaactgc 51  Q
    ||||||||||||||||||| ||||||||| |||||||||||    
T  13896876 tcggcagttaactaccgaggttttcctcgacagttaactgc 13896916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 34049153 - 34049113
Alignment:
Q  12 tcggcagttaactaccgagattttcctc-gcagttaactgc 51  Q
    ||||||||||||||||||| |||||||| ||||||||||||    
T  34049153 tcggcagttaactaccgaggttttcctcggcagttaactgc 34049113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 34051313 - 34051385
Alignment:
Q  12 tcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttact-aaaacttcggcagttaact 82  Q
    |||| |||||||||||||| |||||||| ||| ||||||||||| | | | || |||||||||||||||||||    
T  34051313 tcggtagttaactaccgaggttttcctcggcacttaactgccgccggtgtcctaaaaacttcggcagttaact 34051385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 51
Target Start/End: Original strand, 41579724 - 41579764
Alignment:
Q  12 tcggcagttaactaccgagattttcctc-gcagttaactgc 51  Q
    ||||||||||||||||||| |||||||| ||||||||||||    
T  41579724 tcggcagttaactaccgaggttttcctcggcagttaactgc 41579764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 41803071 - 41803031
Alignment:
Q  12 tcggcagttaactaccgagattttcctc-gcagttaactgc 51  Q
    ||||||||||||||||||| |||||||| ||||||||||||    
T  41803071 tcggcagttaactaccgaggttttcctcggcagttaactgc 41803031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 1e-24; HSPs: 40)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 39947683 - 39947574
Alignment:
Q  1 ttcagatttcatcggcagttaactaccgagattttcctcg-cagttaactgccgctgatttactaaaacttcggcagttaactaccgaaagatattttcg 99  Q
    |||||||||| || |||||||||||||||  ||||||||| |||||||||||||| | ||||||||||||||| ||||| ||||||||| | ||||||||    
T  39947683 ttcagatttcctctgcagttaactaccgaagttttcctcggcagttaactgccgccggtttactaaaacttcgacagtttactaccgaagggtattttcg 39947584  T
Q  100 taaattactc 109  Q
    |||| |||||    
T  39947583 taaagtactc 39947574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 7 - 88
Target Start/End: Original strand, 22003396 - 22003479
Alignment:
Q  7 tttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttact-aaaacttcggcagttaactaccgaa 88  Q
    |||| ||||||||||||||||||| |||||||| ||||||||||||||| | ||| || ||||||||||||||| |||||||||    
T  22003396 tttcctcggcagttaactaccgaggttttcctcggcagttaactgccgccggtttcctaaaaacttcggcagtttactaccgaa 22003479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 7189941 - 7190027
Alignment:
Q  2 tcagatttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttactaaaacttcggcagttaactaccga 87  Q
    ||||||||| ||||||||||||||||||  |||||||| |||||||||||| || |  || ||||||||||||||||||||| ||||    
T  7189941 tcagatttcctcggcagttaactaccgaagttttcctcggcagttaactgcagccggatttctaaaacttcggcagttaactgccga 7190027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 28468725 - 28468623
Alignment:
Q  1 ttcagatttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttacta-aaacttcggcagttaactaccgaaagatattttc 98  Q
    |||||||||| ||||||||||||||||||| |||||||| ||||||||||||||| | ||| | | |||||||||||||| |||| |||| | ||||| |    
T  28468725 ttcagatttcctcggcagttaactaccgaggttttcctcggcagttaactgccgccggtttccaacaaacttcggcagtttactatcgaagggtatttgc 28468626  T
Q  99 gta 101  Q
    |||    
T  28468625 gta 28468623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 32 - 109
Target Start/End: Original strand, 41273268 - 41273346
Alignment:
Q  32 ttttcctcg-cagttaactgccgctgatttactaaaacttcggcagttaactaccgaaagatattttcgtaaattactc 109  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||| |  |||||| |||| |||||    
T  41273268 ttttcctcggcagttaactgccgccgatttactaaaacttcggcagttaactgccgaagggcattttcataaagtactc 41273346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 28419484 - 28419403
Alignment:
Q  8 ttcatcggcagttaactaccgagattttcctcgc-agttaactgccgctgatttactaaaacttcggcagttaactaccgaa 88  Q
    ||||||||||||||||| ||||  |||||||||  |||||||| |||| | ||||||||||||||||||||||||| |||||    
T  28419484 ttcatcggcagttaactgccgaagttttcctcggtagttaactaccgccggtttactaaaacttcggcagttaactgccgaa 28419403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 30493443 - 30493384
Alignment:
Q  1 ttcagatttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatt 59  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||| |||| ||||    
T  30493443 ttcagatttcctcggcagttaactaccgagattttcctcggcagttaactaccgccgatt 30493384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 87
Target Start/End: Original strand, 3943186 - 3943268
Alignment:
Q  6 atttcatcggcagttaactaccgagattttcctcg-cagttaactgccgctgatttactaaaacttcggcagttaactaccga 87  Q
    ||||| ||||||||||||||||||| |||| |||| ||||||||||| || |  || ||||||||||||||||||||| ||||    
T  3943186 atttcctcggcagttaactaccgaggtttttctcggcagttaactgcagccggatttctaaaacttcggcagttaactgccga 3943268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 7267434 - 7267487
Alignment:
Q  2 tcagatttcatcggcagttaactaccgagattttcc-tcgcagttaactgccgc 54  Q
    ||||||||| |||||||||||||||||||||||||| | |||||||||||||||    
T  7267434 tcagatttcctcggcagttaactaccgagattttccttggcagttaactgccgc 7267487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 28477069 - 28477138
Alignment:
Q  14 ggcagttaactaccgagattttcctc-gcagttaactgccgctgatttactaaaacttcggcagttaact 82  Q
    ||||||||||||||||| |||||||| |||||||||||| || |  || |||||||||||||||||||||    
T  28477069 ggcagttaactaccgaggttttcctcggcagttaactgcagccgtatttctaaaacttcggcagttaact 28477138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 88
Target Start/End: Complemental strand, 23346858 - 23346776
Alignment:
Q  7 tttcatcggcagttaactaccgagattttcc-tcgcagttaactgccg-ctgatttactaaaacttcggcagttaactaccgaa 88  Q
    |||| ||||||||||||||||||| |||||| | |||||||||||| | | |||||| |||||||||||||||||||| |||||    
T  23346858 tttcctcggcagttaactaccgaggttttccttggcagttaactgcagccggattta-taaaacttcggcagttaactgccgaa 23346776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 17424205 - 17424127
Alignment:
Q  12 tcggcagttaactaccgagattttcctc-gcagttaactgccg-ctgatttactaaaacttcggcagttaactaccgaa 88  Q
    ||||||||||||||||||| |||||||| |||||||||||| | | ||||| | |||| |||||||||||||| |||||    
T  17424205 tcggcagttaactaccgaggttttcctcggcagttaactgcagccggattttccaaaatttcggcagttaactgccgaa 17424127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 88
Target Start/End: Original strand, 23347323 - 23347405
Alignment:
Q  7 tttcatcggcagttaactaccgagattttcctcgc-agttaactgccgctgatttactaaaacttcggcagttaactaccgaa 88  Q
    |||| |||||||||| |||||||| |||||||||  |||||||||| || |  || ||||||||||||||||||||| |||||    
T  23347323 tttcctcggcagttagctaccgaggttttcctcggtagttaactgcagccggatttctaaaacttcggcagttaactgccgaa 23347405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 43536186 - 43536136
Alignment:
Q  1 ttcagatttcatcggcagttaactaccgagattttcctc-gcagttaactg 50  Q
    |||||||||| ||||||||||||||||||| |||||||| |||||||||||    
T  43536186 ttcagatttcctcggcagttaactaccgaggttttcctcggcagttaactg 43536136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 3935936 - 3935864
Alignment:
Q  12 tcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttact-aaaacttcggcagttaact 82  Q
    ||||||||||||||||||| |||||||| ||| ||||||||||| | | | || |||||||||||||||||||    
T  3935936 tcggcagttaactaccgaggttttcctcggcacttaactgccgcgggtgttctaaaaacttcggcagttaact 3935864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 35493341 - 35493417
Alignment:
Q  12 tcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttactaaaacttcggcagttaactaccga 87  Q
    |||||||||||||||||| ||||||||| |||||||||||| |||| |||   ||  | ||||||||||||||||||    
T  35493341 tcggcagttaactaccgatattttcctcggcagttaactgcagctggtttttgaattcctcggcagttaactaccga 35493417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 42499859 - 42499787
Alignment:
Q  12 tcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttact-aaaacttcggcagttaact 82  Q
    ||||||||||||||||||| |||||||| ||| ||||||||||| | | | || |||||||||||||||||||    
T  42499859 tcggcagttaactaccgaggttttcctcggcacttaactgccgccggtgtcctaaaaacttcggcagttaact 42499787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 103
Target Start/End: Complemental strand, 43312776 - 43312712
Alignment:
Q  40 gcagttaactgccgctgatttact-aaaacttcggcagttaactaccgaaagatattttcgtaaa 103  Q
    ||||||||||||||||| |||||| ||||||||||||||| ||| ||||| |  |||||||||||    
T  43312776 gcagttaactgccgctggtttactaaaaacttcggcagtttactgccgaagggcattttcgtaaa 43312712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 77
Target Start/End: Original strand, 10829060 - 10829095
Alignment:
Q  42 agttaactgccgctgatttactaaaacttcggcagt 77  Q
    ||||||||||||| ||||||||||||||||||||||    
T  10829060 agttaactgccgccgatttactaaaacttcggcagt 10829095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 17420652 - 17420585
Alignment:
Q  1 ttcagatttcatcggcagttaactaccga-gattttcctcgcagttaactgccgctgatttactaaaa 67  Q
    |||||||||| |||||||||||||||||| |||||||   ||||||||||||||| | ||| ||||||    
T  17420652 ttcagatttcctcggcagttaactaccgaggattttctcggcagttaactgccgccggtttcctaaaa 17420585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 87
Target Start/End: Original strand, 29074032 - 29074079
Alignment:
Q  40 gcagttaactgccgctgatttactaaaacttcggcagttaactaccga 87  Q
    |||||||||||||||||  || ||||||||||||||||||||| ||||    
T  29074032 gcagttaactgccgctggatttctaaaacttcggcagttaactgccga 29074079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 32956334 - 32956381
Alignment:
Q  3 cagatttcatcggcagttaactaccgagattttcctc-gcagttaact 49  Q
    |||||||| ||||||||| |||||||||||||||||| ||||||||||    
T  32956334 cagatttcctcggcagttgactaccgagattttcctcggcagttaact 32956381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 44100787 - 44100854
Alignment:
Q  1 ttcagatttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttactaaaa 67  Q
    |||| ||||| |||| |||||||||||||| |||||||| ||||||||||||||| | ||| ||||||    
T  44100787 ttcatatttcctcggtagttaactaccgaggttttcctcggcagttaactgccgccggtttcctaaaa 44100854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 81
Target Start/End: Original strand, 2271737 - 2271807
Alignment:
Q  12 tcggcagttaactaccgagattttcctcg-cagttaactgccgctgatttactaaaacttcggcagttaac 81  Q
    ||||||||||||| ||||  ||||||||| ||||||||||| |||||||   ||||| |||||||||||||    
T  2271737 tcggcagttaactgccgaagttttcctcgacagttaactgcagctgattctttaaaatttcggcagttaac 2271807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 5351726 - 5351788
Alignment:
Q  6 atttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttactaaaa 67  Q
    ||||| ||||||||||||||||||| |||||||| |||||||||| |||| | ||| ||||||    
T  5351726 atttcctcggcagttaactaccgaggttttcctcggcagttaactaccgccggtttcctaaaa 5351788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 10825301 - 10825215
Alignment:
Q  2 tcagatttcatcggcagttaactaccgagattttcctcg-cagttaactgccgctgatttactaaaacttcggcagttaactaccga 87  Q
    ||||||||  ||||||||||||| ||||| ||||||||| ||||||  ||| || |  || |||||||||||| |||||||||||||    
T  10825301 tcagattttctcggcagttaactgccgaggttttcctcgacagttaggtgcagccggatttctaaaacttcggtagttaactaccga 10825215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 18000311 - 18000249
Alignment:
Q  6 atttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttactaaaa 67  Q
    ||||| ||| ||||||||||||||| |||||||| ||||||||||||||| | ||| ||||||    
T  18000311 atttcctcgccagttaactaccgaggttttcctcggcagttaactgccgccggtttcctaaaa 18000249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 108
Target Start/End: Original strand, 43258728 - 43258830
Alignment:
Q  7 tttcatcggcagttaactaccgagattttcctcgc-agttaactgccgctgatttactaaaacttcggcagttaactaccgaaagatattttcgtaaatt 105  Q
    |||| |||||||||||||||| |  ||||| |||  |||||||||| || | |||  | |||||||||||||||||| ||||| || ||||||||||| |    
T  43258728 tttcctcggcagttaactaccaaagttttcttcggtagttaactgcagccggttttttcaaacttcggcagttaactgccgaaggacattttcgtaaagt 43258827  T
Q  106 act 108  Q
    |||    
T  43258828 act 43258830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 2648193 - 2648152
Alignment:
Q  9 tcatcggcagttaactaccgagattttcctc-gcagttaact 49  Q
    ||||||||| ||||||||||||||||||||| ||||||||||    
T  2648193 tcatcggcaattaactaccgagattttcctcggcagttaact 2648152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 25184825 - 25184870
Alignment:
Q  7 tttcatcggcagttaactaccgagattttcctc-gcagttaactgc 51  Q
    |||| ||||||||||||||||||| |||||||| ||||||||||||    
T  25184825 tttcctcggcagttaactaccgaggttttcctcggcagttaactgc 25184870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 114
Target Start/End: Complemental strand, 33416160 - 33416099
Alignment:
Q  53 gctgatttactaaaacttcggcagttaactaccgaaagatattttcgtaaattactcatgtt 114  Q
    |||||||| |||||||||||| |||||||| ||||| | |||||  ||||||||||| ||||    
T  33416160 gctgattttctaaaacttcggtagttaactgccgaagggtatttgagtaaattactcgtgtt 33416099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 43619171 - 43619220
Alignment:
Q  40 gcagttaactgccgctgatttactaaaa-cttcggcagttaactaccgaa 88  Q
    ||||||||||||||| | |||||||||| ||||||||||||||| |||||    
T  43619171 gcagttaactgccgccggtttactaaaaacttcggcagttaactgccgaa 43619220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 43943767 - 43943722
Alignment:
Q  7 tttcatcggcagttaactaccgagattttcctcg-cagttaactgc 51  Q
    |||| ||||||||||||||||||| ||||||||| |||||||||||    
T  43943767 tttcctcggcagttaactaccgagtttttcctcgacagttaactgc 43943722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 108
Target Start/End: Original strand, 213447 - 213551
Alignment:
Q  7 tttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttact-aaaacttcggcagttaactaccga-aagatattttcgtaaa 103  Q
    |||| |||||||||||||||||||   |||||| | ||||||||||||| | ||| || ||||| ||||||||||||| |||| | | ||||| ||||||    
T  213447 tttcctcggcagttaactaccgaggaattcctcggtagttaactgccgccggtttcctaaaaacctcggcagttaactgccgagagggtatttgcgtaaa 213546  T
Q  104 ttact 108  Q
    |||||    
T  213547 ttact 213551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 17426365 - 17426437
Alignment:
Q  12 tcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttact-aaaacttcggcagttaact 82  Q
    ||||||||||||||| ||| |||||||| ||| ||||||||||| | | | || |||||||||||||||||||    
T  17426365 tcggcagttaactactgaggttttcctcggcacttaactgccgccggtgtcctaaaaacttcggcagttaact 17426437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 108
Target Start/End: Original strand, 18003267 - 18003371
Alignment:
Q  7 tttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttact-aaaacttcggcagttaactaccga-aagatattttcgtaaa 103  Q
    |||| |||||||||||||||||||   |||||| | ||||||||||||| | ||| || ||||| ||||||||||||| |||| | | ||||| ||||||    
T  18003267 tttcctcggcagttaactaccgaggaattcctcggtagttaactgccgccggtttcctaaaaacctcggcagttaactgccgagagggtatttgcgtaaa 18003366  T
Q  104 ttact 108  Q
    |||||    
T  18003367 ttact 18003371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 51
Target Start/End: Original strand, 34921759 - 34921799
Alignment:
Q  12 tcggcagttaactaccgagattttcctc-gcagttaactgc 51  Q
    ||||||||||||||||||| |||||||| ||||||||||||    
T  34921759 tcggcagttaactaccgaggttttcctcagcagttaactgc 34921799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 43982272 - 43982232
Alignment:
Q  12 tcggcagttaactaccgagattttcctc-gcagttaactgc 51  Q
    ||||||||||||||||||| |||||||| ||||||||||||    
T  43982272 tcggcagttaactaccgaggttttcctcggcagttaactgc 43982232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 113
Target Start/End: Complemental strand, 44100744 - 44100672
Alignment:
Q  42 agttaactgccgctgatttactaaaa-cttcggcagttaactaccgaaagatattttcgtaaattactcatgt 113  Q
    ||||||||||||| | ||| |||||| ||||||||||| ||||||||| |  |||| ||||| ||||||||||    
T  44100744 agttaactgccgccggtttcctaaaaacttcggcagtttactaccgaagggcatttccgtaacttactcatgt 44100672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 45435201 - 45435233
Alignment:
Q  7 tttcatcggcagttaactaccgagattttcctc 39  Q
    |||||||||||||||||||||||| ||||||||    
T  45435201 tttcatcggcagttaactaccgaggttttcctc 45435233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 12 - 109
Target Start/End: Original strand, 15622 - 15720
Alignment:
Q  12 tcggcagttaactaccgagattttcctcg-cagttaactgccgctgatttactaaaacttcggcagttaactaccgaaagatattttcgtaaattactc 109  Q
    |||||||||||||||| || ||||||||| |||||||||||||| | ||||||||||||||| ||||||||| ||||| || ||||||||||| |||||    
T  15622 tcggcagttaactaccaaggttttcctcggcagttaactgccgccggtttactaaaacttcgacagttaactgccgaaggacattttcgtaaagtactc 15720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 2 - 85
Target Start/End: Original strand, 11840240 - 11840324
Alignment:
Q  2 tcagatttcatcggcagttaactaccgagattttcctcg-cagttaactgccgctgatttactaaaacttcggcagttaactacc 85  Q
    ||||||||| ||||||||||||||||||| ||||||||| ||||||||||| || || || ||||||||||||||||||||||||    
T  11840240 tcagatttcctcggcagttaactaccgaggttttcctcgacagttaactgcagccgaatttctaaaacttcggcagttaactacc 11840324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 7 - 109
Target Start/End: Original strand, 26351091 - 26351194
Alignment:
Q  7 tttcatcggcagttaactaccgagattttcctcg-cagttaactgccgctgatttactaaaacttcggcagttaactaccgaaagatattttcgtaaatt 105  Q
    |||| ||||||||||||| ||||| ||||||||| |||||||||||||| | ||||||||||||||| |||||||||  |||| || ||||||||||| |    
T  26351091 tttcctcggcagttaactcccgaggttttcctcggcagttaactgccgccggtttactaaaacttcgacagttaactgtcgaatgacattttcgtaaagt 26351190  T
Q  106 actc 109  Q
    ||||    
T  26351191 actc 26351194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 7 - 109
Target Start/End: Complemental strand, 26712126 - 26712022
Alignment:
Q  7 tttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttact-aaaacttcggcagttaactaccgaaagatattttcgtaaat 104  Q
    |||| ||||||||||||||||||| |||||||| ||||||||||||||| ||||| || ||||||||||||||| ||||||||| |  |||| ||||| |    
T  26712126 tttcctcggcagttaactaccgaggttttcctcggcagttaactgccgccgatttcctaaaaacttcggcagtttactaccgaagggcatttccgtaact 26712027  T
Q  105 tactc 109  Q
    |||||    
T  26712026 tactc 26712022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 2 - 109
Target Start/End: Complemental strand, 13382712 - 13382603
Alignment:
Q  2 tcagatttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttact-aaaacttcggcagttaactaccgaaagatattttcg 99  Q
    |||| |||| ||||||||||||||||||| |||||||| ||||||||||||||| | ||| || ||||||||| ||||| ||||||||| || ||||  |    
T  13382712 tcagttttcctcggcagttaactaccgaggttttcctcggcagttaactgccgccggtttcctaaaaacttcgtcagtttactaccgaaggacatttgag 13382613  T
Q  100 taaattactc 109  Q
    ||| ||||||    
T  13382612 taatttactc 13382603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 109
Target Start/End: Complemental strand, 3501226 - 3501126
Alignment:
Q  10 catcggcagttaactaccgagattttcctcgc-agttaactgccgctgatttactaaaacttcggcagttaactaccgaaagatattttcgtaaattact 108  Q
    ||||||||||||||| ||||||   ||||||  ||||||||||||||| ||||||||||||||| ||||||||| ||||| |  |||| |||||| ||||    
T  3501226 catcggcagttaactgccgagaaaatcctcggtagttaactgccgctggtttactaaaacttcgacagttaactgccgaagggcatttacgtaaaatact 3501127  T
Q  109 c 109  Q
    |    
T  3501126 c 3501126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 6 - 88
Target Start/End: Original strand, 29076317 - 29076400
Alignment:
Q  6 atttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttactaaaacttcggcagttaactaccgaa 88  Q
    ||||| ||||||||||||||||||| |||||||| |||||||||||| || |  || ||||||||||| ||||||||| |||||    
T  29076317 atttcctcggcagttaactaccgaggttttcctcagcagttaactgcagccggatttctaaaacttcgacagttaactgccgaa 29076400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 6 - 88
Target Start/End: Original strand, 29109850 - 29109933
Alignment:
Q  6 atttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttactaaaacttcggcagttaactaccgaa 88  Q
    ||||| ||||||||||||||||||| |||||||| |||||||||||| || |  || ||||||||||| ||||||||| |||||    
T  29109850 atttcctcggcagttaactaccgaggttttcctcagcagttaactgcagccggatttctaaaacttcgacagttaactgccgaa 29109933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 6 - 88
Target Start/End: Original strand, 29111290 - 29111373
Alignment:
Q  6 atttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttactaaaacttcggcagttaactaccgaa 88  Q
    ||||| ||||||||||||||||||| |||||||| |||||||||||| || |  || ||||||||||| ||||||||| |||||    
T  29111290 atttcctcggcagttaactaccgaggttttcctcagcagttaactgcagccggatttctaaaacttcgacagttaactgccgaa 29111373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 114
Target Start/End: Complemental strand, 9048153 - 9048045
Alignment:
Q  7 tttcatcggcagttaactaccgagattttcctcgc-agttaactgccgctgatttactaaaacttcggcagttaactaccgaaagatattttcgtaaatt 105  Q
    |||| ||||||||||||||||||  |||||||||  |||||||||| || | |||  | |||||||||||||||||| ||||| |  ||||||||||| |    
T  9048153 tttcctcggcagttaactaccgaagttttcctcggtagttaactgcagccggttttttcaaacttcggcagttaactgccgaagggcattttcgtaaagt 9048054  T
Q  106 actcatgtt 114  Q
    ||| |||||    
T  9048053 actaatgtt 9048045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 18351633 - 18351684
Alignment:
Q  2 tcagatttcatcggcagttaactaccgagattttcctc-gcagttaactgcc 52  Q
    ||||||||| ||||||||||||||||||| |||||||| |||||||||||||    
T  18351633 tcagatttcttcggcagttaactaccgaggttttcctcggcagttaactgcc 18351684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 11694027 - 11694097
Alignment:
Q  12 tcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttact-aaaacttcggcagttaa 80  Q
    ||||||||||||||||||| |||||||| ||| ||||||||||| ||| | || |||||||||||||||||    
T  11694027 tcggcagttaactaccgaggttttcctcggcaattaactgccgccgatgtcctaaaaacttcggcagttaa 11694097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 27616799 - 27616745
Alignment:
Q  1 ttcagatttcatcggcagttaactaccgagattttcctc-gcagttaactgccgc 54  Q
    |||||||||| ||||||||||||||||||| ||||| || |||||||||||||||    
T  27616799 ttcagatttcctcggcagttaactaccgaggttttcttcggcagttaactgccgc 27616745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 30258314 - 30258364
Alignment:
Q  11 atcggcagttaactaccgagattttcctcg-cagttaactgccgctgattt 60  Q
    |||||||||||||| ||||||||||||||| ||||||||||| ||||||||    
T  30258314 atcggcagttaactgccgagattttcctcgacagttaactgcagctgattt 30258364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 108
Target Start/End: Original strand, 32223508 - 32223610
Alignment:
Q  7 tttcatcggcagttaactaccgagattttcctcgcag-ttaactgccgctgatttactaaaacttcggcagttaactaccgaaagatattttcgtaaatt 105  Q
    |||| ||||||||||||||||||  |||||||||  | |||||||| || |||||  | |||||||||||||||||| ||||| || |||||| |||| |    
T  32223508 tttcctcggcagttaactaccgaagttttcctcggtggttaactgcagccgattttttcaaacttcggcagttaactgccgaatgacattttcataaagt 32223607  T
Q  106 act 108  Q
    |||    
T  32223608 act 32223610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 28249963 - 28249886
Alignment:
Q  7 tttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttact-aaaacttcggcagttaact 82  Q
    |||| ||||||||||||||||||| |||||||| ||||||||||||||| | ||  || |||||||||||| ||||||    
T  28249963 tttcctcggcagttaactaccgaggttttcctcggcagttaactgccgccggttccctaaaaacttcggcatttaact 28249886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 6207060 - 6207132
Alignment:
Q  12 tcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttact-aaaacttcggcagttaact 82  Q
    ||||||||||||||||||| |||||||| ||| ||||||||||| | | | || |||||||||||||||||||    
T  6207060 tcggcagttaactaccgaggttttcctcggcacttaactgccgccggtgtcctaaaaacttcggcagttaact 6207132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 24085278 - 24085326
Alignment:
Q  5 gatttcatcggcagttaactaccgagattttcctcgcagttaactgccg 53  Q
    |||||| ||| |||||||||||| |||||||||||||||| ||||||||    
T  24085278 gatttcctcgacagttaactacccagattttcctcgcagtaaactgccg 24085326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 26423022 - 26422967
Alignment:
Q  42 agttaactgccgctgatttactaaaacttcggcagttaactaccgaaagatatttt 97  Q
    ||||||||||||| | ||||||||||||||| |||| |||||||||| || |||||    
T  26423022 agttaactgccgccggtttactaaaacttcgacagtaaactaccgaatgacatttt 26422967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 31768837 - 31768798
Alignment:
Q  1 ttcagatttcatcggcagttaactaccgagattttcctcg 40  Q
    |||||||||| ||||||||||||||||||| |||||||||    
T  31768837 ttcagatttcctcggcagttaactaccgaggttttcctcg 31768798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 6204900 - 6204822
Alignment:
Q  12 tcggcagttaactaccgagattttcctc-gcagttaactgccg-ctgatttactaaaacttcggcagttaactaccgaa 88  Q
    ||||||||||||||||||| |||||||| |||||||||||| | | |||||   |||| |||||||||||||| |||||    
T  6204900 tcggcagttaactaccgaggttttcctcggcagttaactgcagccggatttgagaaaatttcggcagttaactgccgaa 6204822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 22305181 - 22305103
Alignment:
Q  12 tcggcagttaactaccgagattttcctc-gcagttaactgccg-ctgatttactaaaacttcggcagttaactaccgaa 88  Q
    ||||||||||||||||||| |||||||| |||||||||||| | | |||||   |||| |||||||||||||| |||||    
T  22305181 tcggcagttaactaccgaggttttcctcggcagttaactgcagccggatttttcaaaatttcggcagttaactgccgaa 22305103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 109
Target Start/End: Complemental strand, 26350027 - 26349950
Alignment:
Q  32 ttttcctcg-cagttaactgccgctgatttactaaaacttcggcagttaactaccgaaagatattttcgtaaattactc 109  Q
    ||||||||| |||||||||||||| | ||||||||| ||||||||||||||| |||||    ||||||||||| |||||    
T  26350027 ttttcctcggcagttaactgccgccggtttactaaa-cttcggcagttaactgccgaagagcattttcgtaaaatactc 26349950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 108
Target Start/End: Original strand, 9049084 - 9049181
Alignment:
Q  12 tcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttactaaaacttcggcagttaactaccgaaagatattttcgtaaattact 108  Q
    ||||||||||||||||||  |||||||| | |||||||||| || | |||  | ||||||||||||||||||  |||| |  ||||||||||| ||||    
T  9049084 tcggcagttaactaccgaagttttcctcggtagttaactgcagccggttttttcaaacttcggcagttaactgtcgaagggcattttcgtaaagtact 9049181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 13388703 - 13388748
Alignment:
Q  7 tttcatcggcagttaactaccgagattttcctcg-cagttaactgc 51  Q
    |||| ||||||||||||||||||| ||||||||| |||||||||||    
T  13388703 tttcctcggcagttaactaccgaggttttcctcgacagttaactgc 13388748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 15888800 - 15888877
Alignment:
Q  12 tcggcagttaactaccgagattttcctcg-cagttaactgccgctgatttactaaaacttcggcagttaactaccgaa 88  Q
    |||||||| ||||||||   ||||||||| ||||||||||| || | ||| |||||||||||| |||||||| |||||    
T  15888800 tcggcagtaaactaccgcagttttcctcggcagttaactgcagccggttttctaaaacttcggtagttaactgccgaa 15888877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 26712218 - 26712279
Alignment:
Q  7 tttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttactaaaa 67  Q
    |||| |||| |||||||||||||| |||||||| ||||||||||||||| | ||| ||||||    
T  26712218 tttcttcggtagttaactaccgaggttttcctcggcagttaactgccgccggtttcctaaaa 26712279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 31771736 - 31771781
Alignment:
Q  7 tttcatcggcagttaactaccgagattttcctc-gcagttaactgc 51  Q
    |||| |||||| ||||||||||||||||||||| ||||||||||||    
T  31771736 tttcctcggcaattaactaccgagattttcctcggcagttaactgc 31771781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 114
Target Start/End: Complemental strand, 32222596 - 32222499
Alignment:
Q  18 gttaactaccgagattttcctc-gcagttaactgccgctgatttactaaaacttcggcagttaactaccgaaagatattttcgtaaattactcatgtt 114  Q
    ||||||||||||  |||||||| | |||||||||| || |||||  | ||||||| |||||||||| ||||| |  ||||||||||| |||| |||||    
T  32222596 gttaactaccgaagttttcctcagtagttaactgcagccgattttttcaaacttcagcagttaactgccgaagggcattttcgtaaagtactaatgtt 32222499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 11691867 - 11691827
Alignment:
Q  12 tcggcagttaactaccgagattttcctc-gcagttaactgc 51  Q
    ||||||||||||||||||| |||||||| ||||||||||||    
T  11691867 tcggcagttaactaccgaggttttcctcggcagttaactgc 11691827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 45)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 39590563 - 39590644
Alignment:
Q  7 tttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttactaaaacttcggcagttaactaccga 87  Q
    |||||||||||||||||||||||| |||||||| |||||||||||| ||||  || ||||||||||||||||||||| ||||    
T  39590563 tttcatcggcagttaactaccgaggttttcctcggcagttaactgcagctgtatttctaaaacttcggcagttaactgccga 39590644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 21022877 - 21022964
Alignment:
Q  1 ttcagatttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttactaaaacttcggcagttaactaccga 87  Q
    |||||||||| ||||||||||||||||||| |||||||| |||||||||||| || |  || ||||||||||||||||||||| ||||    
T  21022877 ttcagatttcctcggcagttaactaccgaggttttcctcggcagttaactgcagccgtatttctaaaacttcggcagttaactgccga 21022964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 26792246 - 26792314
Alignment:
Q  14 ggcagttaactaccgagattttcctc-gcagttaactgccgctgatttact-aaaacttcggcagttaa 80  Q
    |||||||||||||||||||||||||| ||||||||||||||| | |||||| |||||||||||||||||    
T  26792246 ggcagttaactaccgagattttcctcggcagttaactgccgccggtttactaaaaacttcggcagttaa 26792314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 7 - 109
Target Start/End: Complemental strand, 39773482 - 39773378
Alignment:
Q  7 tttcatcggcagttaactaccgagattttcctcg-cagttaactgccgctgatttactaaaa-cttcggcagttaactaccgaaagatattttcgtaaat 104  Q
    |||| ||||||||||||||||||| ||||||||| ||||||||||| || | ||| |||||| ||||||||||| ||||||||| || |||| ||||| |    
T  39773482 tttcctcggcagttaactaccgaggttttcctcggcagttaactgctgccggtttcctaaaaacttcggcagtttactaccgaaggacatttccgtaact 39773383  T
Q  105 tactc 109  Q
    |||||    
T  39773382 tactc 39773378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 7 - 109
Target Start/End: Original strand, 54634010 - 54634114
Alignment:
Q  7 tttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttact-aaaacttcggcagttaactaccgaaagatattttcgtaaat 104  Q
    |||| ||||||||||||||||||| |||||||| ||||||||||||||| | ||| || ||||||||||||||| ||||||||| |  |||| ||||| |    
T  54634010 tttcctcggcagttaactaccgaggttttcctcggcagttaactgccgccggtttcctaaaaacttcggcagtttactaccgaagggcatttccgtaact 54634109  T
Q  105 tactc 109  Q
    |||||    
T  54634110 tactc 54634114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 32 - 109
Target Start/End: Original strand, 28235581 - 28235659
Alignment:
Q  32 ttttcctcg-cagttaactgccgctgatttactaaaacttcggcagttaactaccgaaagatattttcgtaaattactc 109  Q
    ||||||||| |||||||||||||| | ||||||||||||||||||||||||| ||||| |  ||||||||||| |||||    
T  28235581 ttttcctcggcagttaactgccgccggtttactaaaacttcggcagttaactgccgaagggcattttcgtaaaatactc 28235659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 52529281 - 52529187
Alignment:
Q  17 agttaactaccgagattttcctcg-cagttaactgccgctgatttactaaaa-cttcggcagttaactaccgaaagatattttcgtaaattactc 109  Q
    |||||||||||||| ||||||||| |||||||||||||| ||||| |||||| ||||||||||| ||||||||| |  |||| ||||| ||||||    
T  52529281 agttaactaccgaggttttcctcggcagttaactgccgccgatttcctaaaaacttcggcagtttactaccgaagggcatttccgtaacttactc 52529187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 101
Target Start/End: Original strand, 30726732 - 30726832
Alignment:
Q  3 cagatttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttact-aaaacttcggcagttaactaccgaaagatattttcgt 100  Q
    |||||||| ||||||||||||||||||| |||||||| |||||||||||| || | ||| || |||| |||||||||| ||||||||| || |||| |||    
T  30726732 cagatttcctcggcagttaactaccgaggttttcctcggcagttaactgctgccggtttcctaaaaatttcggcagtttactaccgaaggacatttccgt 30726831  T
Q  101 a 101  Q
    |    
T  30726832 a 30726832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 109
Target Start/End: Original strand, 37563275 - 37563379
Alignment:
Q  7 tttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttact-aaaacttcggcagttaactaccgaaagatattttcgtaaat 104  Q
    |||| ||||||||||||||||||| |||||||| ||||||||||||||| | ||| || ||||||||| ||||| ||||||||| |  |||| ||||| |    
T  37563275 tttcctcggcagttaactaccgaggttttcctcggcagttaactgccgccggtttcctaaaaacttcgacagtttactaccgaagggcatttccgtaact 37563374  T
Q  105 tactc 109  Q
    |||||    
T  37563375 tactc 37563379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 56565835 - 56565759
Alignment:
Q  7 tttcatcggcagttaactaccgagattttcctcg-cagttaactgccgctgatttactaaaacttcggcagttaact 82  Q
    |||| |||| |||||||| ||||| ||||||||| |||||||||||||| | ||||||||||||||| |||||||||    
T  56565835 tttcctcggtagttaactcccgaggttttcctcggcagttaactgccgccggtttactaaaacttcgacagttaact 56565759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 16473711 - 16473778
Alignment:
Q  42 agttaactgccgctgatttactaaaacttcggcagttaactaccgaaagatattttcgtaaattactc 109  Q
    ||||||||||||| | ||||||||||||||||||||||||| ||||| |  ||||||||||| |||||    
T  16473711 agttaactgccgccggtttactaaaacttcggcagttaactgccgaagggcattttcgtaaagtactc 16473778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 28234489 - 28234418
Alignment:
Q  12 tcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttactaaaacttcggcagttaact 82  Q
    ||||||||||||||||||| |||||||| ||| ||||||||||| | ||||||||||||||| || ||||||    
T  28234489 tcggcagttaactaccgaggttttcctcggcatttaactgccgccggtttactaaaacttcgacaattaact 28234418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 31425307 - 31425361
Alignment:
Q  1 ttcagatttcatcggcagttaactaccgagattttcctc-gcagttaactgccgc 54  Q
    |||||||||| ||||||||||||||||||| |||||||| |||||||||||||||    
T  31425307 ttcagatttcctcggcagttaactaccgaggttttcctcggcagttaactgccgc 31425361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 40358269 - 40358323
Alignment:
Q  1 ttcagatttcatcggcagttaactaccgagattttcctc-gcagttaactgccgc 54  Q
    |||||||||| ||||||||||||||||||| |||||||| |||||||||||||||    
T  40358269 ttcagatttcctcggcagttaactaccgaggttttcctcggcagttaactgccgc 40358323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 111
Target Start/End: Original strand, 44680072 - 44680174
Alignment:
Q  10 catcggcagttaactaccgagattttcctcgc-agttaactgccgctgatttactaaaacttcggcagttaactaccgaaagatattttcgtaaattact 108  Q
    ||||||||||||||| |||||    ||||||  ||||||||||||| | |||||||||||||||||||||||||  |||| || ||||  ||||||||||    
T  44680072 catcggcagttaactgccgaggaaatcctcggtagttaactgccgccggtttactaaaacttcggcagttaactgtcgaaggacatttaggtaaattact 44680171  T
Q  109 cat 111  Q
    |||    
T  44680172 cat 44680174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 49169086 - 49169188
Alignment:
Q  1 ttcagatttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttact-aaaacttcggcagttaactaccgaaagatattttc 98  Q
    |||||||||| ||||||||||||||||||| | |||||| ||||||||||||||| | ||| || |||||||||| ||  |||| ||||| || ||||||    
T  49169086 ttcagatttcctcggcagttaactaccgaggtattcctcggcagttaactgccgccggtttcctaaaaacttcggtagcaaactgccgaaggacattttc 49169185  T
Q  99 gta 101  Q
    |||    
T  49169186 gta 49169188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 16984156 - 16984237
Alignment:
Q  7 tttcatcggcagttaactaccgagattttcctcg-cagttaactgccgctgatttactaaaacttcggcagttaactaccga 87  Q
    |||| |||||||||||||| |||| ||||||||| ||||||||||| || |  || ||||||||||||||||||||| ||||    
T  16984156 tttcctcggcagttaactatcgaggttttcctcggcagttaactgcagccggatttctaaaacttcggcagttaactgccga 16984237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 109
Target Start/End: Complemental strand, 26932663 - 26932558
Alignment:
Q  6 atttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttact-aaaacttcggcagttaactaccgaaagatattttcgtaaa 103  Q
    ||||| ||||||||||||||||||| |||||||| |||||||||| |||| | ||  || ||||||||||||||| ||||||||| || ||||  ||||     
T  26932663 atttcctcggcagttaactaccgaggttttcctcggcagttaactaccgccggttgtctaaaaacttcggcagtttactaccgaaggacatttgagtaat 26932564  T
Q  104 ttactc 109  Q
    ||||||    
T  26932563 ttactc 26932558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 46254437 - 46254533
Alignment:
Q  1 ttcagatttcatcggcagttaactaccgagattttcctcg-cagttaactgccgctgatttactaaaacttcggcagttaactaccgaaagatattt 96  Q
    ||||| |||| |||| |||| ||| ||||  ||||||||| ||||||||||| || |  || |||||||||||||||||||||||||| ||||||||    
T  46254437 ttcagttttcctcggtagtttactgccgaagttttcctcggcagttaactgcagccgtatttctaaaacttcggcagttaactaccgagagatattt 46254533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 109
Target Start/End: Complemental strand, 34528242 - 34528139
Alignment:
Q  7 tttcatcggcagttaactaccgagattttcctcg-cagttaactgccgctgatttactaaaacttcggcagttaactaccgaaagatattttcgtaaatt 105  Q
    |||| ||||||||||||||||||  ||||| ||  | |||||||||||| | ||||||||||||||| |||||||||  |||| |  ||||||||||| |    
T  34528242 tttcctcggcagttaactaccgatgttttcttcaacggttaactgccgccggtttactaaaacttcgacagttaactgtcgaagggcattttcgtaaagt 34528143  T
Q  106 actc 109  Q
    ||||    
T  34528142 actc 34528139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 80
Target Start/End: Complemental strand, 51492154 - 51492075
Alignment:
Q  2 tcagatttcatcggcagttaactaccgagattttcct-cgcagttaactgccgctgatttactaaaacttcggcagttaa 80  Q
    ||||||||| ||||||||||||||||||| |||||||  |||||||||||| || |  || ||||||||||| |||||||    
T  51492154 tcagatttcctcggcagttaactaccgaggttttcctaggcagttaactgcagccggatttctaaaacttcgacagttaa 51492075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 82
Target Start/End: Complemental strand, 3184025 - 3183983
Alignment:
Q  40 gcagttaactgccgctgatttactaaaacttcggcagttaact 82  Q
    ||||||||||||||| | |||||||||||||||||||||||||    
T  3184025 gcagttaactgccgccggtttactaaaacttcggcagttaact 3183983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 1089575 - 1089640
Alignment:
Q  3 cagatttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttactaaaa 67  Q
    |||||||| ||||||||||||||||||| |||||||| ||| ||||||||||| | ||| ||||||    
T  1089575 cagatttcctcggcagttaactaccgaggttttcctcggcatttaactgccgccggtttcctaaaa 1089640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 87
Target Start/End: Complemental strand, 16983600 - 16983519
Alignment:
Q  7 tttcatcggcagttaactaccgagattttcctcg-cagttaactgccgctgatttactaaaacttcggcagttaactaccga 87  Q
    |||| ||||||||||||||||||| |||| |||| ||||||||||  || |  || ||||||||||||||||||||| ||||    
T  16983600 tttcttcggcagttaactaccgaggtttttctcggcagttaactgtagccggatttctaaaacttcggcagttaactgccga 16983519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 109
Target Start/End: Complemental strand, 44795103 - 44795034
Alignment:
Q  40 gcagttaactgccgctgatttactaaaacttcggcagttaactaccgaaagatattttcgtaaattactc 109  Q
    |||||| ||||||||   ||||||||||||||||||||||||| ||||| |  ||||||||||| |||||    
T  44795103 gcagtttactgccgccagtttactaaaacttcggcagttaactgccgaatggcattttcgtaaagtactc 44795034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 50905154 - 50905210
Alignment:
Q  32 ttttcctcg-cagttaactgccgctgatttactaaaacttcggcagttaactaccga 87  Q
    ||||||||| |||||||||||||| |||||  ||||||||||||| |||||||||||    
T  50905154 ttttcctcggcagttaactgccgccgattttttaaaacttcggcaattaactaccga 50905210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 51
Target Start/End: Original strand, 55407793 - 55407833
Alignment:
Q  12 tcggcagttaactaccgagattttcctc-gcagttaactgc 51  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  55407793 tcggcagttaactaccgagattttcctcggcagttaactgc 55407833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 28081524 - 28081454
Alignment:
Q  19 ttaactaccgagattttcctcg-cagttaactgccg-ctgatttactaaaacttcggcagttaactaccgaa 88  Q
    ||||||| |||||||||||||| ||||||||||| | | ||||| ||||||||||||||||||||| |||||    
T  28081524 ttaactaacgagattttcctcggcagttaactgcagtcggattt-ctaaaacttcggcagttaactgccgaa 28081454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 3186093 - 3186135
Alignment:
Q  40 gcagttaactgccgctgatttactaaaacttcggcagttaact 82  Q
    ||||||||||||||| | |||||||||||||| ||||||||||    
T  3186093 gcagttaactgccgccggtttactaaaacttctgcagttaact 3186135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 6178110 - 6178188
Alignment:
Q  12 tcggcagttaactaccgagattttcctc-gcagttaactgccg-ctgatttactaaaacttcggcagttaactaccgaa 88  Q
    ||||||||||||||||||| |||||||| |||||||||||| | | |||||   |||| |||||||||||||| |||||    
T  6178110 tcggcagttaactaccgaggttttcctcggcagttaactgcagccggatttgagaaaatttcggcagttaactgccgaa 6178188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 15995805 - 15995755
Alignment:
Q  2 tcagatttcatcggcagttaactaccgagattttcctc-gcagttaactgc 51  Q
    |||| |||| ||||||||||||||||||| |||||||| ||||||||||||    
T  15995805 tcagttttcctcggcagttaactaccgaggttttcctcggcagttaactgc 15995755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 19069270 - 19069220
Alignment:
Q  2 tcagatttcatcggcagttaactaccgagattttcctc-gcagttaactgc 51  Q
    |||| |||| ||||||||||||||||||| |||||||| ||||||||||||    
T  19069270 tcagttttcctcggcagttaactaccgaggttttcctcggcagttaactgc 19069220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 41793437 - 41793367
Alignment:
Q  12 tcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttact-aaaacttcggcagttaa 80  Q
    ||||||||||||||||||| |||||||| ||| ||||||||||| | | | || |||||||||||||||||    
T  41793437 tcggcagttaactaccgaggttttcctcggcacttaactgccgccggtgtcctaaaaacttcggcagttaa 41793367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 41800926 - 41800980
Alignment:
Q  1 ttcagatttcatcggcagttaactaccgagattttcctc-gcagttaactgccgc 54  Q
    |||||||||| ||||||||||||||||||| ||||| || |||| ||||||||||    
T  41800926 ttcagatttcctcggcagttaactaccgaggttttcttcggcagctaactgccgc 41800980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 49094157 - 49094079
Alignment:
Q  12 tcggcagttaactaccgagattttcctc-gcagttaactgccg-ctgatttactaaaacttcggcagttaactaccgaa 88  Q
    ||||||||||||||||||| |||||||| |||||||||||| | | |||||   |||| |||||||||||||| |||||    
T  49094157 tcggcagttaactaccgaggttttcctcggcagttaactgcagccggatttgagaaaatttcggcagttaactgccgaa 49094079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 20208587 - 20208507
Alignment:
Q  8 ttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatt-tactaaaacttcggcagttaactaccga 87  Q
    |||||| |||||||||||||||| |||||||| |||||||||||| || | || || | |||||||||||||||||| ||||    
T  20208587 ttcatctgcagttaactaccgaggttttcctcggcagttaactgcagccggttctagt-aaacttcggcagttaactgccga 20208507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 87
Target Start/End: Complemental strand, 21015817 - 21015736
Alignment:
Q  7 tttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttactaaaacttcggcagttaactaccga 87  Q
    |||| ||||||||||||||||||| ||| |||| ||||||||||||  | |  || ||||||||||| ||||||||| ||||    
T  21015817 tttcctcggcagttaactaccgaggtttccctcagcagttaactgcacccgtatttctaaaacttcgacagttaactgccga 21015736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 31242260 - 31242211
Alignment:
Q  40 gcagttaactgccgctgatttactaaaa-cttcggcagttaactaccgaa 88  Q
    ||||||||||||||| | |||||||||| ||||||||||||||| |||||    
T  31242260 gcagttaactgccgccggtttactaaaaacttcggcagttaactgccgaa 31242211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 51
Target Start/End: Original strand, 958594 - 958634
Alignment:
Q  12 tcggcagttaactaccgagattttcctc-gcagttaactgc 51  Q
    ||||||||||||||||||| |||||||| ||||||||||||    
T  958594 tcggcagttaactaccgaggttttcctcggcagttaactgc 958634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 1042008 - 1041968
Alignment:
Q  12 tcggcagttaactaccgagattttcctc-gcagttaactgc 51  Q
    |||||||||||||||||||||||| ||| ||||||||||||    
T  1042008 tcggcagttaactaccgagatttttctcggcagttaactgc 1041968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 6175950 - 6175878
Alignment:
Q  12 tcggcagttaactaccgagattttcc-tcgcagttaactgccgctgatttact-aaaacttcggcagttaact 82  Q
    ||||||||||||||||||| |||||| | ||| ||||||||||| | | | || |||||||||||||||||||    
T  6175950 tcggcagttaactaccgaggttttccttggcacttaactgccgccggtgtcctaaaaacttcggcagttaact 6175878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 9890067 - 9890027
Alignment:
Q  12 tcggcagttaactaccgagattttcctc-gcagttaactgc 51  Q
    ||||||||||||||||||| |||||||| ||||||||||||    
T  9890067 tcggcagttaactaccgaggttttcctcggcagttaactgc 9890027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 11494616 - 11494576
Alignment:
Q  12 tcggcagttaactaccgagattttcctc-gcagttaactgc 51  Q
    ||||||||||||||||||| |||||||| ||||||||||||    
T  11494616 tcggcagttaactaccgaggttttcctcggcagttaactgc 11494576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 40
Target Start/End: Original strand, 44561330 - 44561358
Alignment:
Q  12 tcggcagttaactaccgagattttcctcg 40  Q
    |||||||||||||||||||||||||||||    
T  44561330 tcggcagttaactaccgagattttcctcg 44561358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 49563913 - 49563857
Alignment:
Q  12 tcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttactaaaa 67  Q
    ||||| ||||||||||||| |||||||| ||||||||||||||| | ||| ||||||    
T  49563913 tcggccgttaactaccgaggttttcctcggcagttaactgccgccggtttcctaaaa 49563857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 5e-18; HSPs: 40)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 22524210 - 22524128
Alignment:
Q  1 ttcagatttcatcggcagttaactaccgagattttcctcgc-agttaactgccgctgatttactaaaacttcggcagttaact 82  Q
    |||||||||  ||||||||||||||||||| |||||||||  ||||||||||||| | |||||||||||||||||| ||||||    
T  22524210 ttcagattttctcggcagttaactaccgaggttttcctcgggagttaactgccgccggtttactaaaacttcggcacttaact 22524128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 4 - 109
Target Start/End: Original strand, 31783707 - 31783813
Alignment:
Q  4 agatttcatcggcagttaactaccgagattttcctcg-cagttaactgccgctgatttactaaaacttcggcagttaactaccgaaagatattttcgtaa 102  Q
    ||||||| ||||||||||||| ||||| ||||||||| ||||||||| ||||  |||||||||||||||| |||||||||  |||| || |||||||| |    
T  31783707 agatttcctcggcagttaactcccgaggttttcctcggcagttaactaccgccaatttactaaaacttcgacagttaactgtcgaaggacattttcgtta 31783806  T
Q  103 attactc 109  Q
    | |||||    
T  31783807 aatactc 31783813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 2425676 - 2425761
Alignment:
Q  3 cagatttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttactaaaacttcggcagttaactaccga 87  Q
    |||||||| |||||||||||||||||||||| ||||| |||||||||||| || |  || | ||||||||||||||||||| ||||    
T  2425676 cagatttcctcggcagttaactaccgagattctcctcagcagttaactgcagccggatttccaaaacttcggcagttaactgccga 2425761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 90
Target Start/End: Complemental strand, 19161970 - 19161886
Alignment:
Q  7 tttcatcggcagttaactaccgagattttcctcg-cagttaactgccgctgatttactaaaacttcggcagttaactaccgaaag 90  Q
    |||| ||||||||||||| ||||| ||||||||| ||||||||||| || |  || ||||||||||||||||||||| |||||||    
T  19161970 tttcctcggcagttaactcccgaggttttcctcggcagttaactgcagccggatttctaaaacttcggcagttaactgccgaaag 19161886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 8548658 - 8548725
Alignment:
Q  1 ttcagatttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttactaaaa 67  Q
    |||||||||| ||||||||||||||||||| |||||||| ||||||||||||||| | ||| ||||||    
T  8548658 ttcagatttcctcggcagttaactaccgaggttttcctcggcagttaactgccgccggtttcctaaaa 8548725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 18609895 - 18609966
Alignment:
Q  12 tcggcagttaactaccgagattttcctcgc-agttaactgccgctgatttactaaaacttcggcagttaact 82  Q
    ||||||||||||| ||||  |||||||||  ||||||||||||| | |||||||||||||||||||||||||    
T  18609895 tcggcagttaactgccgaagttttcctcggtagttaactgccgccggtttactaaaacttcggcagttaact 18609966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 45977701 - 45977796
Alignment:
Q  15 gcagttaactaccgagattttcctcg-cagttaactgccgctgatttactaaaacttcggcagttaactaccgaaagatattttcgtaaattactc 109  Q
    ||||||||||| |||  ||||||||| ||||| |||  ||| | ||||||||||||||||||||||||| ||||| || ||||||||||| |||||    
T  45977701 gcagttaactatcgaagttttcctcggcagtttactttcgccggtttactaaaacttcggcagttaactgccgaatgacattttcgtaaagtactc 45977796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 97952 - 97994
Alignment:
Q  40 gcagttaactgccgctgatttactaaaacttcggcagttaact 82  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  97952 gcagttaactgccgccgatttactaaaacttcggcagttaact 97994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 3728819 - 3728765
Alignment:
Q  1 ttcagatttcatcggcagttaactaccgagattttcctc-gcagttaactgccgc 54  Q
    |||||||||| ||||||||||||||||||| |||||||| |||||||||||||||    
T  3728819 ttcagatttcctcggcagttaactaccgaggttttcctcggcagttaactgccgc 3728765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 108
Target Start/End: Complemental strand, 14985380 - 14985314
Alignment:
Q  42 agttaactgccgctgatttactaaaacttcggcagttaactaccgaaagatattttcgtaaattact 108  Q
    ||||||||||||| |||||||||||||||||||||||||||  |||| |  ||||||||||| ||||    
T  14985380 agttaactgccgccgatttactaaaacttcggcagttaactgtcgaagggcattttcgtaaagtact 14985314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 108
Target Start/End: Original strand, 46217313 - 46217415
Alignment:
Q  7 tttcatcggcagttaactaccgagattttcctcgc-agttaactgccgctgatttactaaaacttcggcagttaactaccgaaagatattttcgtaaatt 105  Q
    |||| ||||||||||||||||||  |||||||||  |||||||||| || |||||  | ||||||||||| |||||| ||||| || ||||||||||| |    
T  46217313 tttcctcggcagttaactaccgaagttttcctcggtagttaactgcagccgattttttcaaacttcggcaattaactgccgaatgacattttcgtaaagt 46217412  T
Q  106 act 108  Q
    |||    
T  46217413 act 46217415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 15051338 - 15051403
Alignment:
Q  2 tcagatttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttactaaa 66  Q
    |||||||||  |||||||||||||||||| |||||||| ||||||||||||||| | |||||||||    
T  15051338 tcagatttcgccggcagttaactaccgaggttttcctcggcagttaactgccgccggtttactaaa 15051403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 3944053 - 3943991
Alignment:
Q  6 atttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttactaaaa 67  Q
    ||||| ||||||||||||||||||| |||||||| ||||||||||||||| | ||| ||||||    
T  3944053 atttcctcggcagttaactaccgaggttttcctcggcagttaactgccgccggtttcctaaaa 3943991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 3993837 - 3993899
Alignment:
Q  6 atttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttactaaaa 67  Q
    ||||| ||||||||||||||||||| |||||||| ||||||||||||||| | ||| ||||||    
T  3993837 atttcctcggcagttaactaccgaggttttcctcggcagttaactgccgccggtttcctaaaa 3993899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 26879284 - 26879338
Alignment:
Q  1 ttcagatttcatcggcagttaactaccgagattttcctc-gcagttaactgccgc 54  Q
    |||||||||| | ||||||||||||||||| |||||||| |||||||||||||||    
T  26879284 ttcagatttccttggcagttaactaccgaggttttcctcggcagttaactgccgc 26879338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 29622413 - 29622467
Alignment:
Q  1 ttcagatttcatcggcagttaactaccgagattttcctc-gcagttaactgccgc 54  Q
    |||||||||| ||||||||||||||||||| |||||||| ||| |||||||||||    
T  29622413 ttcagatttcctcggcagttaactaccgaggttttcctcggcaattaactgccgc 29622467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 21699926 - 21699885
Alignment:
Q  42 agttaactgccgctgatttactaaaacttcggcagttaacta 83  Q
    ||||||||||||| | ||||||||||||||||||||||||||    
T  21699926 agttaactgccgccggtttactaaaacttcggcagttaacta 21699885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 6557988 - 6557948
Alignment:
Q  12 tcggcagttaactaccgagattttcctc-gcagttaactgc 51  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  6557988 tcggcagttaactaccgagattttcctcggcagttaactgc 6557948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 53
Target Start/End: Original strand, 50117840 - 50117888
Alignment:
Q  6 atttcatcggcagttaactaccgagattttcctc-gcagttaactgccg 53  Q
    ||||| |||||| ||||||||||||||||||||| ||||||||||||||    
T  50117840 atttcctcggcatttaactaccgagattttcctcggcagttaactgccg 50117888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 19928800 - 19928883
Alignment:
Q  1 ttcagatttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttact-aaaacttcggcagttaact 82  Q
    ||||| |||| ||||||||||||||||||| |||| ||| ||| ||||||||||| |  || || |||||||||||||||||||    
T  19928800 ttcagttttcctcggcagttaactaccgaggttttactcggcacttaactgccgccggcttcctaaaaacttcggcagttaact 19928883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 51271592 - 51271667
Alignment:
Q  13 cggcagttaactaccgagattttcctcg-cagttaactgccgctgatttactaaaacttcggcagttaactaccga 87  Q
    ||||||||||| |||||| ||||||||| || |||||||| || |  || ||||||||||||||||||||| ||||    
T  51271592 cggcagttaaccaccgaggttttcctcggcaattaactgcagccggatttctaaaacttcggcagttaactgccga 51271667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 13633947 - 13633873
Alignment:
Q  7 tttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttac-taaaacttcggcagtta 79  Q
    |||| ||||||||||||||||||| |||||||| |||||||||| |||| | ||| | | |||||||||||||||    
T  13633947 tttcttcggcagttaactaccgaggttttcctcggcagttaactaccgccggtttccttcaaacttcggcagtta 13633873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 13636122 - 13636200
Alignment:
Q  12 tcggcagttaactaccgagattttcctc-gcagttaactgccg-ctgatttactaaaacttcggcagttaactaccgaa 88  Q
    ||||||||||||||||||| |||||||| |||||||||||| | | |||||   |||| |||||||||||||| |||||    
T  13636122 tcggcagttaactaccgaggttttcctcggcagttaactgcagccggatttttcaaaatttcggcagttaactgccgaa 13636200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 20353929 - 20353991
Alignment:
Q  6 atttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttactaaaa 67  Q
    ||||| ||||||||||||||||||  |||||||| ||||||||||||||| | ||| ||||||    
T  20353929 atttcctcggcagttaactaccgaagttttcctcggcagttaactgccgccggtttcctaaaa 20353991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 22397864 - 22397806
Alignment:
Q  40 gcagttaactgccgctgatttact-aaaacttcggcagttaactaccgaaagatatttt 97  Q
    ||||||||||||||| | |||||| ||||||||||||||||||| ||||| | ||||||    
T  22397864 gcagttaactgccgccggtttactcaaaacttcggcagttaactgccgaagggtatttt 22397806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 108
Target Start/End: Complemental strand, 29424458 - 29424356
Alignment:
Q  7 tttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttactaaaacttcggcagttaactaccgaaagatattttcgtaaatt 105  Q
    |||| ||||||||||||||||||  |||||||| | |||||||||| || | |||  | ||||||||||| |||||| ||||| |  ||||||||||| |    
T  29424458 tttcctcggcagttaactaccgaagttttcctcggtagttaactgcagccggtttttttaaacttcggcaattaactgccgaagggcattttcgtaaagt 29424359  T
Q  106 act 108  Q
    |||    
T  29424358 act 29424356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 108
Target Start/End: Original strand, 29425331 - 29425433
Alignment:
Q  7 tttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttactaaaacttcggcagttaactaccgaaagatattttcgtaaatt 105  Q
    |||| ||||||||||||||||||  |||||||| | ||||||||||  | |||||  | |||||||| ||||||||| ||||| |  ||||||||||| |    
T  29425331 tttcctcggcagttaactaccgaagttttcctcggtagttaactgcaaccgattttttcaaacttcgacagttaactgccgaagggcattttcgtaaagt 29425430  T
Q  106 act 108  Q
    |||    
T  29425431 act 29425433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 38771708 - 38771646
Alignment:
Q  6 atttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttactaaaa 67  Q
    ||||| ||||||||||||| ||||| |||||||| ||||||||||||||| | ||| ||||||    
T  38771708 atttcctcggcagttaactcccgaggttttcctcggcagttaactgccgccggtttcctaaaa 38771646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 46886378 - 46886463
Alignment:
Q  2 tcagatttcatcggcagttaactaccgagattttcctcg-cagttaactgccgctgatttactaaaacttcggcagttaactaccga 87  Q
    |||| |||| ||||||||||||||||||| ||||||||| || |||||| | || |  || ||||||||||||||||||||| ||||    
T  46886378 tcagttttcctcggcagttaactaccgag-ttttcctcggcacttaactacagccggatttctaaaacttcggcagttaactgccga 46886463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 8460097 - 8460146
Alignment:
Q  12 tcggcagttaactaccgagattttcc-tcgcagttaactgccgctgattt 60  Q
    |||||||||||||||||||||||||| | |||||||||||| || |||||    
T  8460097 tcggcagttaactaccgagattttccttggcagttaactgcagccgattt 8460146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 36072442 - 36072393
Alignment:
Q  12 tcggcagttaactaccgagattttcctc-gcagttaactgccgctgattt 60  Q
    ||||||||||||||||||| |||||||| |||||||||||| || |||||    
T  36072442 tcggcagttaactaccgaggttttcctcggcagttaactgcagccgattt 36072393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 38119614 - 38119655
Alignment:
Q  15 gcagttaactaccgagattttcctc-gcagttaactgccgct 55  Q
    |||||||||||||||| |||||||| ||||||||||||||||    
T  38119614 gcagttaactaccgaggttttcctcggcagttaactgccgct 38119655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 50343999 - 50344044
Alignment:
Q  42 agttaactgccgctgatttactaaaacttcggcagttaactaccga 87  Q
    ||||||||||||| | ||| ||||||||||||||||||||| ||||    
T  50343999 agttaactgccgccggttttctaaaacttcggcagttaactgccga 50344044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 51289955 - 51290000
Alignment:
Q  7 tttcatcggcagttaactaccgagattttcctc-gcagttaactgc 51  Q
    |||||||||||| ||||||||||| |||||||| ||||||||||||    
T  51289955 tttcatcggcagctaactaccgaggttttcctcggcagttaactgc 51290000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 11197466 - 11197426
Alignment:
Q  15 gcagttaactaccgagattttcctc-gcagttaactgccgc 54  Q
    |||||||||| |||||||||||||| |||||||||||||||    
T  11197466 gcagttaactcccgagattttcctcggcagttaactgccgc 11197426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 26633600 - 26633560
Alignment:
Q  12 tcggcagttaactaccgagattttcctc-gcagttaactgc 51  Q
    ||||||||||||||||||| |||||||| ||||||||||||    
T  26633600 tcggcagttaactaccgaggttttcctcggcagttaactgc 26633560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 108
Target Start/End: Original strand, 31945856 - 31945960
Alignment:
Q  7 tttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttact-aaaacttcggcagttaactaccga-aagatattttcgtaaa 103  Q
    |||| |||||||||||||||||||   |||||| | ||||||||||||| | ||| || ||||| ||||||||||||| |||| | | ||||| ||||||    
T  31945856 tttcctcggcagttaactaccgaggaattcctcggtagttaactgccgccggtttcctaaaaacctcggcagttaactgccgagagggtatttgcgtaaa 31945955  T
Q  104 ttact 108  Q
    |||||    
T  31945956 ttact 31945960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 44336322 - 44336282
Alignment:
Q  12 tcggcagttaactaccgagattttcctc-gcagttaactgc 51  Q
    ||||||||||||||||||| |||||||| ||||||||||||    
T  44336322 tcggcagttaactaccgaggttttcctcggcagttaactgc 44336282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 40
Target Start/End: Complemental strand, 50113380 - 50113352
Alignment:
Q  12 tcggcagttaactaccgagattttcctcg 40  Q
    |||||||||||||||||||||||||||||    
T  50113380 tcggcagttaactaccgagattttcctcg 50113352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 52802203 - 52802163
Alignment:
Q  12 tcggcagttaactaccgagattttcctc-gcagttaactgc 51  Q
    ||||||||||||||||||| |||||||| ||||||||||||    
T  52802203 tcggcagttaactaccgaggttttcctcggcagttaactgc 52802163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 10725 - 10656
Alignment:
Q  12 tcggcagttaactaccgagattttcctcg-cagttaactgccgctgatttactaaaacttcggcagttaa 80  Q
    ||||||||||||||||||| ||| ||||| |||||||||||||| | |||||||||||||||||||||||    
T  10725 tcggcagttaactaccgaggtttccctcggcagttaactgccgccggtttactaaaacttcggcagttaa 10656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 12388 - 12465
Alignment:
Q  12 tcggcagttaactaccgagattttcctcg-cagttaactgccgctgatttactaaaacttcggcagttaactaccgaa 88  Q
    ||||||||||||||||||| ||||| ||| ||||||||||| || |  || ||||||||||||||||||||| |||||    
T  12388 tcggcagttaactaccgaggttttcatcggcagttaactgcagccggatttctaaaacttcggcagttaactgccgaa 12465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 13837797 - 13837698
Alignment:
Q  12 tcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttact-aaaacttcggcagttaactaccgaaagatattttcgtaaattactc 109  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| | |||||| ||||||||||||||| ||| ||||| |  ||||| ||||| |||||    
T  13837797 tcggcagttaactaccgaggttttcctcggcagttaactgccgccggtttactaaaaacttcggcagtttactgccgaagggcatttttgtaaagtactc 13837698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 7757407 - 7757327
Alignment:
Q  3 cagatttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttactaaaacttcggcagttaact 82  Q
    |||||||| |||||||||||||| |||| |||||||| |||||||||||| || |  || |||||||||||||||||||||    
T  7757407 cagatttcctcggcagttaactagcgaggttttcctcggcagttaactgcagccggatttctaaaacttcggcagttaact 7757327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 11346076 - 11346009
Alignment:
Q  16 cagttaactaccgagattttcctcg-cagttaactgccgctgatttactaaaacttcggcagttaact 82  Q
    ||||||||||||||| ||||||||| ||||||||||| ||||  || |||||||||||||||||||||    
T  11346076 cagttaactaccgaggttttcctcggcagttaactgcagctggatttctaaaacttcggcagttaact 11346009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 28238223 - 28238156
Alignment:
Q  1 ttcagatttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttactaaaa 67  Q
    |||||||||| ||||||||||||||||||| |||||||| ||||||||||||||| | ||| ||||||    
T  28238223 ttcagatttcctcggcagttaactaccgaggttttcctcggcagttaactgccgccggtttcctaaaa 28238156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 37814665 - 37814600
Alignment:
Q  2 tcagatttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttactaaa 66  Q
    ||||||||| |||||||||||||||| || |||||||| ||||||||||||||| | |||||||||    
T  37814665 tcagatttcttcggcagttaactaccaaggttttcctcggcagttaactgccgccggtttactaaa 37814600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 42912878 - 42912955
Alignment:
Q  12 tcggcagttaactaccgagattttcctcgc-agttaactgccgctgatttactaaaacttcggcagttaactaccgaa 88  Q
    ||||||||||||| ||||  |||||||||  ||||||||||||| | ||||||||||||||| || ||||||||||||    
T  42912878 tcggcagttaactgccgaagttttcctcggtagttaactgccgccggtttactaaaacttcgacaattaactaccgaa 42912955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 88
Target Start/End: Complemental strand, 27660018 - 27659935
Alignment:
Q  7 tttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttact-aaaacttcggcagttaactaccgaa 88  Q
    |||| ||||||||||||||||||| |||||||| ||||||||| ||||  | ||| || ||||||||||||||| |||||||||    
T  27660018 tttcctcggcagttaactaccgaggttttcctcggcagttaaccgccgtcggtttcctaaaaacttcggcagtttactaccgaa 27659935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 38855713 - 38855788
Alignment:
Q  14 ggcagttaactaccgagattttcctc-gcagttaactgccgctgatttac-taaaacttcggcagttaactaccga 87  Q
    ||||||||||||||||| |||||||| ||||||||||||||| | ||| | | |||||||||||||||||| ||||    
T  38855713 ggcagttaactaccgaggttttcctcggcagttaactgccgccggtttccttcaaacttcggcagttaactgccga 38855788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 7762239 - 7762320
Alignment:
Q  7 tttcatcggcagttaactaccgagattttcctcg-cagttaactgccgctgatttactaaaacttcggcagttaactaccga 87  Q
    |||| ||||||||||||| | ||| ||||||||| |||||||||||  | || || ||||||||||||||||||||| ||||    
T  7762239 tttcctcggcagttaactcctgaggttttcctcgacagttaactgcaaccgaatttctaaaacttcggcagttaactgccga 7762320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 19035311 - 19035239
Alignment:
Q  12 tcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttactaa-aacttcggcagttaact 82  Q
    ||||||||||||||||||| |||||||| ||| ||||||||||| | | | |||| |||||||||||||||||    
T  19035311 tcggcagttaactaccgaggttttcctcggcacttaactgccgccggtgtcctaagaacttcggcagttaact 19035239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 19041106 - 19041166
Alignment:
Q  1 ttcagatttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgattt 60  Q
    |||||||||| ||||||||||||||||||| ||||| || |||| |||||||||| |||||    
T  19041106 ttcagatttcctcggcagttaactaccgaggttttcttcggcagctaactgccgccgattt 19041166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 25497584 - 25497544
Alignment:
Q  12 tcggcagttaactaccgagattttcctc-gcagttaactgc 51  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  25497584 tcggcagttaactaccgagattttcctcggcagttaactgc 25497544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 541004 - 540957
Alignment:
Q  7 tttcatcggcagttaactaccgagattttcctcg-cagttaactgccg 53  Q
    |||| |||||||||||||||||||| |||||||| |||||||||||||    
T  541004 tttcctcggcagttaactaccgagaatttcctcgacagttaactgccg 540957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 28388509 - 28388564
Alignment:
Q  2 tcagatttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctg 56  Q
    |||| |||| ||||||||||||||||||| |||||||| |||||||||||| ||||    
T  28388509 tcagttttcttcggcagttaactaccgaggttttcctcggcagttaactgcagctg 28388564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 5847 - 5773
Alignment:
Q  14 ggcagttaactaccgagattttcctc-gcagttaactgccgctgatttactaaaacttcggcagttaactaccga 87  Q
    ||||||||||||||||| |||||||| ||| |||||||| |  |  || ||||||||||||||||||||| ||||    
T  5847 ggcagttaactaccgaggttttcctcggcaattaactgcagtcgtatttctaaaacttcggcagttaactgccga 5773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 8577055 - 8577005
Alignment:
Q  4 agatttcatcggcagttaactaccgagattttcctc-gcagttaactgccg 53  Q
    ||||||| ||||||||||||||||||| ||||| || ||||||||||||||    
T  8577055 agatttcctcggcagttaactaccgaggttttcttcggcagttaactgccg 8577005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 14280894 - 14280956
Alignment:
Q  6 atttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttactaaaa 67  Q
    ||||| ||||| ||||||||||||| |||||||| ||||||||||||||| | ||| ||||||    
T  14280894 atttcctcggccgttaactaccgaggttttcctcggcagttaactgccgccggtttcctaaaa 14280956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 19037470 - 19037548
Alignment:
Q  12 tcggcagttaactaccgagattttcctc-gcagttaactgccg-ctgatttactaaaacttcggcagttaactaccgaa 88  Q
    ||||||||||||||||||| |||||||| |||||||||||| | | |||||   |||| |||||||||||||| |||||    
T  19037470 tcggcagttaactaccgaggttttcctcggcagttaactgcagccggatttgagaaaatttcggcagttaactgccgaa 19037548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 28876727 - 28876673
Alignment:
Q  1 ttcagatttcatcggcagttaactaccgagattttcctc-gcagttaactgccgc 54  Q
    |||||||||| ||||||||||||| ||||| |||||||| | |||||||||||||    
T  28876727 ttcagatttcctcggcagttaactgccgaggttttcctcgggagttaactgccgc 28876673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 34122607 - 34122557
Alignment:
Q  2 tcagatttcatcggcagttaactaccgagattttcctc-gcagttaactgc 51  Q
    |||| |||| ||||||||||||||||||| |||||||| ||||||||||||    
T  34122607 tcagttttcctcggcagttaactaccgagcttttcctcggcagttaactgc 34122557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 42942480 - 42942522
Alignment:
Q  40 gcagttaactgccgctgatttactaaaacttcggcagttaact 82  Q
    |||||||| |||||||| ||| |||||||||||||||||||||    
T  42942480 gcagttaattgccgctggttttctaaaacttcggcagttaact 42942522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 5200387 - 5200432
Alignment:
Q  42 agttaactgccgctgatttactaaaacttcggcagttaactaccga 87  Q
    |||||||||| || ||||| ||||||||||| ||||||||||||||    
T  5200387 agttaactgcagccgattttctaaaacttcgacagttaactaccga 5200432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 42937264 - 42937195
Alignment:
Q  13 cggcagttaactaccgagattttcctcg-cagttaactgccgctgatttactaaaacttcggcagttaac 81  Q
    ||||| ||||||||||||  |||| ||| |||||||||||||| | ||| || |||||||||||||||||    
T  42937264 cggcacttaactaccgaggatttcttcggcagttaactgccgccggttttcttaaacttcggcagttaac 42937195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 51
Target Start/End: Original strand, 8047 - 8087
Alignment:
Q  12 tcggcagttaactaccgagattttcctc-gcagttaactgc 51  Q
    |||| ||||||||||||||||||||||| ||||||||||||    
T  8047 tcggtagttaactaccgagattttcctcggcagttaactgc 8087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 51
Target Start/End: Original strand, 4204211 - 4204251
Alignment:
Q  12 tcggcagttaactaccgagattttcctcg-cagttaactgc 51  Q
    ||||||||||||||||||| ||||||||| |||||||||||    
T  4204211 tcggcagttaactaccgaggttttcctcgacagttaactgc 4204251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0634 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 7502 - 7392
Alignment:
Q  1 ttcagatttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttact-aaaacttcggcagttaactaccgaaagatattttc 98  Q
    |||||||||| ||||||||||||||||||| |||||||| | ||| ||||||||| |  ||||| ||||||||||||||| ||| ||||| |  ||||||    
T  7502 ttcagatttcctcggcagttaactaccgaggttttcctcggtagtcaactgccgccgggttactaaaaacttcggcagtttactgccgaagggcattttc 7403  T
Q  99 gtaaattactc 109  Q
    ||||| |||||    
T  7402 gtaaagtactc 7392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0293 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0293
Description:

Target: scaffold0293; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 113
Target Start/End: Original strand, 717 - 825
Alignment:
Q  7 tttcatcggcagttaactaccgagattttcct-cgcagttaactgccgctgatttact-aaaacttcggcagttaactaccgaaagatattttcgtaaat 104  Q
    |||| ||||||||||||||||||| |||||||  ||||||||||||||| | ||| || ||||||||||||||| ||||||||| |  |||| ||||  |    
T  717 tttcctcggcagttaactaccgaggttttcctgggcagttaactgccgccggtttcctaaaaacttcggcagtttactaccgaagggcatttccgtattt 816  T
Q  105 tactcatgt 113  Q
    |||||||||    
T  817 tactcatgt 825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 236263 - 236358
Alignment:
Q  15 gcagttaactaccgagattttcctcg-cagttaactgccgctgatttactaaaacttcggcagttaactaccgaaagatattttcgtaaattactc 109  Q
    ||||||||||| |||| ||||||||| ||||| ||||||||   ||||||||||||||||||||||||  ||||| |  ||||||||||| |||||    
T  236263 gcagttaactatcgaggttttcctcggcagtttactgccgccagtttactaaaacttcggcagttaaccgccgaagggcattttcgtaaagtactc 236358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 236224 - 236272
Alignment:
Q  2 tcagatttcatcggcagttaactaccgagattttcctc-gcagttaact 49  Q
    ||||||||| ||||||||||||||||||  |||||||| ||||||||||    
T  236224 tcagatttcctcggcagttaactaccgaagttttcctctgcagttaact 236272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0494 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0494
Description:

Target: scaffold0494; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 87
Target Start/End: Complemental strand, 5409 - 5327
Alignment:
Q  7 tttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttac-taaaacttcggcagttaactaccga 87  Q
    |||| ||||||||||||||||||| |||||||| ||||||||||||||| | ||| | | |||||||||||||||||| ||||    
T  5409 tttcctcggcagttaactaccgaggttttcctcggcagttaactgccgccggtttccttcaaacttcggcagttaactgccga 5327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0494; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 936 - 892
Alignment:
Q  6 atttcatcggcagttaactaccgagattttcctc-gcagttaact 49  Q
    ||||| ||||||||||||||||||| |||||||| ||||||||||    
T  936 atttcctcggcagttaactaccgaggttttcctcggcagttaact 892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 22486 - 22436
Alignment:
Q  2 tcagatttcatcggcagttaactaccgagattttcctc-gcagttaactgc 51  Q
    |||| |||| |||||||||||||||||||||||||||| ||||||||||||    
T  22486 tcagttttcctcggcagttaactaccgagattttcctcagcagttaactgc 22436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0744 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0744
Description:

Target: scaffold0744; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 417 - 466
Alignment:
Q  6 atttcatcggcagttaactaccgagattttcctc-gcagttaactgccgc 54  Q
    ||||| ||||||||||||||||||| |||||||| |||||||||||||||    
T  417 atttcctcggcagttaactaccgaggttttcctcggcagttaactgccgc 466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 41013 - 41078
Alignment:
Q  3 cagatttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttactaaaa 67  Q
    |||||||| ||||||||||||| ||||| |||||||| ||||||||||||||| | ||| ||||||    
T  41013 cagatttcctcggcagttaactcccgaggttttcctcggcagttaactgccgccggtttcctaaaa 41078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 50125 - 50048
Alignment:
Q  7 tttcatcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttact-aaaacttcggcagttaact 82  Q
    |||| ||||||||||||||||||| |||||||| ||||||||||||||| | ||  || |||||||||||| ||||||    
T  50125 tttcctcggcagttaactaccgaggttttcctcggcagttaactgccgccggttccctaaaaacttcggcatttaact 50048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 84653 - 84581
Alignment:
Q  12 tcggcagttaactaccgagattttcctc-gcagttaactgccgctgatttact-aaaacttcggcagttaact 82  Q
    ||||||||||||||||||| |||||||| ||| ||||||||||| | | | || |||||||||||||||||||    
T  84653 tcggcagttaactaccgaggttttcctcggcacttaactgccgccggtgtcctaaaaacttcggcagttaact 84581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0283 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 114
Target Start/End: Original strand, 1642 - 1716
Alignment:
Q  40 gcagttaactgccgctgatttactaaaacttcggcagttaactaccgaaagatattttcgtaaattactcatgtt 114  Q
    ||||||||||||  | ||||| ||||||||||  ||||||||| |||||||||||||   |||||||||| ||||    
T  1642 gcagttaactgcaaccgattttctaaaacttcaacagttaactgccgaaagatatttaaataaattactcgtgtt 1716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 18284 - 18363
Alignment:
Q  3 cagatttcatcggcagttaactaccgagattttcctcg-cagttaactgccg-ctgatttactaaaacttcggcagttaac 81  Q
    |||||||  ||||||||||||||||||| ||||| ||| |||| |||||| | | ||||| ||||||||||||||||||||    
T  18284 cagattttctcggcagttaactaccgaggttttcttcgacagtaaactgcagtcggattt-ctaaaacttcggcagttaac 18363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 54560 - 54481
Alignment:
Q  3 cagatttcatcggcagttaactaccgagattttcctcg-cagttaactgccg-ctgatttactaaaacttcggcagttaac 81  Q
    |||||||  ||||||||||||||||||| ||||| ||| |||| |||||| | | ||||| ||||||||||||||||||||    
T  54560 cagattttctcggcagttaactaccgaggttttcttcgacagtaaactgcagtcggattt-ctaaaacttcggcagttaac 54481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 65391 - 65287
Alignment:
Q  12 tcggcagttaactaccgagattttcctcg-cagttaactgccgctgatttactaaaacttcggcagttaactaccgaaagatatttt-cgtaaattactc 109  Q
    ||||||||||||| ||||  ||||||||| ||||||||||| || ||||   | ||| |||||||||||||| ||||| || |||||  |||| ||||||    
T  65391 tcggcagttaactgccgaagttttcctcgacagttaactgcagccgattcttttaaatttcggcagttaactgccgaatgacattttgagtaatttactc 65292  T
Q  110 atgtt 114  Q
    |||||    
T  65291 atgtt 65287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University