View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11744_low_32 (Length: 204)
Name: NF11744_low_32
Description: NF11744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11744_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 17 - 190
Target Start/End: Original strand, 37315568 - 37315741
Alignment:
| Q |
17 |
aaaagaaagtaaaaaatgttaatatttttatgcgatcttacaatattgtcaaaaaattattaatgacgtaacataattccaggtaaagaaccattgccat |
116 |
Q |
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| T |
37315568 |
aaaagaaagaaaaaaatgttaatatttttatgcgatcttacaatattgtcaaaaaattattaatgacgtaacataattccaggtaaagaaccattgccat |
37315667 |
T |
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| Q |
117 |
ggtctagtagagtggaaattgctctagattcagcaagaggccttgaatacattcatgaacatactgtgcctatg |
190 |
Q |
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| T |
37315668 |
ggtctagtagagtggaaattgctctagattcagcaagaggccttgaatacattcatgaacatactgtgcctatg |
37315741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 36 - 187
Target Start/End: Original strand, 37239129 - 37239281
Alignment:
| Q |
36 |
taatatttttatgcgatcttacaatattgtcaaaaaattattaatgacg-taacataattccaggtaaagaaccattgccatggtctagtagagtggaaa |
134 |
Q |
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| T |
37239129 |
taatatttttatgtgattttacaatattgtcaaacagtcattaatgatggttagatgatttcaggtacagaaccattaccatggtctagtagagtgcaga |
37239228 |
T |
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| Q |
135 |
ttgctctagattcagcaagaggccttgaatacattcatgaacatactgtgcct |
187 |
Q |
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| T |
37239229 |
ttgctctagattcagccagaggcctagaatacattcatgaacacactgtgcct |
37239281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 180
Target Start/End: Original strand, 37198453 - 37198530
Alignment:
| Q |
103 |
agaaccattgccatggtctagtagagtggaaattgctctagattcagcaagaggccttgaatacattcatgaacatac |
180 |
Q |
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| T |
37198453 |
agaacctttgtcatggtctatcagggttaaaattgctctggattcagccagaggtcttgaatacattcacgaacatac |
37198530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 132 - 187
Target Start/End: Complemental strand, 37385392 - 37385337
Alignment:
| Q |
132 |
aaattgctctagattcagcaagaggccttgaatacattcatgaacatactgtgcct |
187 |
Q |
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| T |
37385392 |
aaattgctctggatgtagcaagaggccttgaatacattcatgagcattcagtgcct |
37385337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 103 - 180
Target Start/End: Original strand, 37203436 - 37203513
Alignment:
| Q |
103 |
agaaccattgccatggtctagtagagtggaaattgctctagattcagcaagaggccttgaatacattcatgaacatac |
180 |
Q |
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| T |
37203436 |
agaacctttgtcatggtctacaaggatgcaaattgcgctggattcagccagaggtcttgaatatattcatgaacatac |
37203513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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