View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11744_low_5 (Length: 379)
Name: NF11744_low_5
Description: NF11744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11744_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 18 - 367
Target Start/End: Complemental strand, 6060528 - 6060179
Alignment:
| Q |
18 |
ctcttaaagcaatatcttctatatcctgtgtcagacttagtacctattttggattttctatatattatccacgggagagttcgccaagaggtatagaatt |
117 |
Q |
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| T |
6060528 |
ctctcaaagcaatatcttctatatcctgtgtcagacttggtacctattttggattttctatatattatccacgggagagttcgccaagaggtatagaatt |
6060429 |
T |
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| Q |
118 |
atatttttgaaaaatctcagagttgtctagtttcttggaagggagcccttcttaataagcgagtagggcttgcagaacatctaagaggctaaaatctaat |
217 |
Q |
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| T |
6060428 |
acatttttgaaaaatctcagagttgtctagtttcttggaagggagcccttcttaataagcgagtagggcttgcagaacatttaagaggctaaaatctaat |
6060329 |
T |
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| Q |
218 |
taaattattaaggagttggtggttcttgatcttgcaactcttaatctttttattnnnnnnncttgtggaacttagagtaaatactgaagttcaacttcat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
6060328 |
taaattattaaggagttggtggttcttgatcttgcaactcttaatctttttattaaaaaaacttgtggaacttagagtaaatactgaagttcaacttcat |
6060229 |
T |
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| Q |
318 |
cctctgacttcagtcacttgtttcaagttactatttcaaattcgtctctg |
367 |
Q |
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| T |
6060228 |
cctctgacttcagtcacttgtttcaagttactatttcaaattcgtctctg |
6060179 |
T |
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