View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11744_low_6 (Length: 359)
Name: NF11744_low_6
Description: NF11744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11744_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 15 - 342
Target Start/End: Original strand, 30037336 - 30037663
Alignment:
| Q |
15 |
gatgaagagtattatggtttaagggaactaatggatccagtggtgagaaacacagccaacctgataggatttggaaggttcttagagttggcaatgcaat |
114 |
Q |
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| T |
30037336 |
gatgaagagtattatggtttaagggaactaatggatccagtggtgagaaacacagccaacctgataggatttggaaggttcttagagttggcaatgcaat |
30037435 |
T |
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| Q |
115 |
gcgttgaggaattggcttcagaccgaccaacgatgagtgaagttgtaaaagcgttagaaaccatactacaaaatgatggaattaatacaaattccacttc |
214 |
Q |
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| T |
30037436 |
gtgttgaggaattggcttcagaccgaccaacaatgagtgaagttgtgaaagcgttagaaaccatattacaaaatgatggaattaatacaaattccacttc |
30037535 |
T |
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| Q |
215 |
tgcttcatcatctgccaccgactttaatgcttctaagggtgctgcaatgagacatccttatattgataatacttttactaagaaggataatgttattgag |
314 |
Q |
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| T |
30037536 |
agcttcatcatctgccactgactttaatgcttctaagggtgctgcaatgagacatccttatattgataatacttttactaagaaggataatgttattgag |
30037635 |
T |
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| Q |
315 |
agtgatgcttttgattacagtggagggt |
342 |
Q |
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| T |
30037636 |
agtgatgcttttgattacagtggagggt |
30037663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 14 - 342
Target Start/End: Original strand, 30053373 - 30053701
Alignment:
| Q |
14 |
agatgaagagtattatggtttaagggaactaatggatccagtggtgagaaacacagccaacctgataggatttggaaggttcttagagttggcaatgcaa |
113 |
Q |
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| T |
30053373 |
agatgaagagtattatggtttaagggaactaatggatccagtggtgagaaacacagccaacctgataggatttggaaggttcttagagttggcaatgcaa |
30053472 |
T |
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| Q |
114 |
tgcgttgaggaattggcttcagaccgaccaacgatgagtgaagttgtaaaagcgttagaaaccatactacaaaatgatggaattaatacaaattccactt |
213 |
Q |
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|||||||||| ||||||||||||||||||||| |||||||||||||| ||||| |||||||||||| |||| || ||||| || | ||||||||| |||| |
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| T |
30053473 |
tgcgttgagggattggcttcagaccgaccaacaatgagtgaagttgtgaaagccttagaaaccatattacataacgatgggatgattacaaattctactt |
30053572 |
T |
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| Q |
214 |
ctgcttcatcatctgccaccgactttaatgcttctaagggtgctgcaatgagacatccttatattgataatacttttactaagaaggataatgttattga |
313 |
Q |
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| T |
30053573 |
cagcttcttcatctgccgctaattttgaagtttctaaaggtgctgcagcaagacatccttacattgatactctttttacaaagaaggatgatggtattga |
30053672 |
T |
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| Q |
314 |
gagtgatgcttttgattacagtggagggt |
342 |
Q |
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| T |
30053673 |
gagtgatgcttttgattacagtggagggt |
30053701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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