View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11744_low_7 (Length: 354)
Name: NF11744_low_7
Description: NF11744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11744_low_7 |
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| [»] chr2 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 16 - 354
Target Start/End: Complemental strand, 45514632 - 45514294
Alignment:
| Q |
16 |
aatgtgtgtgaatgcagacattcgtggagaagggttcatggctcaaaacattggatttgtgaacacagcggagctagatgcaagcgctgcagtggccgtt |
115 |
Q |
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| T |
45514632 |
aatgtgtgtgaatgcagacattcgtggagaagggttcatggctcaaaacattggatttgtgaacacagcggagctagatgcaagcgctgcagtggccgtt |
45514533 |
T |
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| Q |
116 |
cggaacgaagcaaacaacagcatattcttccaatgctccatccaaggattccaagacacattgtgggctgtttccggaagacaattctacaaaaactgtg |
215 |
Q |
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| T |
45514532 |
cggaacgaagcaaacaacagcatattcttccaatgctccatccaaggattccaagacaccttgtgggctgtttccggtagacaattctacaaaaactgtg |
45514433 |
T |
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| Q |
216 |
aaatatacggcactgtcgacttcatctacggcaacgctgccgctgtatttcaagactgcatggtttatgcacgctatagacagtttgtgacattcaccgc |
315 |
Q |
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| T |
45514432 |
aaatatacggcactgtcgacttcatctacggcaacgctgccgctgtatttcaagactgcatggtttatgcacgctatagacagtttgtgacattcaccgc |
45514333 |
T |
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| Q |
316 |
acagtcacgtgaaagtccatatgaaaaaacaggtttcac |
354 |
Q |
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| T |
45514332 |
acagtcacgtgaaagtccatatgaaaaaacaggtttcac |
45514294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 38 - 354
Target Start/End: Complemental strand, 43699808 - 43699492
Alignment:
| Q |
38 |
cgtggagaagggttcatggctcaaaacattggatttgtgaacacagcggagctagatgcaagcgctgcagtggccgttcggaacgaagcaaacaacagca |
137 |
Q |
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| T |
43699808 |
cgtggagaagggctcatagctcaagacattggatttgtgaactcagcggggacagatgcaggtcctgcaatggccgttcgaaacgaggcaaacaatagta |
43699709 |
T |
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| Q |
138 |
tattcttccaatgctccatccaaggattccaagacacattgtgggctgtttccggaagacaattctacaaaaactgtgaaatatacggcactgtcgactt |
237 |
Q |
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| T |
43699708 |
tattccttcggtgctccattcaaggattccaagacaccttatttgctgtttccggaagacaattctacaaaaactgtgaaatatatggtaccgtcgactt |
43699609 |
T |
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| Q |
238 |
catctacggcaacgctgccgctgtatttcaagactgcatggtttatgcacgctatagacagtttgtgacattcaccgcacagtcacgtgaaagtccatat |
337 |
Q |
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| T |
43699608 |
catcttcggcaacgctgcagctgtatttcaagactgtatggtttatgcacgctatcgacagttcgtggtattcaccgcacaatcacgtggaaatccatct |
43699509 |
T |
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| Q |
338 |
gaaaaaacaggtttcac |
354 |
Q |
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| T |
43699508 |
gaaaaaacaggtttcac |
43699492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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