View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11744_low_8 (Length: 348)

Name: NF11744_low_8
Description: NF11744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11744_low_8
NF11744_low_8
[»] chr4 (39 HSPs)
chr4 (159-310)||(24481402-24481552)
chr4 (11-92)||(24481254-24481335)
chr4 (241-310)||(24421216-24421285)
chr4 (173-278)||(24481922-24482027)
chr4 (234-310)||(24470726-24470802)
chr4 (234-310)||(24477394-24477470)
chr4 (241-308)||(24477641-24477708)
chr4 (305-348)||(24481530-24481573)
chr4 (241-310)||(24470438-24470507)
chr4 (241-310)||(24470630-24470699)
chr4 (234-299)||(24476989-24477054)
chr4 (249-310)||(24477457-24477518)
chr4 (234-310)||(24420921-24420997)
chr4 (238-310)||(24470774-24470846)
chr4 (192-303)||(24482145-24482256)
chr4 (234-296)||(24420633-24420695)
chr4 (256-310)||(24421327-24421381)
chr4 (256-310)||(24470534-24470588)
chr4 (241-310)||(24420880-24420949)
chr4 (253-302)||(24421036-24421085)
chr4 (221-278)||(24481562-24481619)
chr4 (234-310)||(24421113-24421189)
chr4 (234-310)||(24421257-24421333)
chr4 (234-310)||(24470390-24470466)
chr4 (234-310)||(24470582-24470658)
chr4 (173-233)||(24481820-24481880)
chr4 (173-244)||(24482054-24482125)
chr4 (234-284)||(24420969-24421019)
chr4 (241-303)||(24421408-24421470)
chr4 (241-303)||(24470253-24470315)
chr4 (256-310)||(24470342-24470396)
chr4 (280-310)||(24477392-24477422)
chr4 (235-284)||(24420730-24420779)
chr4 (319-348)||(24421263-24421292)
chr4 (319-348)||(24470431-24470460)
chr4 (319-348)||(24470623-24470652)
chr4 (319-348)||(24477400-24477429)
chr4 (234-310)||(24477076-24477152)
chr4 (238-310)||(24477494-24477566)
[»] scaffold0879 (7 HSPs)
scaffold0879 (241-310)||(4489-4558)
scaffold0879 (234-310)||(4777-4853)
scaffold0879 (253-302)||(4689-4738)
scaffold0879 (234-310)||(4441-4517)
scaffold0879 (234-310)||(4585-4661)
scaffold0879 (234-284)||(4755-4805)
scaffold0879 (319-348)||(4482-4511)
[»] chr2 (8 HSPs)
chr2 (266-310)||(41900266-41900310)
chr2 (234-310)||(41900282-41900358)
chr2 (235-302)||(41899851-41899918)
chr2 (235-308)||(41899995-41900068)
chr2 (266-308)||(41900458-41900500)
chr2 (241-310)||(41899953-41900022)
chr2 (319-348)||(41900288-41900317)
chr2 (208-244)||(41899998-41900034)
[»] chr1 (4 HSPs)
chr1 (227-302)||(52821558-52821633)
chr1 (258-302)||(11879682-11879726)
chr1 (258-302)||(11902374-11902418)
chr1 (234-302)||(11904953-11905021)


Alignment Details
Target: chr4 (Bit Score: 140; Significance: 3e-73; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 159 - 310
Target Start/End: Original strand, 24481402 - 24481552
Alignment:
Q  159 tttgtagacatattgtggaggaggaggtgattcgtaaacatatggaggaggtggcggcgacttgtagacatatggtggtggaggtggcgacttgtataca 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  24481402 tttgtagacatattgtggaggaggaggtgattcgtaaacatatggaggaggtggcggtgacttgtagacatatggtggtggaggtggcgacttgtataca 24481501  T
Q  259 tatggtgggggtggtgatggagatggtggaggaggagacttgtagacatatg 310  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  24481502 tatggt-ggggtggtgatggagatggtggaggaggagacttgtagacatatg 24481552  T

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Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 24481254 - 24481335
Alignment:
Q  11 catagggagcgggtggtggggatttatagatatatggtggagactcataaacatatggagggggtataggtttgtagtagta 92  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24481254 catagggagcgggtggtggggatttatagatatatggtggagactcataaacatatggagggggtataggtttgtagtagta 24481335  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 241 - 310
Target Start/End: Original strand, 24421216 - 24421285
Alignment:
Q  241 ggtggcgacttgtatacatatggtgggggtggtgatggagatggtggaggaggagacttgtagacatatg 310  Q
    ||||| |||||||| ||||| |||||||| ||||| || |||||||||||||||||||||||||||||||    
T  24421216 ggtggtgacttgtaaacataaggtgggggaggtgagggtgatggtggaggaggagacttgtagacatatg 24421285  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 173 - 278
Target Start/End: Original strand, 24481922 - 24482027
Alignment:
Q  173 gtggaggaggaggtgattcgtaaacatatggaggaggtggcggcgacttgtagacatatggtggtggaggtggcgacttgtatacatatggtgggggtgg 272  Q
    |||||||||| ||||| | ||| || |||||||||||||| || |||||||| |||||||| || || || || |||||||||||||| || || |||||    
T  24481922 gtggaggaggtggtgacttgtacacgtatggaggaggtgggggtgacttgtacacatatggaggaggtggcggtgacttgtatacatacggaggaggtgg 24482021  T
Q  273 tgatgg 278  Q
    ||||||    
T  24482022 tgatgg 24482027  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 234 - 310
Target Start/End: Complemental strand, 24470802 - 24470726
Alignment:
Q  234 tggtggaggtggcgacttgtatacatatggtgggggtggtgatggagatggtggaggaggagacttgtagacatatg 310  Q
    |||||| ||||| || ||||| ||||||||||| ||||| ||||| ||||||||||| || ||||||||||||||||    
T  24470802 tggtgggggtggagatttgtagacatatggtggtggtggagatggggatggtggaggtggtgacttgtagacatatg 24470726  T

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Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 234 - 310
Target Start/End: Original strand, 24477394 - 24477470
Alignment:
Q  234 tggtggaggtggcgacttgtatacatatggtgggggtggtgatggagatggtggaggaggagacttgtagacatatg 310  Q
    ||||||||| || |||||||| |||||||| || |||||||||||||| ||| ||||||||  ||||||||||||||    
T  24477394 tggtggaggaggagacttgtagacatatggaggtggtggtgatggagaaggtagaggaggactcttgtagacatatg 24477470  T

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Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 241 - 308
Target Start/End: Original strand, 24477641 - 24477708
Alignment:
Q  241 ggtggcgacttgtatacatatggtgggggtggtgatggagatggtggaggaggagacttgtagacata 308  Q
    ||||| |||||||| |||||||| || |||||||| ||||||||||| ||||||||||| ||||||||    
T  24477641 ggtggggacttgtacacatatggaggaggtggtgagggagatggtggtggaggagacttatagacata 24477708  T

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Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 305 - 348
Target Start/End: Complemental strand, 24481573 - 24481530
Alignment:
Q  305 catatgtgtacaacccacctccatatgtctacaagtctcctcct 348  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  24481573 catatgtgtacaccccacctccatatgtctacaagtctcctcct 24481530  T

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Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 310
Target Start/End: Complemental strand, 24470507 - 24470438
Alignment:
Q  241 ggtggcgacttgtatacatatggtgggggtggtgatggagatggtggaggaggagacttgtagacatatg 310  Q
    ||||| |||||||| ||||| || ||||| ||||| || | |||||||||||||||||||||||||||||    
T  24470507 ggtggtgacttgtaaacatagggcgggggaggtgagggtgttggtggaggaggagacttgtagacatatg 24470438  T

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Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 310
Target Start/End: Complemental strand, 24470699 - 24470630
Alignment:
Q  241 ggtggcgacttgtatacatatggtgggggtggtgatggagatggtggaggaggagacttgtagacatatg 310  Q
    ||||||||||| || | ||| |||||||| || || || |||||||||||||||||||||||||||||||    
T  24470699 ggtggcgacttataaatatagggtgggggaggagaaggtgatggtggaggaggagacttgtagacatatg 24470630  T

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Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 299
Target Start/End: Original strand, 24476989 - 24477054
Alignment:
Q  234 tggtggaggtggcgacttgtatacatatggtgggggtggtgatggagatggtggaggaggagactt 299  Q
    |||||||||||| ||||||||||||||||||||||| || || |||||||| ||||| || |||||    
T  24476989 tggtggaggtggtgacttgtatacatatggtgggggaggagagggagatggaggaggtggtgactt 24477054  T

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Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 310
Target Start/End: Original strand, 24477457 - 24477518
Alignment:
Q  249 cttgtatacatatggtgggggtggtgatggagatggtggaggaggagacttgtagacatatg 310  Q
    |||||| |||||||||||||| ||||| |||||||| ||||| || ||||||||||||||||    
T  24477457 cttgtagacatatggtgggggaggtgaaggagatggaggaggtggtgacttgtagacatatg 24477518  T

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Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 234 - 310
Target Start/End: Original strand, 24420921 - 24420997
Alignment:
Q  234 tggtggaggtggcgacttgtatacatatggtgggggtggtgatggagatggtggaggaggagacttgtagacatatg 310  Q
    |||||| ||||| || ||||| |||||||| || ||||| ||||| ||||||||||| || ||||||||||||||||    
T  24420921 tggtgggggtggagatttgtagacatatggaggtggtggagatggggatggtggaggtggtgacttgtagacatatg 24420997  T

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Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 238 - 310
Target Start/End: Complemental strand, 24470846 - 24470774
Alignment:
Q  238 ggaggtggcgacttgtatacatatggtgggggtggtgatggagatggtggaggaggagacttgtagacatatg 310  Q
    |||||||| ||||| |||||||||||||| || ||||| || |||||||| || ||||| |||||||||||||    
T  24470846 ggaggtggtgacttatatacatatggtggagggggtgaaggtgatggtgggggtggagatttgtagacatatg 24470774  T

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Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 303
Target Start/End: Original strand, 24482145 - 24482256
Alignment:
Q  192 gtaaacatatggaggaggtggcggcgacttgtagacatatggtggtggaggtggcgacttgtatacatatggtgggggtggtgatggagatggtggagga 291  Q
    ||||||||| || ||||| || || |||||||| |||||||| || || ||||| || || || ||||| || || |||||||||||||||||||| ||     
T  24482145 gtaaacataaggtggaggaggtggtgacttgtacacatatggaggaggtggtggtgatttatagacataaggaggtggtggtgatggagatggtggtggt 24482244  T
Q  292 ggagacttgtag 303  Q
    ||||| ||||||    
T  24482245 ggagatttgtag 24482256  T

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Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 296
Target Start/End: Original strand, 24420633 - 24420695
Alignment:
Q  234 tggtggaggtggcgacttgtatacatatggtgggggtggtgatggagatggtggaggaggaga 296  Q
    |||||| ||||| |||||||| | |||||| || |||||||| ||||||||||||||||||||    
T  24420633 tggtggtggtggtgacttgtagatatatggaggcggtggtgaaggagatggtggaggaggaga 24420695  T

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Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 310
Target Start/End: Original strand, 24421327 - 24421381
Alignment:
Q  256 acatatggtgggggtggtgatggagatggtggaggaggagacttgtagacatatg 310  Q
    |||||||||||||| ||||| |||||||| ||||| || ||||||||||||||||    
T  24421327 acatatggtgggggaggtgaaggagatggaggaggtggtgacttgtagacatatg 24421381  T

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Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 310
Target Start/End: Complemental strand, 24470588 - 24470534
Alignment:
Q  256 acatatggtgggggtggtgatggagatggtggaggaggagacttgtagacatatg 310  Q
    |||||||||||||| ||||| |||||||| ||||| || ||||||||||||||||    
T  24470588 acatatggtgggggaggtgaaggagatggaggaggtggtgacttgtagacatatg 24470534  T

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Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 241 - 310
Target Start/End: Original strand, 24420880 - 24420949
Alignment:
Q  241 ggtggcgacttgtatacatatggtgggggtggtgatggagatggtggaggaggagacttgtagacatatg 310  Q
    ||||| ||||| |||||||||||||| || ||||| || |||||||| || ||||| |||||||||||||    
T  24420880 ggtggtgacttatatacatatggtggagggggtgaaggtgatggtgggggtggagatttgtagacatatg 24420949  T

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Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 302
Target Start/End: Original strand, 24421036 - 24421085
Alignment:
Q  253 tatacatatggtgggggtggtgatggagatggtggaggaggagacttgta 302  Q
    ||||||||||||||||| || || || |||||||||||||||||||||||    
T  24421036 tatacatatggtgggggaggggagggtgatggtggaggaggagacttgta 24421085  T

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Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 221 - 278
Target Start/End: Original strand, 24481562 - 24481619
Alignment:
Q  221 tgtagacatatggtggtggaggtggcgacttgtatacatatggtgggggtggtgatgg 278  Q
    |||| ||||||||||| ||||||||||||||||| | |||||| || |||||||||||    
T  24481562 tgtacacatatggtgggggaggtggcgacttgtagatatatggaggaggtggtgatgg 24481619  T

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Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 310
Target Start/End: Original strand, 24421113 - 24421189
Alignment:
Q  234 tggtggaggtggcgacttgtatacatatggtgggggtggtgatggagatggtggaggaggagacttgtagacatatg 310  Q
    |||||| ||||| |||||||| | |||||| || ||||| ||||| |||||||| || || ||||||||||||||||    
T  24421113 tggtggtggtggggacttgtaaatatatggaggtggtggagatggggatggtggtggtggtgacttgtagacatatg 24421189  T

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Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 310
Target Start/End: Original strand, 24421257 - 24421333
Alignment:
Q  234 tggtggaggtggcgacttgtatacatatggtgggggtggtgatggagatggtggaggaggagacttgtagacatatg 310  Q
    ||||||||| || |||||||| |||||||| || |||||||||||||| ||||| || |||  ||| ||||||||||    
T  24421257 tggtggaggaggagacttgtagacatatggaggtggtggtgatggagagggtggtggtggactcttatagacatatg 24421333  T

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Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 310
Target Start/End: Complemental strand, 24470466 - 24470390
Alignment:
Q  234 tggtggaggtggcgacttgtatacatatggtgggggtggtgatggagatggtggaggaggagacttgtagacatatg 310  Q
    ||||||||| || |||||||| |||||||| || |||||||||||||| ||||| || |||  ||| ||||||||||    
T  24470466 tggtggaggaggagacttgtagacatatggaggtggtggtgatggagagggtggtggtggactcttatagacatatg 24470390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 310
Target Start/End: Complemental strand, 24470658 - 24470582
Alignment:
Q  234 tggtggaggtggcgacttgtatacatatggtgggggtggtgatggagatggtggaggaggagacttgtagacatatg 310  Q
    ||||||||| || |||||||| |||||||| || |||||||||||||| ||||| || |||  ||| ||||||||||    
T  24470658 tggtggaggaggagacttgtagacatatggaggtggtggtgatggagagggtggtggtggactcttatagacatatg 24470582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 233
Target Start/End: Original strand, 24481820 - 24481880
Alignment:
Q  173 gtggaggaggaggtgattcgtaaacatatggaggaggtggcggcgacttgtagacatatgg 233  Q
    |||||||||| ||||| | ||| ||||||||||||||||| || |||||||| ||||||||    
T  24481820 gtggaggaggtggtgacttgtacacatatggaggaggtgggggtgacttgtacacatatgg 24481880  T

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Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 244
Target Start/End: Original strand, 24482054 - 24482125
Alignment:
Q  173 gtggaggaggaggtgattcgtaaacatatggaggaggtggcggcgacttgtagacatatggtggtggaggtg 244  Q
    |||||||||| ||||| | ||| || |||||||||||||| || |||||||| |||||||| ||||| ||||    
T  24482054 gtggaggaggtggtgacttgtacacgtatggaggaggtgggggtgacttgtatacatatggaggtggcggtg 24482125  T

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Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 284
Target Start/End: Original strand, 24420969 - 24421019
Alignment:
Q  234 tggtggaggtggcgacttgtatacatatggtgggggtggtgatggagatgg 284  Q
    |||||||||||| |||||||| ||||||||||| || || |||||||||||    
T  24420969 tggtggaggtggtgacttgtagacatatggtggagggggggatggagatgg 24421019  T

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Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 303
Target Start/End: Original strand, 24421408 - 24421470
Alignment:
Q  241 ggtggcgacttgtatacatatggtgggggtggtgatggagatggtggaggaggagacttgtag 303  Q
    ||||| |||||||| ||||| || || |||||||| |||||||||||||| ||||| ||||||    
T  24421408 ggtggggacttgtacacatacggaggaggtggtgagggagatggtggaggtggagatttgtag 24421470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 303
Target Start/End: Complemental strand, 24470315 - 24470253
Alignment:
Q  241 ggtggcgacttgtatacatatggtgggggtggtgatggagatggtggaggaggagacttgtag 303  Q
    ||||| |||||||| ||||| || || |||||||| |||||||||||||| ||||| ||||||    
T  24470315 ggtggggacttgtacacatacggaggaggtggtgagggagatggtggaggtggagatttgtag 24470253  T

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Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 310
Target Start/End: Complemental strand, 24470396 - 24470342
Alignment:
Q  256 acatatggtgggggtggtgatggagatggtggaggaggagacttgtagacatatg 310  Q
    |||||||||||||| ||||| || ||||| ||||| || ||||||||||||||||    
T  24470396 acatatggtgggggaggtgaaggtgatggaggaggtggtgacttgtagacatatg 24470342  T

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Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 310
Target Start/End: Original strand, 24477392 - 24477422
Alignment:
Q  280 gatggtggaggaggagacttgtagacatatg 310  Q
    |||||||||||||||||||||||||||||||    
T  24477392 gatggtggaggaggagacttgtagacatatg 24477422  T

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Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 284
Target Start/End: Original strand, 24420730 - 24420779
Alignment:
Q  235 ggtggaggtggcgacttgtatacatatggtgggggtggtgatggagatgg 284  Q
    ||||||||||| |||||||| |||||||||||||| || || ||||||||    
T  24420730 ggtggaggtggtgacttgtaaacatatggtgggggaggagagggagatgg 24420779  T

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Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 348
Target Start/End: Complemental strand, 24421292 - 24421263
Alignment:
Q  319 ccacctccatatgtctacaagtctcctcct 348  Q
    ||||||||||||||||||||||||||||||    
T  24421292 ccacctccatatgtctacaagtctcctcct 24421263  T

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Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 348
Target Start/End: Original strand, 24470431 - 24470460
Alignment:
Q  319 ccacctccatatgtctacaagtctcctcct 348  Q
    ||||||||||||||||||||||||||||||    
T  24470431 ccacctccatatgtctacaagtctcctcct 24470460  T

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Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 348
Target Start/End: Original strand, 24470623 - 24470652
Alignment:
Q  319 ccacctccatatgtctacaagtctcctcct 348  Q
    ||||||||||||||||||||||||||||||    
T  24470623 ccacctccatatgtctacaagtctcctcct 24470652  T

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Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 348
Target Start/End: Complemental strand, 24477429 - 24477400
Alignment:
Q  319 ccacctccatatgtctacaagtctcctcct 348  Q
    ||||||||||||||||||||||||||||||    
T  24477429 ccacctccatatgtctacaagtctcctcct 24477400  T

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Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 310
Target Start/End: Original strand, 24477076 - 24477152
Alignment:
Q  234 tggtggaggtggcgacttgtatacatatggtgggggtggtgatggagatggtggaggaggagacttgtagacatatg 310  Q
    |||||| ||||| || ||||| |||||||| || ||||| ||||||||||| ||||| || | ||| ||||||||||    
T  24477076 tggtgggggtggagatttgtaaacatatggaggtggtggggatggagatggaggaggtggtgccttatagacatatg 24477152  T

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Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 310
Target Start/End: Original strand, 24477494 - 24477566
Alignment:
Q  238 ggaggtggcgacttgtatacatatggtgggggtggtgatggagatggtggaggaggagacttgtagacatatg 310  Q
    |||||||| |||||||| |||||||| || || ||||| ||||||||||| || |||  ||| ||||||||||    
T  24477494 ggaggtggtgacttgtagacatatggaggtggaggtgagggagatggtggtggtggactcttatagacatatg 24477566  T

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Target: scaffold0879 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: scaffold0879
Description:

Target: scaffold0879; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 241 - 310
Target Start/End: Complemental strand, 4558 - 4489
Alignment:
Q  241 ggtggcgacttgtatacatatggtgggggtggtgatggagatggtggaggaggagacttgtagacatatg 310  Q
    ||||| |||||||| |||||||||||||| ||||| || |||||||||||||||||||||||||||||||    
T  4558 ggtggtgacttgtaaacatatggtgggggaggtgagggtgatggtggaggaggagacttgtagacatatg 4489  T

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Target: scaffold0879; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 234 - 310
Target Start/End: Complemental strand, 4853 - 4777
Alignment:
Q  234 tggtggaggtggcgacttgtatacatatggtgggggtggtgatggagatggtggaggaggagacttgtagacatatg 310  Q
    |||||| ||||| || ||||| |||||||| || ||||| ||||| ||||||||||| || ||||||||||||||||    
T  4853 tggtgggggtggagatttgtagacatatggaggtggtggagatggggatggtggaggtggtgacttgtagacatatg 4777  T

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Target: scaffold0879; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 302
Target Start/End: Complemental strand, 4738 - 4689
Alignment:
Q  253 tatacatatggtgggggtggtgatggagatggtggaggaggagacttgta 302  Q
    ||||||||||||||||| || || || |||||||||||||||||||||||    
T  4738 tatacatatggtgggggaggggagggtgatggtggaggaggagacttgta 4689  T

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Target: scaffold0879; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 310
Target Start/End: Complemental strand, 4517 - 4441
Alignment:
Q  234 tggtggaggtggcgacttgtatacatatggtgggggtggtgatggagatggtggaggaggagacttgtagacatatg 310  Q
    ||||||||| || |||||||| |||||||| || |||||||||||||| ||||| || |||  ||| ||||||||||    
T  4517 tggtggaggaggagacttgtagacatatggaggtggtggtgatggagagggtggtggtggactcttatagacatatg 4441  T

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Target: scaffold0879; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 310
Target Start/End: Complemental strand, 4661 - 4585
Alignment:
Q  234 tggtggaggtggcgacttgtatacatatggtgggggtggtgatggagatggtggaggaggagacttgtagacatatg 310  Q
    |||||| ||||| |||||||| | |||||| || ||||| ||||| |||||||| || || ||||||||||||||||    
T  4661 tggtggtggtggggacttgtaaatatatggaggtggtggagatggggatggtggtggtggtgacttgtagacatatg 4585  T

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Target: scaffold0879; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 284
Target Start/End: Complemental strand, 4805 - 4755
Alignment:
Q  234 tggtggaggtggcgacttgtatacatatggtgggggtggtgatggagatgg 284  Q
    |||||||||||| |||||||| ||||||||||| || || |||||||||||    
T  4805 tggtggaggtggtgacttgtagacatatggtggagggggggatggagatgg 4755  T

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Target: scaffold0879; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 348
Target Start/End: Original strand, 4482 - 4511
Alignment:
Q  319 ccacctccatatgtctacaagtctcctcct 348  Q
    ||||||||||||||||||||||||||||||    
T  4482 ccacctccatatgtctacaagtctcctcct 4511  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 266 - 310
Target Start/End: Original strand, 41900266 - 41900310
Alignment:
Q  266 ggggtggtgatggagatggtggaggaggagacttgtagacatatg 310  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||    
T  41900266 ggggtagtgatgcagatggtggaggaggagacttgtagacatatg 41900310  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 234 - 310
Target Start/End: Original strand, 41900282 - 41900358
Alignment:
Q  234 tggtggaggtggcgacttgtatacatatggtgggggtggtgatggagatggtggaggaggagacttgtagacatatg 310  Q
    ||||||||| || |||||||| |||||||| || |||||||| ||||| || || |||||||| |||||||||||||    
T  41900282 tggtggaggaggagacttgtagacatatggaggtggtggtgaaggagagggaggtggaggagatttgtagacatatg 41900358  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 302
Target Start/End: Original strand, 41899851 - 41899918
Alignment:
Q  235 ggtggaggtggcgacttgtatacatatggtgggggtggtgatggagatggtggaggaggagacttgta 302  Q
    ||||||||||| |||||||| |||||||| || || ||||| || |||||||| ||||||||||||||    
T  41899851 ggtggaggtggagacttgtaaacatatggaggaggcggtgaaggtgatggtgggggaggagacttgta 41899918  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 308
Target Start/End: Original strand, 41899995 - 41900068
Alignment:
Q  235 ggtggaggtggcgacttgtatacatatggtgggggtggtgatggagatggtggaggaggagacttgtagacata 308  Q
    ||||| ||||| |||||||| ||||||||||| || ||||| ||||| || ||||| ||||| |||||||||||    
T  41899995 ggtggtggtggggacttgtagacatatggtggtggaggtgaaggagagggaggaggtggagagttgtagacata 41900068  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 308
Target Start/End: Original strand, 41900458 - 41900500
Alignment:
Q  266 ggggtggtgatggagatggtggaggaggagacttgtagacata 308  Q
    ||||| |||||| ||||||||||||||||||||| ||||||||    
T  41900458 ggggtagtgatgcagatggtggaggaggagacttatagacata 41900500  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 310
Target Start/End: Original strand, 41899953 - 41900022
Alignment:
Q  241 ggtggcgacttgtatacatatggtgggggtggtgatggagatggtggaggaggagacttgtagacatatg 310  Q
    ||||| |||||||| |||||||| || |||||||| || || ||||| || || ||||||||||||||||    
T  41899953 ggtggggacttgtaaacatatggaggaggtggtgagggggaaggtggtggtggggacttgtagacatatg 41900022  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 348
Target Start/End: Complemental strand, 41900317 - 41900288
Alignment:
Q  319 ccacctccatatgtctacaagtctcctcct 348  Q
    ||||||||||||||||||||||||||||||    
T  41900317 ccacctccatatgtctacaagtctcctcct 41900288  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 244
Target Start/End: Original strand, 41899998 - 41900034
Alignment:
Q  208 ggtggcggcgacttgtagacatatggtggtggaggtg 244  Q
    ||||| || ||||||||||||||||||||||||||||    
T  41899998 ggtggtggggacttgtagacatatggtggtggaggtg 41900034  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 227 - 302
Target Start/End: Original strand, 52821558 - 52821633
Alignment:
Q  227 catatggtggtggaggtggcgacttgtatacatatggtgggggtggtgatggagatggtggaggaggagacttgta 302  Q
    |||| ||||| |||||||| |||||||||||||| || || || || ||||| || |||||||| |||||||||||    
T  52821558 catacggtgggggaggtggtgacttgtatacataaggaggtggaggggatggggaaggtggaggtggagacttgta 52821633  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 302
Target Start/End: Complemental strand, 11879726 - 11879682
Alignment:
Q  258 atatggtgggggtggtgatggagatggtggaggaggagacttgta 302  Q
    ||||||||| || ||||| ||||||||||| ||||||||||||||    
T  11879726 atatggtggtggaggtgagggagatggtggtggaggagacttgta 11879682  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 302
Target Start/End: Complemental strand, 11902418 - 11902374
Alignment:
Q  258 atatggtgggggtggtgatggagatggtggaggaggagacttgta 302  Q
    |||||| || |||||||| ||||||||||| ||||||||||||||    
T  11902418 atatggaggaggtggtgagggagatggtggtggaggagacttgta 11902374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 302
Target Start/End: Complemental strand, 11905021 - 11904953
Alignment:
Q  234 tggtggaggtggcgacttgtatacatatggtgggggtggtgatggagatggtggaggaggagacttgta 302  Q
    |||||||||||| ||||||||    |||||||| ||||| ||||| ||||||||||| || ||||||||    
T  11905021 tggtggaggtggtgacttgtaatagtatggtggtggtggagatggtgatggtggagggggggacttgta 11904953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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