View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_high_10 (Length: 673)
Name: NF11745_high_10
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 597; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 597; E-Value: 0
Query Start/End: Original strand, 15 - 660
Target Start/End: Complemental strand, 24224825 - 24224168
Alignment:
| Q |
15 |
atcatgcactccccgttcatccccgtttccctcttaaacttccttgctgactctaataacaaattcgttggtgttggaatcaaagaagatgttgacaagc |
114 |
Q |
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| T |
24224825 |
atcatgcactcccccttcatccctgtttccctcttaaacttccttgctgactctaataacaaattcgttggtgttggaatcaaagaagatgttgacaagc |
24224726 |
T |
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| Q |
115 |
ttatgaaagattataatattaccgtttcgaattacgttgatttgagaaaccttgctgctgaggtcatggatgatcaggaaatgttgaagactgggattaa |
214 |
Q |
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| T |
24224725 |
ttatgaaagattataatattaccgtttcgaattacgttgatttgagaaaccttgctgctgaggtcatggatgatcatgaaatgttgaagactgggattaa |
24224626 |
T |
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| Q |
215 |
gagtttgacgcaaaaggtgattgggaaaactcttgtgaaaccgaagaaggtttcgatgagtagatgggattatccttggcttaatgttgatcaggttaaa |
314 |
Q |
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| T |
24224625 |
gagtttgacgcaaaaggtgattgggaaaactcttgtgaaaccgaagaaggtttcgatgagtagatgggattatccttggcttaatgttgatcaggttaaa |
24224526 |
T |
|
| Q |
315 |
tatgctactgttgatgcttttgtttcgtttgagattggtcgccgtctttatttaaagcagaattgatttcaatgattcatgtat------------gttt |
402 |
Q |
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| T |
24224525 |
tatgctactgttgatgcttttgtttcgtttgagattggtcgccgtctttattcaaagcagaattgatttcaatgattcatgtatgttctgtgtttggttt |
24224426 |
T |
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| Q |
403 |
tgttttatctttgtgatttttcagtgctgttatttatacttgaatgaatgtgttagatttggggaatttttcttgtgtgtttgttatgtgtgttaattac |
502 |
Q |
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| T |
24224425 |
tgttttatctttgtgatttttcagtgctgttatttatacttgaatgaatgtgttagatttggggaatttttcttgtgtgtttgttatgtgtgttaattac |
24224326 |
T |
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| Q |
503 |
agttattgtttctggatgttggattgaagtcattaaaacttaagatttgatggatttatcatttgtgcctgtttttcttttctttgtctacttttctgta |
602 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24224325 |
agttattgtttctggatgttggattgaagtcattaaaacttaagatttgatggatttatcatttgtgcctgtttttcttttctttgtctacttttctgta |
24224226 |
T |
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| Q |
603 |
tggttagtttttggatttggaactgtcgaatatgttatttcgtgtgtttgattctctg |
660 |
Q |
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| T |
24224225 |
tggttagtttttggatttgaaactgtcgaatatgttatttcgtgtgtttgattctctg |
24224168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 263 - 366
Target Start/End: Complemental strand, 24210008 - 24209905
Alignment:
| Q |
263 |
ggtttcgatgagtagatgggattatccttggcttaatgttgatcaggttaaatatgctactgttgatgcttttgtttcgtttgagattggtcgccgtctt |
362 |
Q |
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| T |
24210008 |
ggtttcgatgagtaggtgggataatccttggctcagtgctattcaggttaaatttgcaactgttgatgcttttgtttcctttgagattggtcgtcgtctc |
24209909 |
T |
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| Q |
363 |
tatt |
366 |
Q |
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|||| |
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| T |
24209908 |
tatt |
24209905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 303 - 366
Target Start/End: Original strand, 24229581 - 24229644
Alignment:
| Q |
303 |
gatcaggttaaatatgctactgttgatgcttttgtttcgtttgagattggtcgccgtctttatt |
366 |
Q |
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| T |
24229581 |
gatcaggttaagtatgctactgttgatgcttttctttcctttgagattgctcgtcgtctttatt |
24229644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 293 - 366
Target Start/End: Complemental strand, 24215732 - 24215659
Alignment:
| Q |
293 |
gcttaatgttgatcaggttaaatatgctactgttgatgcttttgtttcgtttgagattggtcgccgtctttatt |
366 |
Q |
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| T |
24215732 |
gcttagtgctgatcaggttaagtatgcaactgttgatgcttttgtttcatttgagatcggttgtcgtctctatt |
24215659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 521 - 570
Target Start/End: Complemental strand, 24215444 - 24215395
Alignment:
| Q |
521 |
ttggattgaagtcattaaaacttaagatttgatggatttatcatttgtgc |
570 |
Q |
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| T |
24215444 |
ttggattgaagttattaaaacttcagatttgaaggatttttcaattgtgc |
24215395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 404 - 440
Target Start/End: Complemental strand, 24215611 - 24215575
Alignment:
| Q |
404 |
gttttatctttgtgatttttcagtgctgttatttata |
440 |
Q |
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| T |
24215611 |
gttttatctttgtgattttttagtgctgttatatata |
24215575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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