View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_high_102 (Length: 340)
Name: NF11745_high_102
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_high_102 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 18 - 326
Target Start/End: Original strand, 3714193 - 3714496
Alignment:
| Q |
18 |
tcacataagcgacaaatatcatttcaacaaggttccatgtaacatgacatgacacacccttcatatcccactgtctctgtcagaaattagacgctagaaa |
117 |
Q |
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| T |
3714193 |
tcacataagcgacaaatatcatttcaacaaggttccatgtaacatgacatgacacacccttcatatcccactgtctctgtcagaaattagacgctagaaa |
3714292 |
T |
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| Q |
118 |
gtaagatgttgattttcatacttcatattttgttacagatgtacatgcacattatcacaatttcaacagttaataatcaaatcaaatcaaatcaatggca |
217 |
Q |
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| T |
3714293 |
gtaagatgttgattttcatacttcatattttgttacagatgtacatgcacattatcacaatttcaacagttaataatc-----aaatcaaatcgatggca |
3714387 |
T |
|
| Q |
218 |
cttatcactttactcttaaaagtgacttacttgtgttaaagaaaccaaatcccttaaattatatactgacactttaagaaaacttattagcttttaccaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3714388 |
cttatcactttactcttaaaagtgacttacttgtgttaaagaaaccaaatcccttaaattatatactgacactttaagaaaacttattagcttttaccaa |
3714487 |
T |
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| Q |
318 |
atatatatc |
326 |
Q |
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||||||||| |
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| T |
3714488 |
atatatatc |
3714496 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 52 - 91
Target Start/End: Complemental strand, 17032351 - 17032312
Alignment:
| Q |
52 |
ccatgtaacatgacatgacacacccttcatatcccactgt |
91 |
Q |
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| T |
17032351 |
ccatgtaacatgacaagacacacccttcataacccactgt |
17032312 |
T |
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