View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11745_high_103 (Length: 338)
Name: NF11745_high_103
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_high_103 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 11 - 338
Target Start/End: Complemental strand, 8023153 - 8022836
Alignment:
| Q |
11 |
cacagaattagacgtcgcaagccaacctaatcaggtaaagaaaaattacaccgactgtctgacagtatatataaattaaactcttaaactaatttaagtt |
110 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
8023153 |
cacagaattagacgtcgcgagccaacctaatcaggtaaagaaaaattacaccgactgtctgacagtatatataaat----------aactaatttaagtt |
8023064 |
T |
|
| Q |
111 |
tcccacttatgatttgtgtaggcattgtacttcgagcaggttcttagagaggcacattctcaccctgggattcagggcattgtaatgtggacagcgtggt |
210 |
Q |
| |
|
||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8023063 |
tcctacttatgatttgtgtaggcgttgtacttcgagcaggttcttagagaggcacattctcaccctgggattcagggcattgtaatgtggacagcgtggt |
8022964 |
T |
|
| Q |
211 |
caccgcaaggttgttataggatttgcttgactgataacaatttcaagaacttgcctgcaggcgatgttgtcgatcagttgatcaatgaatgggggagagc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8022963 |
caccgcaaggttgttataggatttgcttgactgataacaatttcaagaacttgcctgcaggcgatgttgtcgatcagttgatcaatgaatgggggagagc |
8022864 |
T |
|
| Q |
311 |
agaaacatcagggactacagaccaaaat |
338 |
Q |
| |
|
||||| ||||||||| |||||||||||| |
|
|
| T |
8022863 |
agaaaaatcagggacgacagaccaaaat |
8022836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 100 - 283
Target Start/End: Complemental strand, 21543254 - 21543071
Alignment:
| Q |
100 |
taatttaagtttcccacttatgatttgtgtaggcattgtacttcgagcaggttcttagagaggcacattctcaccctgggattcagggcattgtaatgtg |
199 |
Q |
| |
|
||||||| |||| ||||| |||||||||||||||| |||||| ||||| ||||||||||||||||| |||||||| ||||||| |||||||||||||| |
|
|
| T |
21543254 |
taatttaggttttccactaatgatttgtgtaggcagggtacttagagcaagttcttagagaggcacactctcacccagggattcgaggcattgtaatgtg |
21543155 |
T |
|
| Q |
200 |
gacagcgtggtcaccgcaaggttgttataggatttgcttgactgataacaatttcaagaacttgcctgcaggcgatgttgtcga |
283 |
Q |
| |
|
|||||| ||||| || |||||||||| ||| || |||||||| ||||||||||||||||| || ||| |||||||||||||||| |
|
|
| T |
21543154 |
gacagcatggtcgccacaaggttgttttagaatgtgcttgacagataacaatttcaagaatttacctacaggcgatgttgtcga |
21543071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 138 - 256
Target Start/End: Original strand, 28153681 - 28153799
Alignment:
| Q |
138 |
tacttcgagcaggttcttagagaggcacattctcaccctgggattcagggcattgtaatgtggacagcgtggtcaccgcaaggttgttataggatttgct |
237 |
Q |
| |
|
||||| ||||| | ||||||||||||||| |||||||| ||| |||| || ||||||||||||||||| ||| ||||||| ||||| |||| ||| || | |
|
|
| T |
28153681 |
tacttggagcaagctcttagagaggcacactctcacccaggggttcaaggtattgtaatgtggacagcatggacaccgcagggttgctataagatgtgtt |
28153780 |
T |
|
| Q |
238 |
tgactgataacaatttcaa |
256 |
Q |
| |
|
|||| |||||||||||||| |
|
|
| T |
28153781 |
tgacagataacaatttcaa |
28153799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 28153529 - 28153565
Alignment:
| Q |
12 |
acagaattagacgtcgcaagccaacctaatcaggtaa |
48 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||| |
|
|
| T |
28153529 |
acagaattagatgttgcaagccaacctaatcaggtaa |
28153565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 137 - 213
Target Start/End: Original strand, 1365402 - 1365478
Alignment:
| Q |
137 |
gtacttcgagcaggttcttagagaggcacattctcaccctgggattcagggcattgtaatgtggacagcgtggtcac |
213 |
Q |
| |
|
|||||| ||||||||||||||||| ||||| ||| ||| |||||||||||||||||||||||||| | ||||||| |
|
|
| T |
1365402 |
gtacttggagcaggttcttagagaagcacacactcgcccaaggattcagggcattgtaatgtggacaacatggtcac |
1365478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University