View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_high_104 (Length: 337)
Name: NF11745_high_104
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_high_104 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 19 - 321
Target Start/End: Complemental strand, 648355 - 648053
Alignment:
| Q |
19 |
agaaagtgacatattctgatagcaaccaaggatttacatgcaatgaaattgagtttagcagagaaaagtttacatccgctgaccaacttatctagcatgt |
118 |
Q |
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| T |
648355 |
agaaagtgacatattctgatagcaaccaaggatttacatgcaatgaaattgagttaagcagagaaaagtttacatccgctgaccaacttatctagcatgt |
648256 |
T |
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| Q |
119 |
atcaaaattttaaataataaaaagttcaaaaggattcagaaagtaagtttatttaacacaaataacaggatatggatatcagaatctactttgcaacttc |
218 |
Q |
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| T |
648255 |
atcaaaattttaaataataaaaagttcaaaaggattcagaaagtaagtttatttaacacaaataacaggatatggatatcagaatctactttgcaacttc |
648156 |
T |
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| Q |
219 |
agaaagttcatgaaataaactacaatcagatagctaccattttactatggaattctcatccgagtcatccattccagacccattgtcaaaaattgtaatc |
318 |
Q |
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| T |
648155 |
agaaagttcatgaaataaactacaatcagatagctaccattttactatggaattctcatccgagtcatccattccagacccactgtcaaaaattgtaatc |
648056 |
T |
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| Q |
319 |
ttc |
321 |
Q |
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||| |
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| T |
648055 |
ttc |
648053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 37 - 321
Target Start/End: Complemental strand, 685579 - 685301
Alignment:
| Q |
37 |
atagcaaccaaggatttacatgcaatgaaattgagtttagcagagaaaa-gtttacatccgctgaccaacttatctagcatgtatcaaaattttaaataa |
135 |
Q |
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|||||||| ||||||| ||||||||||||||||||| | |||||||| ||| | || | |||||||| ||||||||| |||||||||||||||||| |
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| T |
685579 |
atagcaactaaggattcacatgcaatgaaattgagtcaaaaagagaaaaagttgaattcagttgaccaacaaatctagcatctatcaaaattttaaataa |
685480 |
T |
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| Q |
136 |
taaaaagttcaaaaggattcagaaagtaagtttattt-aacacaaataacaggatatggatatcagaatctactttgcaacttcagaaagttcatgaaat |
234 |
Q |
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| T |
685479 |
taaaaagctacaaaggcttctgaaagtaaggttattttaactcaagtaacaggatat------cagaatgtacttaggaacttcaaaaa--tcatgaaat |
685388 |
T |
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| Q |
235 |
aaactacaatcagatagctaccattttactatggaattctcatccgagtcatccattccagacccattgtcaaaaattgtaatcttc |
321 |
Q |
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| T |
685387 |
aaactacaatcagatagctaccattttactagggaattctcattagagtcatccattccagagccattgtcaaaaattgtaatcttc |
685301 |
T |
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