View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_high_107 (Length: 337)
Name: NF11745_high_107
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_high_107 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 15 - 321
Target Start/End: Complemental strand, 23697539 - 23697233
Alignment:
| Q |
15 |
cacagaacaagaaacaaaaataaaactcctactcaatattacatatcacaatcatattttcaaatatacatcaatcaagcaattgatgtaacgttgtgct |
114 |
Q |
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| T |
23697539 |
cacaaaacaagaaacaaaaataaaactcctactcaatattacatatcaaaatcatattttcaaatatatatcaatcaagcaattgatgtaacgttgtgct |
23697440 |
T |
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| Q |
115 |
atgcaatttcactcgtcatgccatttctatccagttgcacacttataatgggagtcagtattccaagtggatccacatccatagcaaaattgattaccac |
214 |
Q |
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| T |
23697439 |
atgcaatttcactcgtcatgcaatttctatccagttgcacacttataatgggagtcagtattccaagtggatccacatccatagcaaaattgattaccac |
23697340 |
T |
|
| Q |
215 |
acctgcggataaaatcaatatgccaaattttttcttacaaatcaaagcagaataactaatatttaagcaagcacccaaaataaaaatgcaaaagtagaat |
314 |
Q |
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|||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
23697339 |
acctgcggataaaaacaatatgacaaatttttttttacaaatcaaagcagaataactaatatttaagcaagcaccaaaaataaaaatgcaaaagtagaat |
23697240 |
T |
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| Q |
315 |
tcttaac |
321 |
Q |
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||||||| |
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| T |
23697239 |
tcttaac |
23697233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 220
Target Start/End: Original strand, 23700587 - 23700648
Alignment:
| Q |
159 |
ataatgggagtcagtattccaagtggatccacatccatagcaaaattgattaccacacctgc |
220 |
Q |
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| T |
23700587 |
ataatgggactgattattccaaggagaaccacagccatagcaaaattgattgccacacctgc |
23700648 |
T |
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