View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11745_high_109 (Length: 335)

Name: NF11745_high_109
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11745_high_109
NF11745_high_109
[»] chr3 (2 HSPs)
chr3 (31-317)||(50917489-50917776)
chr3 (32-110)||(50918310-50918385)
[»] chr5 (4 HSPs)
chr5 (134-317)||(42352186-42352372)
chr5 (134-290)||(27558553-27558712)
chr5 (38-109)||(42352415-42352486)
chr5 (32-99)||(27558442-27558509)


Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 31 - 317
Target Start/End: Complemental strand, 50917776 - 50917489
Alignment:
Q  31 ttgatattcattcatttatttctagttatacattagaaggactggaaactaccaacatttcctgctacaggtttacatagaaatttccataggaatgtat 130  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  50917776 ttgatattcattcatttatttctagttatacattagaaggactagaaactaccaacatttcctgctacaggtctacatagaaatttccataggaatgtat 50917677  T
Q  131 ttgataaatccataggaattttccattagtataactctttctctggcaatcaaatcaatagtccccga-cctgattcttcctcgtaactgaattccacct 229  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  50917676 ttgataaatccataggaatgttccattagtataactctttctctggcaatcaaatcaatagtccccgatcccgattcttcctcgtaactgaattccacct 50917577  T
Q  230 cttccgaatcaacattaatcaactccagccaagctgatgaataagcaccgaataggccacaccagcacactttcatagaaacatttgc 317  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  50917576 cttccgaatcaacattaatcaactcaagccaagctgatgaataagcaccgaataggccacaccagcacactttcatggaaacatttgc 50917489  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 32 - 110
Target Start/End: Complemental strand, 50918385 - 50918310
Alignment:
Q  32 tgatattcattcatttatttctagttatacattagaaggactggaaactaccaacatttcctgctacaggtttacatag 110  Q
    |||||||||||| ||| |||||||||||||||||||   ||| |||| ||| ||||||||||||||||||| |||||||    
T  50918385 tgatattcattcgtttgtttctagttatacattaga---actagaaaatacaaacatttcctgctacaggtctacatag 50918310  T

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Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 134 - 317
Target Start/End: Complemental strand, 42352372 - 42352186
Alignment:
Q  134 ataaatccataggaattttccattagtataactctttctctggcaa--tcaaatcaatagtccccga-cctgattcttcctcgtaactgaattccacctc 230  Q
    ||||||| |||| ||| |||||||  |||||||||||||| ||||   |||||||||||||| || | ||||||||||||||||||||||||||||||||    
T  42352372 ataaatcaatagaaatgttccattgatataactctttctccggcacactcaaatcaatagtcaccaatcctgattcttcctcgtaactgaattccacctc 42352273  T
Q  231 ttccgaatcaacattaatcaactccagccaagctgatgaataagcaccgaataggccacaccagcacactttcatagaaacatttgc 317  Q
    ||| ||||||||| |||||||||   ||  |||||||||||||||||| ||||||||||||| || ||||||||| |||||||||||    
T  42352272 ttctgaatcaacagtaatcaactttggctgagctgatgaataagcaccaaataggccacacccgcgcactttcatggaaacatttgc 42352186  T

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Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 134 - 290
Target Start/End: Original strand, 27558553 - 27558712
Alignment:
Q  134 ataaatccataggaattttccattagtataactctttctctggcaa--tcaaatcaatagtccccga-cctgattcttcctcgtaactgaattccacctc 230  Q
    ||||||| |||| ||| ||| |||  |||||||||||||||||||   |||||||||||||| || | |||||||||||||| |||||||||||||||||    
T  27558553 ataaatcaatagaaatgttctattgatataactctttctctggcacactcaaatcaatagtcaccaatcctgattcttcctcataactgaattccacctc 27558652  T
Q  231 ttccgaatcaacattaatcaactccagccaagctgatgaataagcaccgaataggccaca 290  Q
    ||| ||||||||| ||||||||| | ||| ||||||||||||||||| ||| ||||||||    
T  27558653 ttctgaatcaacagtaatcaacttcggccgagctgatgaataagcactgaaaaggccaca 27558712  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 109
Target Start/End: Complemental strand, 42352486 - 42352415
Alignment:
Q  38 tcattcatttatttctagttatacattagaaggactggaaactaccaacatttcctgctacaggtttacata 109  Q
    |||||||||||||||||||||||||||||||| ||| |||| ||| |||||||| |||||||||| ||||||    
T  42352486 tcattcatttatttctagttatacattagaagaactagaaaatacaaacatttcttgctacaggtctacata 42352415  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 99
Target Start/End: Original strand, 27558442 - 27558509
Alignment:
Q  32 tgatattcattcatttatttctagttatacattagaaggactggaaactaccaacatttcctgctaca 99  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||| |||  | ||||| |||||||    
T  27558442 tgatattcattcatttatttctagttatacatcagaagaactggaaaatacatatatttcttgctaca 27558509  T

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