View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11745_high_111 (Length: 333)

Name: NF11745_high_111
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11745_high_111
NF11745_high_111
[»] chr8 (10 HSPs)
chr8 (1-231)||(5793513-5793741)
chr8 (1-86)||(29918535-29918620)
chr8 (1-65)||(17108304-17108368)
chr8 (1-67)||(6388599-6388665)
chr8 (1-67)||(36274971-36275036)
chr8 (1-67)||(12468312-12468378)
chr8 (1-67)||(30903974-30904040)
chr8 (2-40)||(35747309-35747346)
chr8 (1-86)||(8545424-8545509)
chr8 (1-86)||(28345419-28345504)
[»] chr4 (25 HSPs)
chr4 (1-85)||(16575046-16575130)
chr4 (1-155)||(42907821-42907974)
chr4 (2-86)||(21714051-21714135)
chr4 (1-85)||(33516149-33516233)
chr4 (1-86)||(7334261-7334344)
chr4 (1-66)||(36919057-36919122)
chr4 (4-86)||(21956890-21956971)
chr4 (1-59)||(37384207-37384265)
chr4 (10-59)||(4741318-4741367)
chr4 (1-86)||(8843880-8843965)
chr4 (1-86)||(8856844-8856929)
chr4 (2-67)||(19549004-19549069)
chr4 (1-42)||(39086090-39086131)
chr4 (1-40)||(30034608-30034647)
chr4 (3-80)||(12075713-12075790)
chr4 (3-86)||(35304592-35304675)
chr4 (4-68)||(43351469-43351533)
chr4 (1-41)||(55783438-55783478)
chr4 (1-41)||(55847620-55847660)
chr4 (7-86)||(9280965-9281044)
chr4 (4-67)||(24474536-24474599)
chr4 (4-86)||(12505606-12505688)
chr4 (1-67)||(25265242-25265307)
chr4 (1-67)||(33616210-33616276)
chr4 (6-67)||(50376446-50376507)
[»] chr2 (13 HSPs)
chr2 (1-66)||(13531878-13531943)
chr2 (1-156)||(17845396-17845552)
chr2 (1-68)||(30696853-30696920)
chr2 (1-67)||(25210306-25210372)
chr2 (1-60)||(13954674-13954733)
chr2 (1-60)||(14095881-14095940)
chr2 (4-68)||(40359276-40359340)
chr2 (6-86)||(11958949-11959029)
chr2 (1-41)||(31600888-31600928)
chr2 (1-41)||(35248501-35248541)
chr2 (1-68)||(29656828-29656895)
chr2 (4-67)||(34544405-34544468)
chr2 (2-86)||(34214732-34214815)
[»] chr1 (16 HSPs)
chr1 (5-86)||(39219191-39219272)
chr1 (1-67)||(43513123-43513189)
chr1 (3-86)||(48125758-48125841)
chr1 (1-62)||(16903444-16903505)
chr1 (6-86)||(33293595-33293675)
chr1 (3-68)||(13692575-13692641)
chr1 (1-67)||(47644953-47645019)
chr1 (2-60)||(48576219-48576277)
chr1 (4-41)||(2581505-2581542)
chr1 (1-86)||(8880377-8880462)
chr1 (2-59)||(23719533-23719590)
chr1 (4-85)||(36421698-36421779)
chr1 (1-86)||(42729019-42729104)
chr1 (23-86)||(5290372-5290436)
chr1 (18-81)||(5293490-5293553)
chr1 (2-64)||(5703271-5703332)
[»] chr7 (7 HSPs)
chr7 (1-67)||(31345459-31345525)
chr7 (1-86)||(4101475-4101560)
chr7 (1-60)||(11472813-11472872)
chr7 (1-62)||(6557825-6557886)
chr7 (1-38)||(43550539-43550576)
chr7 (2-86)||(29292636-29292720)
chr7 (6-82)||(37217942-37218017)
[»] scaffold1322 (1 HSPs)
scaffold1322 (1-82)||(1039-1120)
[»] chr3 (8 HSPs)
chr3 (1-67)||(37032192-37032258)
chr3 (4-86)||(40890278-40890359)
chr3 (1-41)||(27937667-27937707)
chr3 (1-41)||(30904935-30904975)
chr3 (16-67)||(4553134-4553184)
chr3 (3-42)||(26207213-26207252)
chr3 (1-41)||(772913-772953)
chr3 (1-41)||(14216408-14216448)
[»] chr6 (11 HSPs)
chr6 (1-82)||(14321795-14321876)
chr6 (6-42)||(34179128-34179164)
chr6 (3-86)||(372857-372939)
chr6 (1-40)||(9402517-9402556)
chr6 (2-40)||(32054392-32054430)
chr6 (1-39)||(34346136-34346174)
chr6 (2-67)||(10925537-10925602)
chr6 (1-68)||(20348991-20349059)
chr6 (4-86)||(13769003-13769085)
chr6 (2-34)||(8320922-8320954)
chr6 (2-38)||(29341180-29341216)
[»] chr5 (10 HSPs)
chr5 (6-67)||(35584050-35584110)
chr5 (1-68)||(12709436-12709504)
chr5 (1-68)||(12770686-12770754)
chr5 (1-60)||(16311395-16311453)
chr5 (4-67)||(27900496-27900559)
chr5 (4-86)||(29664902-29664984)
chr5 (4-80)||(39887183-39887259)
chr5 (6-60)||(38972855-38972909)
chr5 (2-67)||(457467-457532)
chr5 (1-86)||(12457445-12457530)
[»] scaffold0264 (1 HSPs)
scaffold0264 (1-41)||(17575-17615)
[»] scaffold0157 (1 HSPs)
scaffold0157 (4-86)||(14789-14871)


Alignment Details
Target: chr8 (Bit Score: 158; Significance: 5e-84; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 5793513 - 5793741
Alignment:
Q  1 gagtgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacatttatgacgagtttgggtatgtgcgggtacgtact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||    
T  5793513 gagtgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacatttaggacgagtttgagtatgtgtgggtacgtact 5793612  T
Q  101 tatatctccattacttgtctcatatata-ccatgttttgaaatcggagaaaactcaatcaaagcgggaaaaacacgttaatttagatttggtttgagcgg 199  Q
    |||||||||||||||||| ||||| ||| |||| |||||||   | ||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  5793613 tatatctccattacttgtgtcatacatacccatattttgaa---gaagaaaactcaatcaaagcggggaaaacacgttaatttagatttggtttcagcgg 5793709  T
Q  200 atacccgcttactctgttatcatgtctaaata 231  Q
     ||||| | |||| ||||||||||||||||||    
T  5793710 gtacccacatactttgttatcatgtctaaata 5793741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 29918535 - 29918620
Alignment:
Q  1 gagtgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacatttatgacgagtttgggtatg 86  Q
    |||||||||||||||||||||||||||||||||||||||||  | |||| ||||||||||||||||||  |||| ||||| |||||    
T  29918535 gagtgaaatgatttagggtttgagtttctatttatataaaagaggtaataaattgattttttacatttgggacgggtttgtgtatg 29918620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 17108304 - 17108368
Alignment:
Q  1 gagtgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttaca 65  Q
    ||||||||| ||||||||||| |||||||||||||||||||  |||||| |||||||||||||||    
T  17108304 gagtgaaattatttagggtttaagtttctatttatataaaatggataataaattgattttttaca 17108368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 6388665 - 6388599
Alignment:
Q  1 gagtgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacatt 67  Q
    |||||||||||||||||||||| |||||| |||||||||||  | |||| |||||||||| ||||||    
T  6388665 gagtgaaatgatttagggtttgggtttctgtttatataaaatgggtaataaattgattttctacatt 6388599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 36274971 - 36275036
Alignment:
Q  1 gagtgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacatt 67  Q
    |||||||||||||||||||| | ||||||||||||||||||  |||| | |||||||||||||||||    
T  36274971 gagtgaaatgatttagggttgg-gtttctatttatataaaagggatagtaaattgattttttacatt 36275036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 12468378 - 12468312
Alignment:
Q  1 gagtgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacatt 67  Q
    ||||||||| ||||||| |||| |||||| |||||||||||| | |||| | |||||||| ||||||    
T  12468378 gagtgaaataatttaggatttgcgtttctctttatataaaaagggtaataagttgattttctacatt 12468312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 30903974 - 30904040
Alignment:
Q  1 gagtgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacatt 67  Q
    ||||||||||||||| |||||  ||||||||||||||||||    |||| |||||||||| ||||||    
T  30903974 gagtgaaatgatttaaggttttggtttctatttatataaaatgtgtaataaattgattttctacatt 30904040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 35747346 - 35747309
Alignment:
Q  2 agtgaaatgatttagggtttgagtttctatttatataaa 40  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  35747346 agtgaaatgatttagg-tttgagtttctatttatataaa 35747309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 8545509 - 8545424
Alignment:
Q  1 gagtgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacatttatgacgagtttgggtatg 86  Q
    ||||||||||||||||||||||  ||||| |||||||||||    |  | |||||||||| |||||||  |||||||||| |||||    
T  8545509 gagtgaaatgatttagggtttggatttctgtttatataaaaggagttgtaaattgattttctacatttgggacgagtttgagtatg 8545424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 28345419 - 28345504
Alignment:
Q  1 gagtgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacatttatgacgagtttgggtatg 86  Q
    ||||||||||||||||  |||  ||||||||||||||||||  | ||||  ||| ||||| |||||| | ||| ||||||||||||    
T  28345419 gagtgaaatgatttagaatttcggtttctatttatataaaaggggtaatatatttattttctacattcaggacaagtttgggtatg 28345504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 16575046 - 16575130
Alignment:
Q  1 gagtgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacatttatgacgagtttgggtat 85  Q
    ||||||||||||||| | ||||||||||||||||||| |||| | |||| |||| |||||||||||||| |||||||||||||||    
T  16575046 gagtgaaatgatttatgatttgagtttctatttatattaaaagggtaataaattaattttttacatttaagacgagtttgggtat 16575130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 42907821 - 42907974
Alignment:
Q  1 gagtgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacatttatgacgagtttgggtatgtgc---gggtacgt 97  Q
    |||||||||||||||||||||||||||||||||||||||||  | || | |||||||||| ||||||   |||||||||||||||| ||   ||||  ||    
T  42907821 gagtgaaatgatttagggtttgagtttctatttatataaaagag-tagtaaattgattttctacattcgggacgagtttgggtatgggctcggggtgggt 42907919  T
Q  98 acttatatctccattacttgtctcatatataccatgttttgaaatcggagaaaactca 155  Q
    || |||||| |||||||| ||| | |||   || ||||||||| ||||||||||||||    
T  42907920 acctatatccccattactcgtcccgtat---ccgtgttttgaattcggagaaaactca 42907974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 21714135 - 21714051
Alignment:
Q  2 agtgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacatttatgacgagtttgggtatg 86  Q
    ||||||||||||||||||||||||||||||||||||||||  | |||| |||| ||||| |||||||  ||||||||| ||||||    
T  21714135 agtgaaatgatttagggtttgagtttctatttatataaaagaggtaataaattaattttctacatttgagacgagtttaggtatg 21714051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 33516233 - 33516149
Alignment:
Q  1 gagtgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacatttatgacgagtttgggtat 85  Q
    ||||||||||||||||||||||||||| |||||||||||||  | ||||  |||||||||||||||||  |||| ||||||||||    
T  33516233 gagtgaaatgatttagggtttgagtttttatttatataaaaggggtaatacattgattttttacatttgagacgggtttgggtat 33516149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 7334344 - 7334261
Alignment:
Q  1 gagtgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacatttatgacgagtttgggtatg 86  Q
    |||||||||||||||| |||||||||||||||  |||||||| |||||| ||||||||||  ||||||  ||||||||||| ||||    
T  7334344 gagtgaaatgatttagagtttgagtttctatt--tataaaaacgataataaattgattttcaacatttgggacgagtttggatatg 7334261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 36919057 - 36919122
Alignment:
Q  1 gagtgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacat 66  Q
    |||||||||||||||| |||||||||||||||||||||||| || |||| || ||||||| |||||    
T  36919057 gagtgaaatgatttagagtttgagtttctatttatataaaagtggtaataaactgattttctacat 36919122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 21956971 - 21956890
Alignment:
Q  4 tgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacatttatgacgagtttgggtatg 86  Q
    ||||||||||||||||||| |||| ||||||||| |||| | |||| |||||||||| ||||||  | |||||||||||||||    
T  21956971 tgaaatgatttagggtttgggtttttatttatat-aaaagggtaataaattgattttctacattcgtaacgagtttgggtatg 21956890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 37384207 - 37384265
Alignment:
Q  1 gagtgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattt 59  Q
    |||||||||||||||||||||||  ||||||||||||||||  |||||| |||||||||    
T  37384207 gagtgaaatgatttagggtttgaacttctatttatataaaagggataataaattgattt 37384265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 4741367 - 4741318
Alignment:
Q  10 gatttagggtttgagtttctatttatataaaaatgataattaattgattt 59  Q
    ||||||||||||||||||||||||||||||||  |||||| |||||||||    
T  4741367 gatttagggtttgagtttctatttatataaaatggataataaattgattt 4741318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 8843965 - 8843880
Alignment:
Q  1 gagtgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacatttatgacgagtttgggtatg 86  Q
    ||||||||||||||||| ||| ||||||||||||||| |||  | |||| |||| ||||| |||||| | |||| |||||||||||    
T  8843965 gagtgaaatgatttaggatttaagtttctatttatatgaaaggggtaataaattaattttctacattcacgacgggtttgggtatg 8843880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 8856929 - 8856844
Alignment:
Q  1 gagtgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacatttatgacgagtttgggtatg 86  Q
    ||||||||||||||||| ||| ||||||||||||||| |||  | |||| |||| ||||| |||||| | |||| |||||||||||    
T  8856929 gagtgaaatgatttaggatttaagtttctatttatatgaaaggggtaataaattaattttctacattcacgacgggtttgggtatg 8856844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 19549069 - 19549004
Alignment:
Q  2 agtgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacatt 67  Q
    |||||||||||||| ||||||||||| | |||||||||||  |||||| |||||| ||||||||||    
T  19549069 agtgaaatgatttaaggtttgagtttttgtttatataaaatggataatgaattgaatttttacatt 19549004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 39086090 - 39086131
Alignment:
Q  1 gagtgaaatgatttagggtttgagtttctatttatataaaaa 42  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  39086090 gagtgaaatgatttagggtttaagtttctatttatataaaaa 39086131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 30034608 - 30034647
Alignment:
Q  1 gagtgaaatgatttagggtttgagtttctatttatataaa 40  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  30034608 gagtgaaatgatttagggtttgggtttctatttatataaa 30034647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 80
Target Start/End: Complemental strand, 12075790 - 12075713
Alignment:
Q  3 gtgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacatttatgacgagtttg 80  Q
    ||||||||||| || |||| |||||||||||||||||||  | |||| |||||||||| ||||||   ||||||||||    
T  12075790 gtgaaatgattcagagttttagtttctatttatataaaatgggtaataaattgattttctacattccggacgagtttg 12075713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 35304675 - 35304592
Alignment:
Q  3 gtgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacatt-tatgacgagtttgggtatg 86  Q
    |||||||||||||| |||||||||||| ||||||| |||| | |||| |||||||||  |||||| | ||| |||||||||||||    
T  35304675 gtgaaatgatttagagtttgagtttctttttatat-aaaagggtaataaattgatttcctacattctttgatgagtttgggtatg 35304592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 43351533 - 43351469
Alignment:
Q  4 tgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacattt 68  Q
    |||||||||| ||||||||||||| ||||||| |||||  | |||| ||||||||||| ||||||    
T  43351533 tgaaatgattcagggtttgagtttttatttatgtaaaagaggtaataaattgatttttcacattt 43351469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 55783438 - 55783478
Alignment:
Q  1 gagtgaaatgatttagggtttgagtttctatttatataaaa 41  Q
    ||||||||||||||||| |||||||||||||| ||||||||    
T  55783438 gagtgaaatgatttaggatttgagtttctattcatataaaa 55783478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 55847620 - 55847660
Alignment:
Q  1 gagtgaaatgatttagggtttgagtttctatttatataaaa 41  Q
    ||||||||||||||||| |||||||||||||| ||||||||    
T  55847620 gagtgaaatgatttaggatttgagtttctattcatataaaa 55847660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 9281044 - 9280965
Alignment:
Q  7 aatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacatttatgacgagtttgggtatg 86  Q
    ||||||||||||||||| ||||||| |||||||||  |||||| |||| ||||| || ||| | ||| |||||| |||||    
T  9281044 aatgatttagggtttgaatttctatctatataaaagggataataaatttattttctatattcaggacaagtttgagtatg 9280965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 24474599 - 24474536
Alignment:
Q  4 tgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacatt 67  Q
    |||||||| ||||| | |||||||||||||||||||||  |||||  | |||||||||||||||    
T  24474599 tgaaatgaattaggatatgagtttctatttatataaaagggataaaaatttgattttttacatt 24474536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 12505688 - 12505606
Alignment:
Q  4 tgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacatttatgacgagtttgggtatg 86  Q
    ||||||||||||  |||| |||||||||||||||||||  |  ||| ||||||| |||||| || | |||| |||||||||||    
T  12505688 tgaaatgatttaatgtttaagtttctatttatataaaaggggaaataaattgatgttttaccttcaggacgggtttgggtatg 12505606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 25265307 - 25265242
Alignment:
Q  1 gagtgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacatt 67  Q
    |||| |||||||||||  ||||||||||||||||||| | || |||||| |||||||||| ||||||    
T  25265307 gagtaaaatgatttagaatttgagtttctatttatat-agaaggataataaattgattttctacatt 25265242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 33616276 - 33616210
Alignment:
Q  1 gagtgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacatt 67  Q
    |||||||||||||||||||||   ||| |||||||||||||  | |||| |||||||||| ||||||    
T  33616276 gagtgaaatgatttagggttttgatttttatttatataaaaggggtaataaattgattttctacatt 33616210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 50376507 - 50376446
Alignment:
Q  6 aaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacatt 67  Q
    |||| |||||| |||| |||||||||||||||||||  || ||| |||||||||| ||||||    
T  50376507 aaataatttagcgttttagtttctatttatataaaatggaaaataaattgattttctacatt 50376446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 13531878 - 13531943
Alignment:
Q  1 gagtgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacat 66  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||| |||||    
T  13531878 gagtgaaatgatttagggtttgagtttctatttatataaaatggataataaattgattttctacat 13531943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 17845552 - 17845396
Alignment:
Q  1 gagtgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgatt-ttttacatttatgacgagtttgggtatg---tgcgggtacg 96  Q
    ||||||||||||||||| || ||||||||||||||||||||| |||||| |||||||| |||||||||   |||| |||||||||||   |  ||||  |    
T  17845552 gagtgaaatgatttaggtttggagtttctatttatataaaaaggataataaattgatttttttacattcgagacgggtttgggtatgggttaagggtggg 17845453  T
Q  97 tacttatatctccattacttgtctcatatataccatgttttgaaatcggagaaaactcaa 156  Q
    ||||||||| ||||||||  ||||||||     | ||||||||||||| |||||||||||    
T  17845452 tacttatatgtccattaccggtctcata---ctcgtgttttgaaatcgaagaaaactcaa 17845396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 30696853 - 30696920
Alignment:
Q  1 gagtgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacattt 68  Q
    |||||| |||||||||||||||| |||||||||||||||||  | |||| ||||||||||||||||||    
T  30696853 gagtgacatgatttagggtttgaatttctatttatataaaatgggtaataaattgattttttacattt 30696920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 25210306 - 25210372
Alignment:
Q  1 gagtgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacatt 67  Q
    |||||||||||||||||||||||||||||||||||||||||  | |||  |||||||||| ||||||    
T  25210306 gagtgaaatgatttagggtttgagtttctatttatataaaatgggtaacaaattgattttctacatt 25210372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 13954674 - 13954733
Alignment:
Q  1 gagtgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgatttt 60  Q
    |||||||||||||||||||| |||||||||||||||||||| || |||| | ||||||||    
T  13954674 gagtgaaatgatttagggttcgagtttctatttatataaaagtggtaataagttgatttt 13954733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 14095881 - 14095940
Alignment:
Q  1 gagtgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgatttt 60  Q
    |||||||||||||||||||| |||||||||||||||||||| || |||| | ||||||||    
T  14095881 gagtgaaatgatttagggttcgagtttctatttatataaaagtggtaataagttgatttt 14095940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 40359276 - 40359340
Alignment:
Q  4 tgaaatgatttagggtttgagtttctatttatataaaa-atgataattaattgattttttacattt 68  Q
    |||||||||||||  ||||||||||||||||||||||| ||| |||| ||||||||||||||||||    
T  40359276 tgaaatgatttagactttgagtttctatttatataaaagatg-taataaattgattttttacattt 40359340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 11958949 - 11959029
Alignment:
Q  6 aaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacatttatgacgagtttgggtatg 86  Q
    ||||||| |||| |||||||||||  ||||||||||  | |||| |||||||||| |||||| |||| |||||||||||||    
T  11958949 aaatgatctaggttttgagtttctgcttatataaaagaggtaataaattgattttatacattcatgatgagtttgggtatg 11959029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 31600928 - 31600888
Alignment:
Q  1 gagtgaaatgatttagggtttgagtttctatttatataaaa 41  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  31600928 gagtgaaatgatttagagtttgagtttctatttatataaaa 31600888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 35248541 - 35248501
Alignment:
Q  1 gagtgaaatgatttagggtttgagtttctatttatataaaa 41  Q
    ||||||||||||||||||||| | |||||||||||||||||    
T  35248541 gagtgaaatgatttagggtttcattttctatttatataaaa 35248501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 29656895 - 29656828
Alignment:
Q  1 gagtgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacattt 68  Q
    |||| |||||||||||||||   |||| |||||||||||||  |||||| |||||||||| |||||||    
T  29656895 gagtcaaatgatttagggttatggtttttatttatataaaagggataataaattgattttatacattt 29656828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 34544468 - 34544405
Alignment:
Q  4 tgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacatt 67  Q
    |||||| ||||||||||||||||| |||||||||||||  | |||| ||| |||||| ||||||    
T  34544468 tgaaattatttagggtttgagtttttatttatataaaatgggtaataaatagattttctacatt 34544405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 34214815 - 34214732
Alignment:
Q  2 agtgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacatttatgacgagtttgggtatg 86  Q
    ||||||||||||||| ||| ||||||||||||||||||| | |  ||| |||||| ||| ||||| || |||| ||||| |||||    
T  34214815 agtgaaatgatttagagtt-gagtttctatttatataaacagggcaataaattgactttctacatctaggacgggtttgagtatg 34214732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 86
Target Start/End: Original strand, 39219191 - 39219272
Alignment:
Q  5 gaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacatttatgacgagtttgggtatg 86  Q
    |||||||||||||||||||||||||||||||||||||  | |||| |||| ||||| ||||||||  |||||||||||||||    
T  39219191 gaaatgatttagggtttgagtttctatttatataaaagaggtaataaattaattttctacatttagaacgagtttgggtatg 39219272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 43513189 - 43513123
Alignment:
Q  1 gagtgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacatt 67  Q
    ||||||||| ||||||||||||||||||||||||||||||||   | || |||||||||||||||||    
T  43513189 gagtgaaattatttagggtttgagtttctatttatataaaaagagttataaattgattttttacatt 43513123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 48125841 - 48125758
Alignment:
Q  3 gtgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacatttatgacgagtttgggtatg 86  Q
    ||||||| |||||| ||||||||||||||||||||||||  | || | |||||||||| ||||||   ||||||||||||||||    
T  48125841 gtgaaataatttagagtttgagtttctatttatataaaagcggtagtaaattgattttctacattcgcgacgagtttgggtatg 48125758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 16903444 - 16903505
Alignment:
Q  1 gagtgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgatttttt 62  Q
    ||||||||| ||||||||||||||||| |||||||||||||| |  ||| ||||||||||||    
T  16903444 gagtgaaataatttagggtttgagtttatatttatataaaaagggcaataaattgatttttt 16903505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 6 - 86
Target Start/End: Complemental strand, 33293675 - 33293595
Alignment:
Q  6 aaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacatttatgacgagtttgggtatg 86  Q
    ||||||||||||||||||||||||||| ||||||||  | || | |||||||||| ||||||    |||||||||||||||    
T  33293675 aaatgatttagggtttgagtttctattgatataaaatgggtactaaattgattttctacattcggaacgagtttgggtatg 33293595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 13692575 - 13692641
Alignment:
Q  3 gtgaaatgatttagggtttgagtttctatttatataaaaatgataat-taattgattttttacattt 68  Q
    |||||||||||||||||||  ||||||||||||||||||  ||||||  |||||||||| |||||||    
T  13692575 gtgaaatgatttagggttttggtttctatttatataaaagggataataaaattgattttctacattt 13692641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 47645019 - 47644953
Alignment:
Q  1 gagtgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacatt 67  Q
    ||||||||||||||||| | |||||||||||||||||||||  |||||| ||||  | |||||||||    
T  47645019 gagtgaaatgatttaggatctgagtttctatttatataaaagggataataaattattattttacatt 47644953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 48576277 - 48576219
Alignment:
Q  2 agtgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgatttt 60  Q
    ||||||||||||||||||||||| || |||||||| ||||| ||| || ||||||||||    
T  48576277 agtgaaatgatttagggtttgagattttatttatacaaaaaggattataaattgatttt 48576219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 2581505 - 2581542
Alignment:
Q  4 tgaaatgatttagggtttgagtttctatttatataaaa 41  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  2581505 tgaaatgatttagagtttgagtttctatttatataaaa 2581542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 8880377 - 8880462
Alignment:
Q  1 gagtgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacatttatgacgagtttgggtatg 86  Q
    |||||||||||||||  ||||||||||||||||||| ||||  | |||| |||| ||||||  |||||  |||| |||||||||||    
T  8880377 gagtgaaatgatttaaagtttgagtttctatttataaaaaaggggtaataaatttatttttagcatttgggacgggtttgggtatg 8880462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 23719533 - 23719590
Alignment:
Q  2 agtgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattt 59  Q
    ||||||||||||||  ||||||||||||||||||||||||| | || | |||||||||    
T  23719533 agtgaaatgatttatagtttgagtttctatttatataaaaagggtagtaaattgattt 23719590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 36421698 - 36421779
Alignment:
Q  4 tgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacatttatgacgagtttgggtat 85  Q
    ||||||||||||| ||| |||||| ||||||||||| |  |||||| |||||||||| || |||   |||||||||||||||    
T  36421698 tgaaatgatttagagttcgagtttttatttatataagagggataataaattgattttctatattcgagacgagtttgggtat 36421779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 42729104 - 42729019
Alignment:
Q  1 gagtgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacatttatgacgagtttgggtatg 86  Q
    |||||||||||||||| || | |||||||||||||||||||  ||| || |||| ||||| |||||| |  ||| |||||||||||    
T  42729104 gagtgaaatgatttagtgtataagtttctatttatataaaagggatgataaatttattttctacattcagaacgtgtttgggtatg 42729019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 5290436 - 5290372
Alignment:
Q  23 agtttctatttatataaaaatgataattaattgattt-tttacatttatgacgagtttgggtatg 86  Q
    |||||||||||||||||||  |||||| | ||||||| |||||||| |||||||||||| |||||    
T  5290436 agtttctatttatataaaagagataataatttgatttatttacattcatgacgagtttgtgtatg 5290372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 5293553 - 5293490
Alignment:
Q  18 gtttgagtttctatttatataaaaatgataattaattgattttttacatttatgacgagtttgg 81  Q
    |||||||||||||||||||||||| ||||||| |||||| |||  |||||   |||||||||||    
T  5293553 gtttgagtttctatttatataaaagtgataataaattgactttcaacattcgggacgagtttgg 5293490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 5703332 - 5703271
Alignment:
Q  2 agtgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttac 64  Q
    |||||||||||||||| ||||||||| || ||||||||||   ||||| ||||||||||||||    
T  5703332 agtgaaatgatttaggatttgagtttata-ttatataaaagatataataaattgattttttac 5703271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 31345459 - 31345525
Alignment:
Q  1 gagtgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacatt 67  Q
    |||||||||||| ||| ||||||||||||||||||||||||||| || | |||||||||||||||||    
T  31345459 gagtgaaatgatatagagtttgagtttctatttatataaaaatggtagtaaattgattttttacatt 31345525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 4101475 - 4101560
Alignment:
Q  1 gagtgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacatttatgacgagtttgggtatg 86  Q
    ||||||||||||| ||||||||||||| |||||| |||||| || |||| ||||||||||  ||||| | |||| ||| |||||||    
T  4101475 gagtgaaatgattaagggtttgagtttttatttaaataaaattggtaataaattgattttcaacattcaggacgggttagggtatg 4101560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 11472872 - 11472813
Alignment:
Q  1 gagtgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgatttt 60  Q
    |||||||||||||||||||||  ||||||||||||||||||   ||||| ||||||||||    
T  11472872 gagtgaaatgatttagggttttggtttctatttatataaaaggtataataaattgatttt 11472813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 6557886 - 6557825
Alignment:
Q  1 gagtgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgatttttt 62  Q
    |||||||||||||||| ||||||| |||||||| ||| |||| |||||| || |||||||||    
T  6557886 gagtgaaatgatttagagtttgagattctatttctatgaaaaggataataaactgatttttt 6557825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 43550576 - 43550539
Alignment:
Q  1 gagtgaaatgatttagggtttgagtttctatttatata 38  Q
    |||||||||||||||||||||| |||||||||||||||    
T  43550576 gagtgaaatgatttagggtttgggtttctatttatata 43550539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 29292636 - 29292720
Alignment:
Q  2 agtgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacatttatgacgagtttgggtatg 86  Q
    |||||||| ||||||||||||  ||||| |||||||||||  | || | |||||||||| ||||||   ||||||||| ||||||    
T  29292636 agtgaaataatttagggtttggatttctctttatataaaaggggtagtaaattgattttctacattcgagacgagtttaggtatg 29292720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 82
Target Start/End: Original strand, 37217942 - 37218017
Alignment:
Q  6 aaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacatttatgacgagtttggg 82  Q
    ||||||||||||  ||||||||||||||||| ||||  ||||| ||||||||||| || ||| | |||| |||||||    
T  37217942 aaatgatttaggcattgagtttctatttatacaaaagagataa-taattgattttctatattcaggacgggtttggg 37218017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1322 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold1322
Description:

Target: scaffold1322; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 1039 - 1120
Alignment:
Q  1 gagtgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacatttatgacgagtttggg 82  Q
    ||||||||||||||| | |||||||||||||||||||||||  | |||| |||| ||||| |||||| |||||| |||||||    
T  1039 gagtgaaatgatttaagatttgagtttctatttatataaaatgggtaataaattaattttctacattcatgacgggtttggg 1120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 37032258 - 37032192
Alignment:
Q  1 gagtgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacatt 67  Q
    ||||||||||||||||||||||||||| |||||||||||||  | |||| |||| ||||| ||||||    
T  37032258 gagtgaaatgatttagggtttgagtttttatttatataaaatgggtaataaattaattttctacatt 37032192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 86
Target Start/End: Original strand, 40890278 - 40890359
Alignment:
Q  4 tgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacatttatgacgagtttgggtatg 86  Q
    ||||||||| ||| |||||||||||||||||||| | || |||||| |||||||||| |||||||  || ||| |||||||||    
T  40890278 tgaaatgatctagagtttgagtttctatttatat-agaaggataataaattgattttctacatttgagatgagcttgggtatg 40890359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 27937667 - 27937707
Alignment:
Q  1 gagtgaaatgatttagggtttgagtttctatttatataaaa 41  Q
    |||||||||||||||||||||  ||||||||||||||||||    
T  27937667 gagtgaaatgatttagggtttaggtttctatttatataaaa 27937707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 30904975 - 30904935
Alignment:
Q  1 gagtgaaatgatttagggtttgagtttctatttatataaaa 41  Q
    ||||||||||||| |||||||| ||||||||||||||||||    
T  30904975 gagtgaaatgattaagggtttgggtttctatttatataaaa 30904935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 4553134 - 4553184
Alignment:
Q  16 gggtttgagtttctatttatataaaaatgataattaattgattttttacatt 67  Q
    |||||||||||| ||||||||||||||  ||||| |||||||||||||||||    
T  4553134 gggtttgagtttttatttatataaaaa-aataataaattgattttttacatt 4553184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 26207213 - 26207252
Alignment:
Q  3 gtgaaatgatttagggtttgagtttctatttatataaaaa 42  Q
    |||||||||||||||||||| ||||| |||||||||||||    
T  26207213 gtgaaatgatttagggtttgggtttcaatttatataaaaa 26207252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 772953 - 772913
Alignment:
Q  1 gagtgaaatgatttagggtttgagtttctatttatataaaa 41  Q
    ||||||||||||| | |||||||||||||||||||| ||||    
T  772953 gagtgaaatgattcaaggtttgagtttctatttatacaaaa 772913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 14216408 - 14216448
Alignment:
Q  1 gagtgaaatgatttagggtttgagtttctatttatataaaa 41  Q
    |||||||||  |||||||||||||||||| |||||||||||    
T  14216408 gagtgaaattgtttagggtttgagtttctttttatataaaa 14216448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 14321795 - 14321876
Alignment:
Q  1 gagtgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacatttatgacgagtttggg 82  Q
    ||||||||||||||| | |||||||||||||||||||||||  | |||| |||| ||||| |||||| |||||  |||||||    
T  14321795 gagtgaaatgatttaagatttgagtttctatttatataaaataggtaataaattaattttctacattcatgacaggtttggg 14321876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 34179164 - 34179128
Alignment:
Q  6 aaatgatttagggtttgagtttctatttatataaaaa 42  Q
    |||||||||||||||||||||||||||||||||||||    
T  34179164 aaatgatttagggtttgagtttctatttatataaaaa 34179128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 372939 - 372857
Alignment:
Q  3 gtgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacatttatgacgagtttgggtatg 86  Q
    ||||||||||||||| |||   |||||||||||||||||  |||||| | |||| |||||||||| |||| |||||||||||||    
T  372939 gtgaaatgatttaggatttagatttctatttatataaaag-gataataagttgactttttacattcatgatgagtttgggtatg 372857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 9402517 - 9402556
Alignment:
Q  1 gagtgaaatgatttagggtttgagtttctatttatataaa 40  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  9402517 gagtgaaatgatttagggtttgggtttctatttatataaa 9402556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 32054430 - 32054392
Alignment:
Q  2 agtgaaatgatttagggtttgagtttctatttatataaa 40  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  32054430 agtgaaatgatttagggtttgagcttctatttatataaa 32054392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 34346174 - 34346136
Alignment:
Q  1 gagtgaaatgatttagggtttgagtttctatttatataa 39  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  34346174 gagtgaaatgatttagggtttgggtttctatttatataa 34346136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 10925602 - 10925537
Alignment:
Q  2 agtgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacatt 67  Q
    |||||||||||||||||||| || ||||||||||||||||   ||||| ||||  |||||||||||    
T  10925602 agtgaaatgatttagggtttcagattctatttatataaaaggaataataaattatttttttacatt 10925537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 20348991 - 20349059
Alignment:
Q  1 gagtgaaatgatttagggtttgagtttcta-tttatataaaaatgataattaattgattttttacattt 68  Q
    ||||||| ||||||||||||||||||| || ||||||||||||   |||| |||| |||||||||||||    
T  20348991 gagtgaagtgatttagggtttgagtttatattttatataaaaagtgtaataaattaattttttacattt 20349059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 86
Target Start/End: Original strand, 13769003 - 13769085
Alignment:
Q  4 tgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacatttatgacgagtttgggtatg 86  Q
    |||||| ||||| |||||||||||| ||||||||||||    |||| |||||||||| |||||| | |||| |||||| ||||    
T  13769003 tgaaataatttatggtttgagtttcaatttatataaaaggagtaataaattgattttctacattcaggacgggtttggatatg 13769085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 8320954 - 8320922
Alignment:
Q  2 agtgaaatgatttagggtttgagtttctattta 34  Q
    |||||||||||||||||||| ||||||||||||    
T  8320954 agtgaaatgatttagggtttaagtttctattta 8320922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 29341180 - 29341216
Alignment:
Q  2 agtgaaatgatttagggtttgagtttctatttatata 38  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  29341180 agtgaaatgatatagggtttgggtttctatttatata 29341216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 35584050 - 35584110
Alignment:
Q  6 aaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacatt 67  Q
    |||||||||||||||||||||||||||||||| |||| | |||| |||||||||| ||||||    
T  35584050 aaatgatttagggtttgagtttctatttatat-aaaagggtaataaattgattttgtacatt 35584110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 12709436 - 12709504
Alignment:
Q  1 gagtgaaatgatttagggtttgagtttctatttatataaaaatgata-attaattgattttttacattt 68  Q
    ||||||||||||||||||||||| ||||||||||| ||||||  | | || ||||||||||||||||||    
T  12709436 gagtgaaatgatttagggtttgaatttctatttatgtaaaaagaaaagataaattgattttttacattt 12709504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 12770686 - 12770754
Alignment:
Q  1 gagtgaaatgatttagggtttgagtttctatttatataaaaatgata-attaattgattttttacattt 68  Q
    ||||||||||||||||||||||| ||||||||||| ||||||  | | || ||||||||||||||||||    
T  12770686 gagtgaaatgatttagggtttgaatttctatttatgtaaaaagaaaagataaattgattttttacattt 12770754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 16311453 - 16311395
Alignment:
Q  1 gagtgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgatttt 60  Q
    |||| ||||||||||||||||| ||||||||||||||||||  |||||| ||||||||||    
T  16311453 gagtaaaatgatttagggtttg-gtttctatttatataaaagggataataaattgatttt 16311395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 27900559 - 27900496
Alignment:
Q  4 tgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacatt 67  Q
    |||||||||||||||||| |||||||||||||||||||  |  ||| |||||||||| ||||||    
T  27900559 tgaaatgatttagggtttcagtttctatttatataaaagaggaaataaattgattttatacatt 27900496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 86
Target Start/End: Original strand, 29664902 - 29664984
Alignment:
Q  4 tgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacatttatgacgagtttgggtatg 86  Q
    ||||||||||||| ||||||||||||||||| ||||||  | || | |||||||||| ||||||   |||| |||||||||||    
T  29664902 tgaaatgatttagagtttgagtttctatttaaataaaaggggtagtaaattgattttgtacattcgggacgggtttgggtatg 29664984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 39887259 - 39887183
Alignment:
Q  4 tgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacatttatgacgagtttg 80  Q
    |||||||||||||  || ||||||||||||||||||||  || ||| |||||||||| ||| |||| |||| |||||    
T  39887259 tgaaatgatttagatttcgagtttctatttatataaaagagagaataaattgattttctacgtttaggacgggtttg 39887183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 60
Target Start/End: Original strand, 38972855 - 38972909
Alignment:
Q  6 aaatgatttagggtttgagtttctatttatataaaaatgataattaattgatttt 60  Q
    |||||||||||||||| |||||| ||||||||||||  | |||| ||||||||||    
T  38972855 aaatgatttagggtttcagtttcgatttatataaaagggttaataaattgatttt 38972909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 457532 - 457467
Alignment:
Q  2 agtgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacatt 67  Q
    |||||||||||||||| |||  ||||||||||||||||||    |||| |||||||||| ||||||    
T  457532 agtgaaatgatttaggattttggtttctatttatataaaaggtgtaataaattgattttatacatt 457467  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 12457445 - 12457530
Alignment:
Q  1 gagtgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacatttatgacgagtttgggtatg 86  Q
    ||||||||||||||||  |||  |||||||||||||| |||  | |||| |||||||||| ||||||   |||| |||||||||||    
T  12457445 gagtgaaatgatttagactttaggtttctatttatattaaaggggtaataaattgattttctacattcgggacgggtttgggtatg 12457530  T

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Target: scaffold0264 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 17615 - 17575
Alignment:
Q  1 gagtgaaatgatttagggtttgagtttctatttatataaaa 41  Q
    ||||||||||||||| |||||| ||||||||||||||||||    
T  17615 gagtgaaatgatttatggtttgcgtttctatttatataaaa 17575  T

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Target: scaffold0157 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 86
Target Start/End: Original strand, 14789 - 14871
Alignment:
Q  4 tgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacatttatgacgagtttgggtatg 86  Q
    ||||||||||||  |||| |||||||||||||||||||  |  ||| ||||||| |||||| || | |||| |||||||||||    
T  14789 tgaaatgatttaatgtttaagtttctatttatataaaaggggaaataaattgatgttttaccttcaggacgggtttgggtatg 14871  T

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