View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_high_115 (Length: 324)
Name: NF11745_high_115
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_high_115 |
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| [»] scaffold1051 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 11 - 311
Target Start/End: Complemental strand, 21427536 - 21427238
Alignment:
| Q |
11 |
cataggctaaattaaacatcacatgcaataacatggcatccgtttcgcataatagtacccatcgtcaactgattttcacagcttaaaaattgactccata |
110 |
Q |
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| T |
21427536 |
cataggctaaattaaacatcacatgcaataacatggcatccgtttcgcataatagtacccatcgtcaactgattttcacagcttaaaaattgactccata |
21427437 |
T |
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| Q |
111 |
tcattatgcaatgcaacannnnnnnnnngaatcatgtcttcaaccaaaaaatcccaatagaagaaaggaaggaaacacattattacggagtgggaactat |
210 |
Q |
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| T |
21427436 |
tcattatgcaatgcaacatttttttt--gaatcatgtcttccaccaaaaaatcccaatagaagaaaggaaggaaacacattattacggagtgggaacgat |
21427339 |
T |
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| Q |
211 |
cgaagaaaacgaattgcttaatattaacacaaacaatagcatattaaatactgtaaaagataaaacataaatgatgaaataagttgaagatgatgttcat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
21427338 |
cgaagaaaacgaattgcttaatattaacacaaacaatagcatattaaatactgtaaaagataaaacataaatgatggaataagttgaagatgatgttcat |
21427239 |
T |
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Target: scaffold1051 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold1051
Description:
Target: scaffold1051; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 242 - 303
Target Start/End: Original strand, 1824 - 1885
Alignment:
| Q |
242 |
aacaatagcatattaaatactgtaaaagataaaacataaatgatgaaataagttgaagatga |
303 |
Q |
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| T |
1824 |
aacaataacatataaaataatgtaaaagataaaacataaatgatgaaataagttaaagatga |
1885 |
T |
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