View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11745_high_121 (Length: 311)

Name: NF11745_high_121
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11745_high_121
NF11745_high_121
[»] chr5 (1 HSPs)
chr5 (1-297)||(31192430-31192725)
[»] scaffold0340 (1 HSPs)
scaffold0340 (69-159)||(16675-16764)
[»] chr4 (3 HSPs)
chr4 (100-240)||(20314372-20314510)
chr4 (73-123)||(17380764-17380814)
chr4 (73-145)||(19084149-19084220)
[»] chr8 (1 HSPs)
chr8 (68-121)||(12656527-12656580)
[»] chr2 (2 HSPs)
chr2 (73-122)||(23738108-23738157)
chr2 (73-121)||(9789136-9789184)
[»] chr6 (1 HSPs)
chr6 (73-121)||(8323174-8323222)


Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 31192725 - 31192430
Alignment:
Q  1 catgaaaattgacaaagaaaagcatctcattaagaattgagaatacaataaatgaagattcgacggtatctaaagacattacagagtggagaaattatat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  31192725 catgaaaattgacaaagaaaagcatctcattaagaattgagaatacaatgaatgaagattcgagggtatctaaagacattacagagtggagaaattatat 31192626  T
Q  101 tccaagtcccatgacaagtttcaaatgaagaaagcactctaaaagatcaagaaaaaggcnnnnnnngattttggaagaaggtgccgtgcaacccaagcat 200  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||| |        ||||||||||||||||||||||||||||||||||    
T  31192625 tccaagtcccatgataagtttc-aatgaagaaagcactctaaaagaccaagaaaaaaggcaaaaaagattttggaagaaggtgccgtgcaacccaagcat 31192527  T
Q  201 gatcttgtgcaccctggatgtgcaaaacaatgcacaaaatgtactgtttttgacttgatgtgtggcgctcatgatgctacgcgcaacgtgtgttctt 297  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||    
T  31192526 gatcttgtccaccctggatgtgcaaaacagtgcacaaaatgtactgtttttgatttgatgtgtggcgctcatgatgccacgcgcaatgtgtgttctt 31192430  T

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Target: scaffold0340 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 69 - 159
Target Start/End: Complemental strand, 16764 - 16675
Alignment:
Q  69 tctaaagacattacagagtggagaaattatattccaagtcccatgacaagtttcaaatgaagaaagcactctaaaagatcaagaaaaaggc 159  Q
    ||||||||||||||| || | |||||||||||||  ||||||| |||||||||| |||||||||| ||||| ||||||| |||||||||||    
T  16764 tctaaagacattacaaagagaagaaattatattctgagtcccaagacaagtttc-aatgaagaaaacactcaaaaagatgaagaaaaaggc 16675  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 100 - 240
Target Start/End: Original strand, 20314372 - 20314510
Alignment:
Q  100 ttccaagtcccatgacaagtttcaaatgaagaaagcactctaaaagatcaagaaaaaggcnnnnnnngattttggaagaaggtgccgtgcaacccaagca 199  Q
    |||||||||||| ||||| ||||||| |||||||| |||| |||||| ||||||||| ||       | | ||||||||||||||| ||||  || ||||    
T  20314372 ttccaagtcccaagacaaatttcaaa-gaagaaagtactcaaaaagaccaagaaaaaagcaaaaaatg-tgttggaagaaggtgccatgcactccgagca 20314469  T
Q  200 tgatcttgtgcaccctggatgtgcaaaacaatgcacaaaat 240  Q
    |||   ||||| |||||| ||||||||||||||||||||||    
T  20314470 tgactctgtgcgccctggttgtgcaaaacaatgcacaaaat 20314510  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 123
Target Start/End: Complemental strand, 17380814 - 17380764
Alignment:
Q  73 aagacattacagagtggagaaattatattccaagtcccatgacaagtttca 123  Q
    ||||||||||| || ||||||||| |||| ||||||||| |||||||||||    
T  17380814 aagacattacaaagaggagaaattctatttcaagtcccaagacaagtttca 17380764  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 145
Target Start/End: Original strand, 19084149 - 19084220
Alignment:
Q  73 aagacattacagagtggagaaattatattccaagtcccatgacaagtttcaaatgaagaaagcactctaaaag 145  Q
    ||||||||||| ||||||||| |  |||||||||| ||| |||||||||| || |||||||||| || |||||    
T  19084149 aagacattacaaagtggagaactactattccaagtgccaagacaagtttc-aaggaagaaagcattcaaaaag 19084220  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 12656527 - 12656580
Alignment:
Q  68 atctaaagacattacagagtggagaaattatattccaagtcccatgacaagttt 121  Q
    |||| ||||||||||| | |||||||||||||||||||| | || |||||||||    
T  12656527 atctgaagacattacaaaatggagaaattatattccaagccacaagacaagttt 12656580  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 23738157 - 23738108
Alignment:
Q  73 aagacattacagagtggagaaattatattccaagtcccatgacaagtttc 122  Q
    |||| |||||| |||||||||||| |||||| ||||||| ||||||||||    
T  23738157 aagatattacaaagtggagaaattctattccgagtcccaagacaagtttc 23738108  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 121
Target Start/End: Original strand, 9789136 - 9789184
Alignment:
Q  73 aagacattacagagtggagaaattatattccaagtcccatgacaagttt 121  Q
    |||||||||||   |||||||||| |||||||||||||| |||||||||    
T  9789136 aagacattacaagttggagaaattctattccaagtcccaagacaagttt 9789184  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 121
Target Start/End: Original strand, 8323174 - 8323222
Alignment:
Q  73 aagacattacagagtggagaaattatattccaagtcccatgacaagttt 121  Q
    ||||||||| | |||||||||||| |||| ||||||||| |||||||||    
T  8323174 aagacattagaaagtggagaaattctatttcaagtcccaagacaagttt 8323222  T

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