View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11745_high_123 (Length: 308)
Name: NF11745_high_123
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_high_123 |
 | |
|
| [»] scaffold0019 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 14556874 - 14556585
Alignment:
| Q |
1 |
agataatgcgacgatgaatatctttggtcggaacacgatcccataggagacgccagacaaacaaggacaccttcaacggaatatgccgctgccatatagc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
14556874 |
agataatgcgacgatgaatatctttggtcggaacacgatccaataggagacgccagacaaacaaggacaccttcaacggaatatgccgctgtcatatagc |
14556775 |
T |
|
| Q |
101 |
attcggcacaactgcatcgagagaagggacgtcactagtggggagagtttaagcgcctctcacagtataccttgcagaaggatctggtgaccaaactcat |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
14556774 |
atccggcacaactgcatcgagagaagggacgtcactagtggggagagtgtaagcgcctctcacagtataccttgcagaaggatccggtgaccaaacccat |
14556675 |
T |
|
| Q |
201 |
atctctgaacaatgaacctgcaaagttgcatcacaaagtaacaactgacactctactaaaagttctttcttccacgcccgcagactcctc |
290 |
Q |
| |
|
| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| || |||| |||||||||||||| |
|
|
| T |
14556674 |
ctgtctgaacaatgaacctgcaaagtcacatcacaaagtaacaactgacactctattaaaagttcttcctcccacacccgcagactcctc |
14556585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 204 - 290
Target Start/End: Complemental strand, 49598 - 49512
Alignment:
| Q |
204 |
tctgaacaatgaacctgcaaagttgcatcacaaagtaacaactgacactctactaaaagttctttcttccacgcccgcagactcctc |
290 |
Q |
| |
|
|||||||| |||||||||||||| |||||| || ||||||| |||||||||||||||||||| || ||| |||| || ||||||| |
|
|
| T |
49598 |
tctgaacattgaacctgcaaagtcacatcacgaaacaacaactaacactctactaaaagttcttcctcccatgcccccaaactcctc |
49512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 2281853 - 2281937
Alignment:
| Q |
19 |
tatctttggtcggaacacgatcccataggagacgccagacaaacaaggacaccttcaacggaatatgccgctgccatatagcatt |
103 |
Q |
| |
|
||||||| || ||||| | ||||| ||||||||||| || |||||||||||||||||||||||| ||| |||| ||||||||| |
|
|
| T |
2281853 |
tatctttagtgggaactctatcccgcaggagacgccatacgaacaaggacaccttcaacggaatacgcctttgccgtatagcatt |
2281937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 267
Target Start/End: Original strand, 38391342 - 38391476
Alignment:
| Q |
133 |
cactagtggggagagtttaagcgcctctcacagtataccttgcagaaggatctggtgaccaaactcatatctctgaacaatgaacctgcaaagttgcatc |
232 |
Q |
| |
|
||||| || ||||||| || || |||||| || ||||| ||| |||||| |||||||||||| ||| | || ||||| | ||||||||||| |||| |
|
|
| T |
38391342 |
cactaatgaggagagtgtatgcacctctcgtagcataccccgcaaaaggatttggtgaccaaacccatctgtcagaacactaaacctgcaaagacacatc |
38391441 |
T |
|
| Q |
233 |
acaaagtaacaactgacactctactaaaagttctt |
267 |
Q |
| |
|
| | ||||| |||||||||| |||||||||||||| |
|
|
| T |
38391442 |
agagagtaataactgacactatactaaaagttctt |
38391476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 38391171 - 38391239
Alignment:
| Q |
19 |
tatctttggtcggaacacgatcccataggagacgccagacaaacaaggacaccttcaacggaatatgcc |
87 |
Q |
| |
|
||||||| |||||||||||||| | || |||||||| | |||||||| |||||||||||||| |||| |
|
|
| T |
38391171 |
tatcttttgtcggaacacgatcacgaagaagacgccacatgaacaaggataccttcaacggaatgtgcc |
38391239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 10462604 - 10462550
Alignment:
| Q |
19 |
tatctttggtcggaacacgatcccataggagacgccagacaaacaaggacacctt |
73 |
Q |
| |
|
|||||||||| |||||||| |||| | |||||||||||| |||||||||||||| |
|
|
| T |
10462604 |
tatctttggtgggaacacggtcccgcaagagacgccagacgaacaaggacacctt |
10462550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University