View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_high_128 (Length: 299)
Name: NF11745_high_128
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_high_128 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 22 - 299
Target Start/End: Complemental strand, 28927865 - 28927588
Alignment:
| Q |
22 |
cctttaaaattttcttatttactgatagatagtttattaggttttcaatgaaattaatttttaatctaatattttccccaaatgaacagtgtgttcatac |
121 |
Q |
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| T |
28927865 |
cctttaaaattttcttatttactgatagatagtttattagcttttcaatgaaattaatttttaatctaatattttccccaaatgaacagtgtgttcatac |
28927766 |
T |
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| Q |
122 |
tccaaagtcattacatgaaattgattgagtaacatttatttattgttagtagccctgacacctgtggtggaaggagtgttcgacattgacacatgtgtgt |
221 |
Q |
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| T |
28927765 |
tccaaagtcattacatgaaattgattgagtaacatttatttattgttagtagccctgacacctgtgatggaaggagcattcgacattgacacatgtgtgt |
28927666 |
T |
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| Q |
222 |
gtgatcatgttcatttaattgactttttcaaacttttacctttgtttgtatcaatgtcgtcttcagtgtccatctctg |
299 |
Q |
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| T |
28927665 |
gagatcatgttcatttaattgactttttcaaacttttacctttgtttgtatcaatgtcgtcttcggtgtccatgtctg |
28927588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 143 - 200
Target Start/End: Complemental strand, 28904830 - 28904773
Alignment:
| Q |
143 |
tgattgagtaacatttatttattgttagtagccctgacacctgtggtggaaggagtgt |
200 |
Q |
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| T |
28904830 |
tgattgagtaacatttatttattgttagtagcactgacacttgtgatggaaggcgtgt |
28904773 |
T |
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