View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_high_13 (Length: 632)
Name: NF11745_high_13
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 552; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 19 - 622
Target Start/End: Complemental strand, 30978322 - 30977717
Alignment:
| Q |
19 |
aacaccttctctatctcttcctcttttaaatcctcaaagaagtgaaatcatgatgagtaagagcatcaagagctatgaagaggtgaagaaacacaatgtt |
118 |
Q |
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| T |
30978322 |
aacaccttctctatctcttcctcttttaaatcctcaaagaagtgaaatcatgatgagtaagagcatcaagagctatgaagaggtgaagaaacacaatgtt |
30978223 |
T |
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| Q |
119 |
ttgatgaataatgagcaaaacattacattggagttaggaatagggttgtttaaacaccaagaggaaaagttagatttggagcttcatctctagctagtta |
218 |
Q |
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| T |
30978222 |
ttgatgaataatgagcaaaacattacattggagttaggaatagggttgtttaaacaccaagaggaaaagttagatttggagcttcatctctagctagtta |
30978123 |
T |
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| Q |
219 |
tgtaacaaacaaggtgcaatttatcaaacaaatttatatatatagttcagtgactagctagtactgcaaatgatgtgcaacttcagatatatttgtttta |
318 |
Q |
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| T |
30978122 |
tgtaacaatcaaggtgcaatttatcaaacaaatttatatatatagttcagtgactagctagtactgcaaatgatgtgcaacttcagatatatttgtttta |
30978023 |
T |
|
| Q |
319 |
actttcttgcattttaattaggactttttgtattattatgcatttcaaggaccttattgtttagtatttcttttgtaatttgttgtttaagttggatgag |
418 |
Q |
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| T |
30978022 |
actttcttgcattttaattaggactttttgtattattatgcatttcaaggaccttattgtttagtatttcttttgtaatttgttgtttaagttggatgag |
30977923 |
T |
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| Q |
419 |
ttcttttgtc--nnnnnnnnngttggatgaattctaaatatatatcttgtaatgatcaagtgatttagaaatttttcaaaccataattcagaaaatattg |
516 |
Q |
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| T |
30977922 |
ttcttttgtcaaaaaaaaaaagttggatgaattctaaatatatatcttgtaatgatcaagtgatttagaaatttttcaaaccatgattcagaaaatattg |
30977823 |
T |
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| Q |
517 |
taagtgatgaaatcttcaaagatatgcatcatttctttttcataatgttatatatatgtcttatcaattagcaatcatattttgattttggtctttgttc |
616 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30977822 |
taagtgatgaaatcttcaaagatatgcattatttctttttcataatgttatatatatgtcttatcaattagcaatcatattttgattttggtctttgttc |
30977723 |
T |
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| Q |
617 |
atctca |
622 |
Q |
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| T |
30977722 |
ttctca |
30977717 |
T |
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