View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_high_131 (Length: 295)
Name: NF11745_high_131
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_high_131 |
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| [»] scaffold0591 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 19 - 286
Target Start/End: Complemental strand, 28695618 - 28695351
Alignment:
| Q |
19 |
gctatccctaatgatgggaaggtgattgttttagaggcacaaattcccactgtgcatgagaatgattatgcttcgaagtctacctctcaattagatgttc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28695618 |
gctatccctaatgatgggaaggtgattgttttagaggcacaaattcccactgtgcatgagaatgattatgcttcgaagtctacctctcaattagatgttc |
28695519 |
T |
|
| Q |
119 |
tgatgatgactcaaaccctaggaggaaaagagagaactaagcaagaatttcttgatttggcaactagagctggatttagaggcatcaattatgattgttg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
28695518 |
tgatgatgactcaaaccctaggaggaaaagagagaactaagcaagaatttcttgatttggcaactagagctggatttagaggcatcaattatgaatgttg |
28695419 |
T |
|
| Q |
219 |
tgttcgtaacaaatgggttatggagatctttaaataaagagcacatgctaatgctattttctttctct |
286 |
Q |
| |
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||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||| |
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| T |
28695418 |
tgttcgtaacaaatgggttatggagttctttaagtaaagagcacatgctagtgctattttctttctct |
28695351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 19 - 274
Target Start/End: Complemental strand, 28623964 - 28623705
Alignment:
| Q |
19 |
gctatccctaatgatgggaaggtgattgttttagaggcacaaattcccactgtgcatgagaatgattatgcttcgaagtctacctctcaattagatgttc |
118 |
Q |
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||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||| |||||||| ||||||||| ||||||| | |||||||||||| |
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| T |
28623964 |
gctatccctaatgatggaaaggtgattgttttagaggcacatattcccattgtgcctgagaatggttatgcttcaaagtctattgcccaattagatgtta |
28623865 |
T |
|
| Q |
119 |
tgatgatgactcaaaccctaggaggaaaagagagaac----taagcaagaatttcttgatttggcaactagagctggatttagaggcatcaattatgatt |
214 |
Q |
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|||||||||||||| || | |||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||| | ||||| | |
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| T |
28623864 |
tgatgatgactcaatgcccaagaggaaaagagagaactaattaagcaagaattcattgatttggcaactagagttggatttagaggcataagatatgaat |
28623765 |
T |
|
| Q |
215 |
gttgtgttcgtaacaaatgggttatggagatctttaaataaagagcacatgctaatgcta |
274 |
Q |
| |
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|||||||||||||| ||||||||||||| ||||||| ||||||||| ||| ||||||| |
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| T |
28623764 |
gttgtgttcgtaacttatgggttatggagttctttaagtaaagagcatgtgcaaatgcta |
28623705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 19 - 274
Target Start/End: Complemental strand, 28628301 - 28628046
Alignment:
| Q |
19 |
gctatccctaatgatgggaaggtgattgttttagaggcacaaattcccactgtgcatgagaatgattatgcttcgaagtctacctctcaattagatgttc |
118 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||| ||||||| ||||||||| ||||||||||||||||| ||||||| |
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| T |
28628301 |
gctatccctaatgatggaaaggtgattgttttagaggcacatattcccattgtgcctgagaatatttatgcttcaaagtctacctctcaattggatgttc |
28628202 |
T |
|
| Q |
119 |
tgatgatgactcaaaccctaggaggaaaagagagaactaagcaagaatttcttgatttggcaactagagctggatttagaggcatcaattatgattgttg |
218 |
Q |
| |
|
||||||||||||||| | |||||||||||| |||||||| |||| || |||||||||||||||||| ||||||||||||||| | | ||| || || |
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| T |
28628201 |
tgatgatgactcaaaatccaggaggaaaagaacgaactaagaaagagttcattgatttggcaactagagttggatttagaggcataagatgtgaatgctg |
28628102 |
T |
|
| Q |
219 |
tgttcgtaacaaatgggttatggagatctttaaataaagagcacatgctaatgcta |
274 |
Q |
| |
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|||||||||| |||||||||||| ||||||| | ||||||| ||| ||||||| |
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|
| T |
28628101 |
tgttcgtaacttttgggttatggagttctttaagtgaagagcatgtgcaaatgcta |
28628046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 19 - 261
Target Start/End: Complemental strand, 28723560 - 28723318
Alignment:
| Q |
19 |
gctatccctaatgatgggaaggtgattgttttagaggcacaaattcccactgtgcatgagaatgattatgcttcgaagtctacctctcaattagatgttc |
118 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| |||||| ||||| | | | | ||| |||||||||||||| | ||||||||| ||||||||||||| |
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| T |
28723560 |
gctattcctaatgatggaaaggtgattgttttggaggcatttattcctattatacctgataatgattatgcttcaaggtctacctcccaattagatgttc |
28723461 |
T |
|
| Q |
119 |
tgatgatgactcaaaccctaggaggaaaagagagaactaagcaagaatttcttgatttggcaactagagctggatttagaggcatcaattatgattgttg |
218 |
Q |
| |
|
||||||||||| | || |||||||||||||||||||||||||||||| | ||||||||||||| || ||||||||| ||||||| ||||| ||||| |
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| T |
28723460 |
tgatgatgactatgaacccaggaggaaaagagagaactaagcaagaattcatggatttggcaactaaagttggatttagtggcatcagatatgaatgttg |
28723361 |
T |
|
| Q |
219 |
tgttcgtaacaaatgggttatggagatctttaaataaagagca |
261 |
Q |
| |
|
||| |||| |||||||||||| ||||||| ||||||||| |
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| T |
28723360 |
tgtctgtaatttttgggttatggagttctttaagtaaagagca |
28723318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 19 - 261
Target Start/End: Complemental strand, 28731202 - 28730960
Alignment:
| Q |
19 |
gctatccctaatgatgggaaggtgattgttttagaggcacaaattcccactgtgcatgagaatgattatgcttcgaagtctacctctcaattagatgttc |
118 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| |||||| ||||| | | | | ||| |||||||||||||| | ||||||||| ||||||||||||| |
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|
| T |
28731202 |
gctattcctaatgatggaaaggtgattgttttggaggcatttattcctattatacctgataatgattatgcttcaaggtctacctcccaattagatgttc |
28731103 |
T |
|
| Q |
119 |
tgatgatgactcaaaccctaggaggaaaagagagaactaagcaagaatttcttgatttggcaactagagctggatttagaggcatcaattatgattgttg |
218 |
Q |
| |
|
||||||||||| | || |||||||||||||||||||||||||||||| | ||||||||||||| || ||||||||| ||||||| ||||| ||||| |
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| T |
28731102 |
tgatgatgactatgaacccaggaggaaaagagagaactaagcaagaattcatggatttggcaactaaagttggatttagtggcatcagatatgaatgttg |
28731003 |
T |
|
| Q |
219 |
tgttcgtaacaaatgggttatggagatctttaaataaagagca |
261 |
Q |
| |
|
||| |||| |||||||||||| ||||||| ||||||||| |
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| T |
28731002 |
tgtctgtaatttttgggttatggagttctttaagtaaagagca |
28730960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 79 - 251
Target Start/End: Complemental strand, 28708141 - 28707969
Alignment:
| Q |
79 |
aatgattatgcttcgaagtctacctctcaattagatgttctgatgatgactcaaaccctaggaggaaaagagagaactaagcaagaatttcttgatttgg |
178 |
Q |
| |
|
|||| ||||||||||| ||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||| | ||||||| |
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|
| T |
28708141 |
aatggttatgcttcgaggtctacctcccaattagatgttctgatgatgactcaatacccaggaggaaaagagagaaataagcaagaattcatggatttgg |
28708042 |
T |
|
| Q |
179 |
caactagagctggatttagaggcatcaattatgattgttgtgttcgtaacaaatgggttatggagatctttaa |
251 |
Q |
| |
|
|||||| || ||||||||| ||||||| ||||| ||| |||| |||| |||||||||||| ||||||| |
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|
| T |
28708041 |
caactaaagttggatttagtggcatcagatatgaatgtcgtgtctgtaatttctgggttatggagttctttaa |
28707969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0591 (Bit Score: 124; Significance: 8e-64; HSPs: 1)
Name: scaffold0591
Description:
Target: scaffold0591; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 19 - 274
Target Start/End: Original strand, 8326 - 8581
Alignment:
| Q |
19 |
gctatccctaatgatgggaaggtgattgttttagaggcacaaattcccactgtgcatgagaatgattatgcttcgaagtctacctctcaattagatgttc |
118 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||| ||||||| ||||||||| ||||||||||||||||| ||||||| |
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|
| T |
8326 |
gctatccctaatgatggaaaggtgattgttttagaggcacatattcccattgtgcctgagaatagttatgcttcaaagtctacctctcaattggatgttc |
8425 |
T |
|
| Q |
119 |
tgatgatgactcaaaccctaggaggaaaagagagaactaagcaagaatttcttgatttggcaactagagctggatttagaggcatcaattatgattgttg |
218 |
Q |
| |
|
||||||||||||||| | |||||||||||| ||||||||||||| || |||||||||||||||||| |||||||| ||||| | | ||| ||||| |
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|
| T |
8426 |
tgatgatgactcaaagtccaggaggaaaagaacgaactaagcaagagttcattgatttggcaactagagttggatttattggcataagatgtgaatgttg |
8525 |
T |
|
| Q |
219 |
tgttcgtaacaaatgggttatggagatctttaaataaagagcacatgctaatgcta |
274 |
Q |
| |
|
|||||||||| |||||||||||| ||||||| | ||||||| ||| ||||||| |
|
|
| T |
8526 |
tgttcgtaacttttgggttatggagttctttaagtgaagagcatgtgcaaatgcta |
8581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 203
Target Start/End: Complemental strand, 49106445 - 49106348
Alignment:
| Q |
106 |
caattagatgttctgatgatgactcaaaccctaggaggaaaagagagaactaagcaagaatttcttgatttggcaactagagctggatttagaggcat |
203 |
Q |
| |
|
|||| ||||||||| ||||||||||||| | |||||| ||||| | ||| |||||||||| | ||||| |||| | ||||||||||||| ||||| |
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| T |
49106445 |
caatcagatgttctaatgatgactcaaagtccaggagggaaagaacgtactgagcaagaattcatggatttagcaaatggagctggatttagtggcat |
49106348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 29648979 - 29649052
Alignment:
| Q |
145 |
aaagagagaactaagcaagaatttcttgatttggcaactagagctggatttagaggcatcaattatgattgttg |
218 |
Q |
| |
|
|||||||||||||| |||||||| | ||| ||||||||| ||||||||| | |||||||| ||||| ||||| |
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|
| T |
29648979 |
aaagagagaactaaacaagaattcatggatatggcaactaatgctggatttcgtggcatcaaatatgaatgttg |
29649052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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