View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11745_high_132 (Length: 292)

Name: NF11745_high_132
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11745_high_132
NF11745_high_132
[»] chr4 (2 HSPs)
chr4 (19-272)||(23563439-23563691)
chr4 (23-270)||(48265134-48265390)
[»] chr3 (2 HSPs)
chr3 (23-270)||(52314380-52314627)
chr3 (23-270)||(53464790-53465037)
[»] chr1 (3 HSPs)
chr1 (23-270)||(19991217-19991463)
chr1 (139-270)||(7386457-7386588)
chr1 (189-270)||(19322652-19322733)
[»] chr5 (3 HSPs)
chr5 (23-270)||(35205675-35205921)
chr5 (23-270)||(35211229-35211475)
chr5 (160-270)||(4925268-4925378)
[»] chr8 (1 HSPs)
chr8 (23-270)||(40278514-40278752)
[»] chr2 (1 HSPs)
chr2 (201-270)||(39375535-39375604)


Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 272
Target Start/End: Original strand, 23563439 - 23563691
Alignment:
Q  19 tgatgagaaatgtatagtttgttggcttgaataaatgtatattaccgttgggcttctcttcaataatataaatattaattaaaagnnnnnnnnnnctcaa 118  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||          |||||    
T  23563439 tgatgagaaatgtatagtttgttggcttgaataaatgtacattaccgttggacttctcttcaataatataaatattaattaaaagaaaaaaaaa-ctcaa 23563537  T
Q  119 aagtaatagaagatgtgcacaaatctgacaattgcaggaaaaggaaggtagtaatgcattactaccatagatagtttaactactcaatttcaatgtcaat 218  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  23563538 atgtaatagaagatgtgcacaaatctgacaattgcaggaaaaggaaggtagtaatgcattaccaccatggatagtttaactactcaatttcaatgtcaat 23563637  T
Q  219 tatccatgatcttatgacacaaaagcattgggcagtgtgataccacccatatat 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23563638 tatccatgatcttatgacacaaaagcattgggcagtgtgataccacccatatat 23563691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 23 - 270
Target Start/End: Original strand, 48265134 - 48265390
Alignment:
Q  23 gagaaatgtatagtttgttggcttgaataaa-tgtatattaccgttgggcttctcttcaataatataaatattaattaaaagnnnnnnnnnnctcaaaag 121  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||    
T  48265134 gagaaatgtatagtttgttggcttgaataaaatatatattaccgttgggcttctcttcaataatataaatattaattaaaagaaaaaaaaaactcaaaag 48265233  T
Q  122 taatagaagatgtgcacaaatctgacaattgcaggaaaaggaaggtagt--------aatgcattactaccatagatagtttaactactcaatttcaatg 213  Q
    ||||| || ||||||||||||| ||||||||||||||||||||||||||        |||||||||||||||| ||||||||||||||||||||||||||    
T  48265234 taatacaaaatgtgcacaaatcagacaattgcaggaaaaggaaggtagtaatatagtaatgcattactaccatggatagtttaactactcaatttcaatg 48265333  T
Q  214 tcaattatccatgatcttatgacacaaaagcattgggcagtgtgataccacccatat 270  Q
     ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  48265334 ccaattatccatgatcttatgacacaaaagcattggacagtgtgataccacccatat 48265390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 178; Significance: 5e-96; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 23 - 270
Target Start/End: Original strand, 52314380 - 52314627
Alignment:
Q  23 gagaaatgtatagtttgttggcttgaataaatgtatattaccgttgggcttctcttcaataatataaatattaattaaaagnnnnnnnnnnctcaaaagt 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||    
T  52314380 gagaaatgtatagtttgttggcttgaataaatgtatattaccgttgggcttctcttcaataatataaatattaattaaaagaaaaaaaaa-ctcaaaagt 52314478  T
Q  123 aatagaagatgtgcacaaa-tctgacaattgcaggaaaaggaaggtagtaatgcattactaccatagatagtttaactactcaatttcaatgtcaattat 221  Q
    |||| || ||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  52314479 aatacaaaatgtgcacaaaatcagacaattgcaggaaaaggaaggtagtaatgcattactaccatggatagtttaactactcaatttcaatgccaattat 52314578  T
Q  222 ccatgatcttatgacacaaaagcattgggcagtgtgataccacccatat 270  Q
     |||||||||||||||||||||||||||||| |||||||||||||||||    
T  52314579 tcatgatcttatgacacaaaagcattgggcaatgtgataccacccatat 52314627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 23 - 270
Target Start/End: Original strand, 53464790 - 53465037
Alignment:
Q  23 gagaaatgtatagtttgttggcttgaataaatgtatattaccgttgggcttctcttcaataatataaatattaattaaaagnnnnnnnnnnctcaaaagt 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||    
T  53464790 gagaaatgtatagtttgttggcttgaataaatgtatattaccgttgggcttctcttcaataatataaatattaattaaaagaaaaaaaaa-ctcaaaagt 53464888  T
Q  123 aatagaagatgtgcacaaa-tctgacaattgcaggaaaaggaaggtagtaatgcattactaccatagatagtttaactactcaatttcaatgtcaattat 221  Q
    |||| || ||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  53464889 aatacaaaatgtgcacaaaatcagacaattgcaggaaaaggaaggtagtaatgcattactaccatggatagtttaactactcaatttcaatgccaattat 53464988  T
Q  222 ccatgatcttatgacacaaaagcattgggcagtgtgataccacccatat 270  Q
     |||||||||||||||||||||||||||||| |||||||||||||||||    
T  53464989 tcatgatcttatgacacaaaagcattgggcaatgtgataccacccatat 53465037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 173; Significance: 5e-93; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 23 - 270
Target Start/End: Complemental strand, 19991463 - 19991217
Alignment:
Q  23 gagaaatgtatagtttgttggcttgaataaatgtatattaccgttgggcttctcttcaataatataaatattaattaaaagnnnnnnnnnnctcaaaagt 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||    
T  19991463 gagaaatgtatagtttgttggcttgaataaatgtatattaccgttgggcttctcttcaataatataaatattaattaaaagaaaaaaaaa-ctcaaaagt 19991365  T
Q  123 aatagaagatgtgcacaaatctgacaattgcaggaaaaggaaggtagtaatgcattactaccatagatagtttaactactcaatttcaatgtcaattatc 222  Q
    |||| || |||||||||||    |||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||| ||||||||    
T  19991364 aatacaaaatgtgcacaaaatcaacaattgcaggaaaaggaaggtagtaatccattattaccatggatagtttaactactcaatttcaatgccaattatc 19991265  T
Q  223 catgatcttatgacacaaaagcattgggcagtgtgataccacccatat 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  19991264 catgatcttatgacacaaaagcattgggcagtgtgataccacccatat 19991217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 139 - 270
Target Start/End: Original strand, 7386457 - 7386588
Alignment:
Q  139 aaatctgacaattgcaggaaaaggaaggtagtaatgcattactaccatagatagtttaactactcaatttcaatgtcaattatccatgatcttatgacac 238  Q
    ||||||||||||| |||||||||||| ||||||||||||| |||||||  ||| ||||||||||||||| ||| | |||||||||||||| |||||||||    
T  7386457 aaatctgacaattacaggaaaaggaacgtagtaatgcattgctaccatgtataatttaactactcaattccaaagccaattatccatgatattatgacac 7386556  T
Q  239 aaaagcattgggcagtgtgataccacccatat 270  Q
    || ||||||||  |||||||||||||||||||    
T  7386557 aagagcattggttagtgtgataccacccatat 7386588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 270
Target Start/End: Complemental strand, 19322733 - 19322652
Alignment:
Q  189 atagtttaactactcaatttcaatgtcaattatccatgatcttatgacacaaaagcattgggcagtgtgataccacccatat 270  Q
    |||||||||||||||||||  || | ||||||| |||||| ||||||||||| | | ||||  | ||| |||||||||||||    
T  19322733 atagtttaactactcaattctaaagccaattattcatgatattatgacacaagaacgttggttattgtaataccacccatat 19322652  T

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Target: chr5 (Bit Score: 162; Significance: 2e-86; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 23 - 270
Target Start/End: Original strand, 35205675 - 35205921
Alignment:
Q  23 gagaaatgtatagtttgttggcttgaataaatgtatattaccgttgggcttctcttcaataatataaatattaattaaaagnnnnnnnnnnctcaaaagt 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||    
T  35205675 gagaaatgtatagtttgttggcttgaataaatgtatattaccgttgggcttctcttcaataatataaatattaattaaaagaaaaaaaa--ctcaaaagt 35205772  T
Q  123 aatagaagatgtgcacaaa-tctgacaattgcaggaaaaggaaggtagtaatgcattactaccatagatagtttaactactcaatttcaatgtcaattat 221  Q
    |||| || ||||||||||| || |||||||||||||||||||||| |||||||||||||| |||| ||||||||||| |||||||||||||| |||||||    
T  35205773 aatacaaaatgtgcacaaaatcagacaattgcaggaaaaggaaggcagtaatgcattacttccatggatagtttaaccactcaatttcaatgccaattat 35205872  T
Q  222 ccatgatcttatgacacaaaagcattgggcagtgtgataccacccatat 270  Q
     |||||||||||||||||||||||||||| | |||||||||||||||||    
T  35205873 tcatgatcttatgacacaaaagcattgggtaatgtgataccacccatat 35205921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 23 - 270
Target Start/End: Complemental strand, 35211475 - 35211229
Alignment:
Q  23 gagaaatgtatagtttgttggcttgaataaatgtatattaccgttgggcttctcttcaataatataaatattaattaaaagnnnnnnnnnnctcaaaagt 122  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||          |||||||||    
T  35211475 gagaaatgtatagtttgttggcttgaataaatgtatattactgttgggcttctcttcaataatataaatattaattaaaagaaaaaaaa--ctcaaaagt 35211378  T
Q  123 aatagaagatgtgcacaaa-tctgacaattgcaggaaaaggaaggtagtaatgcattactaccatagatagtttaactactcaatttcaatgtcaattat 221  Q
    |||| || ||||||||||| || |||||||| ||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||| |||||||    
T  35211377 aatacaaaatgtgcacaaaatcagacaattgtaggaaaaggaaggcagtaatgcattactaccatggatagtttaaccactcaatttcaatgccaattat 35211278  T
Q  222 ccatgatcttatgacacaaaagcattgggcagtgtgataccacccatat 270  Q
     |||||||||||||||||||||||||||| | |||||||||||||||||    
T  35211277 tcatgatcttatgacacaaaagcattgggtaatgtgataccacccatat 35211229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 160 - 270
Target Start/End: Original strand, 4925268 - 4925378
Alignment:
Q  160 aggaaggtagtaatgcattactaccatagatagtttaactactcaatttcaatgtcaattatccatgatcttatgacacaaaagcattgggcagtgtgat 259  Q
    ||||| |||||||||||||  ||||||  ||||||||||||||||||| ||| | |||||||||||||| ||||||||||| ||||||||  ||||||||    
T  4925268 aggaacgtagtaatgcattgttaccatgtatagtttaactactcaattccaaagccaattatccatgatattatgacacaagagcattggttagtgtgat 4925367  T
Q  260 accacccatat 270  Q
    |||||||||||    
T  4925368 accacccatat 4925378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 23 - 270
Target Start/End: Complemental strand, 40278752 - 40278514
Alignment:
Q  23 gagaaatgtatagtttgttggcttgaataaatgtatattaccgttgggcttctcttcaataatataaatattaattaaaagnnnnnnnnnnctcaaaagt 122  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||          |||||||||    
T  40278752 gagaaatgtatagtttgttggcttgaataaatatatattactgttgggcttctcttcaataatataaatattaattaaaagaaaaaaaa--ctcaaaagt 40278655  T
Q  123 aatagaagatgtgcacaaatctgacaattgcaggaaaaggaaggtagtaatgcattactaccatagatagtttaactactcaatttcaatgtcaattatc 222  Q
    |||| || ||||||||||||| ||||||||| ||||||||||||||||||       ||||||| |||||||||||||||||||||||||||||||||||    
T  40278654 aatacaaaatgtgcacaaatcagacaattgctggaaaaggaaggtagtaa-------ctaccatggatagtttaactactcaatttcaatgtcaattatc 40278562  T
Q  223 catgatcttatgacacaaaagcattgggcagtgtgataccacccatat 270  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||    
T  40278561 catgattttatgacacaaaagcattggccagtgtgataccacccatat 40278514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 270
Target Start/End: Complemental strand, 39375604 - 39375535
Alignment:
Q  201 ctcaatttcaatgtcaattatccatgatcttatgacacaaaagcattgggcagtgtgataccacccatat 270  Q
    ||||||| ||| | |||||||||||||| ||||||||||| || |||||  ||| |||||||||||||||    
T  39375604 ctcaattccaaagccaattatccatgatattatgacacaagagtattggttagtatgataccacccatat 39375535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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