View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_high_140 (Length: 273)
Name: NF11745_high_140
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_high_140 |
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Alignment Details
Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 132
Target Start/End: Complemental strand, 18204703 - 18204589
Alignment:
| Q |
18 |
ccgccaaatccatttccttctccttaaaaccacctcctgactccaataacaactccgcctctcccacctctctccccttccgccgtccttctaaaccccc |
117 |
Q |
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| T |
18204703 |
ccgccaaatccatttccttctccttaaaaccacctcctgactccaataacaactccgcctctcccacctctctccccttccgccgtccttctaaaccccc |
18204604 |
T |
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| Q |
118 |
cattatcaagactac |
132 |
Q |
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|||| |||| ||||| |
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| T |
18204603 |
cattctcaaaactac |
18204589 |
T |
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Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 206 - 270
Target Start/End: Complemental strand, 18204521 - 18204457
Alignment:
| Q |
206 |
gctttccattcctctaatcctctttctaacaagctctggctcactagcaaaatctctgctcctcc |
270 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
18204521 |
gctttccattcctctaatcctctttctaacaagctctggctcactagcaaaatctctcctcctcc |
18204457 |
T |
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