View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11745_high_15 (Length: 587)

Name: NF11745_high_15
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11745_high_15
NF11745_high_15
[»] chr3 (3 HSPs)
chr3 (1-565)||(41036624-41037188)
chr3 (369-422)||(47542542-47542595)
chr3 (370-422)||(21161498-21161550)
[»] chr6 (3 HSPs)
chr6 (370-419)||(10760844-10760892)
chr6 (370-402)||(17422274-17422306)
chr6 (355-415)||(24102049-24102109)
[»] chr1 (5 HSPs)
chr1 (353-414)||(43328458-43328519)
chr1 (263-302)||(9871490-9871529)
chr1 (360-402)||(47892675-47892717)
chr1 (127-171)||(9871340-9871384)
chr1 (370-422)||(43609817-43609869)
[»] scaffold0373 (1 HSPs)
scaffold0373 (357-419)||(1220-1280)
[»] chr8 (7 HSPs)
chr8 (370-421)||(43300520-43300571)
chr8 (353-415)||(6501486-6501548)
chr8 (353-406)||(11815820-11815873)
chr8 (370-415)||(31586283-31586328)
chr8 (369-413)||(2517114-2517158)
chr8 (369-421)||(34259795-34259847)
chr8 (371-415)||(43534933-43534977)
[»] chr5 (4 HSPs)
chr5 (362-413)||(39828466-39828517)
chr5 (370-408)||(16315881-16315919)
chr5 (353-414)||(38588299-38588360)
chr5 (370-422)||(5616211-5616263)
[»] chr4 (5 HSPs)
chr4 (357-419)||(6844647-6844707)
chr4 (369-403)||(25795782-25795816)
chr4 (362-419)||(30127676-30127733)
chr4 (371-419)||(3587929-3587977)
chr4 (369-421)||(19262924-19262976)
[»] chr2 (1 HSPs)
chr2 (353-420)||(33498619-33498686)


Alignment Details
Target: chr3 (Bit Score: 541; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 1 - 565
Target Start/End: Complemental strand, 41037188 - 41036624
Alignment:
Q  1 agggaaatgaagaggagtagagatatagagaagagatcagagataaactctgccattgaagagctttcagtgcttgttatagtcaaacctgaagaagatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41037188 agggaaatgaagaggagtagagatatagagaagagatcagagataaactctgccattgaagagctttcagtgcttgttatagtcaaacctgaagaagatc 41037089  T
Q  101 atgagtctggtgcacgcatcccaacaaagcctttcctatctttatgttacatggttctacaagttcttggttagtaccaacatttttcatttatttttaa 200  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41037088 atgaggctggtgcacgcatcccaacaaagcctttcctatctttatgttacatggttctacaagttcttggttagtaccaacatttttcatttatttttaa 41036989  T
Q  201 tcatgatagttatgtaacaccaaacaaattttaagtatgttttttattgattgattgtcttgcagataaggtagggccaacaatggctgttttgagacaa 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  41036988 tcatgatagttatgtaacaccaaacaaattttaagtatgttttttattgattgattatcttgcagataaggtagggccaacaatggctgttttgagacaa 41036889  T
Q  301 gacattcaccagaatattaaggtaaccaaatactcgcacacacatgacatggtgacaccttgacacatgtaataatttgagaaaatgatatagttgaatg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41036888 gacattcaccagaatattaaggtaaccaaatactcgcacacacatgacatggtgacaccttgacacatgtaataatttgagaaaatgatatagttgaatg 41036789  T
Q  401 taaccacacgtgtcgatgttgtctcaccggcggacacgagacaagtttttaatttgaagttacttttttcagttaacatatagttagttacacattggtc 500  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  41036788 taaccacacgtgtcgatgttgtctcagtggcggacacgagacaagtttttagtttgaaattacttttttcagttaacatatagttagttacacattggtc 41036689  T
Q  501 aaacaaattaacatgcagctatgatcaatgtgctattgagttatgctatgtgtcattgcattgca 565  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41036688 aaacaaattaacatgcagctatgatcaatgtgctattgagttatgctatgtgtcattgcattgca 41036624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 422
Target Start/End: Original strand, 47542542 - 47542595
Alignment:
Q  369 gtaataatttgagaaaatgatatagttgaatgtaaccacacgtgtcgatgttgt 422  Q
    ||||||||||||||||||||  || |||||||||| |||| |||||| ||||||    
T  47542542 gtaataatttgagaaaatgaactatttgaatgtaatcacatgtgtcggtgttgt 47542595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 370 - 422
Target Start/End: Complemental strand, 21161550 - 21161498
Alignment:
Q  370 taataatttgagaaaatgatatagttgaatgtaaccacacgtgtcgatgttgt 422  Q
    ||||||||||| ||||| ||||||||||||||||  | | |||||||||||||    
T  21161550 taataatttgaaaaaataatatagttgaatgtaattatatgtgtcgatgttgt 21161498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 370 - 419
Target Start/End: Complemental strand, 10760892 - 10760844
Alignment:
Q  370 taataatttgagaaaatgatatagttgaatgtaaccacacgtgtcgatgt 419  Q
    ||||||||||||||||||| ||| |||||||||| |||||||||||||||    
T  10760892 taataatttgagaaaatgacata-ttgaatgtaatcacacgtgtcgatgt 10760844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 370 - 402
Target Start/End: Complemental strand, 17422306 - 17422274
Alignment:
Q  370 taataatttgagaaaatgatatagttgaatgta 402  Q
    ||||||||||||||||||||||| |||||||||    
T  17422306 taataatttgagaaaatgatataattgaatgta 17422274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 355 - 415
Target Start/End: Complemental strand, 24102109 - 24102049
Alignment:
Q  355 acaccttgacacatgtaataatttgagaaaatgatatagttgaatgtaaccacacgtgtcg 415  Q
    |||| |||||||  ||||||||||||| || |||  || ||||||||||||||||||||||    
T  24102109 acactttgacactggtaataatttgagtaagtgaactatttgaatgtaaccacacgtgtcg 24102049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 353 - 414
Target Start/End: Original strand, 43328458 - 43328519
Alignment:
Q  353 tgacaccttgacacatgtaataatttgagaaaatgatatagttgaatgtaaccacacgtgtc 414  Q
    |||||| ||||||| | ||||||||||||||||||| ||| || |||||||||||| |||||    
T  43328458 tgacacgttgacacttataataatttgagaaaatgaaataatttaatgtaaccacatgtgtc 43328519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 302
Target Start/End: Original strand, 9871490 - 9871529
Alignment:
Q  263 cagataaggtagggccaacaatggctgttttgagacaaga 302  Q
    |||||||  |||||||||||||||||||||||||||||||    
T  9871490 cagataaaatagggccaacaatggctgttttgagacaaga 9871529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 360 - 402
Target Start/End: Original strand, 47892675 - 47892717
Alignment:
Q  360 ttgacacatgtaataatttgagaaaatgatatagttgaatgta 402  Q
    ||||||||||||||||||||||||| ||| ||| |||||||||    
T  47892675 ttgacacatgtaataatttgagaaagtgaaatatttgaatgta 47892717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 9871340 - 9871384
Alignment:
Q  127 aagcctttcctatctttatgttacatggttctacaagttcttggt 171  Q
    ||||||||||| ||| |||||||  ||||||||||||||||||||    
T  9871340 aagcctttcctctctatatgttatttggttctacaagttcttggt 9871384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 370 - 422
Target Start/End: Complemental strand, 43609869 - 43609817
Alignment:
Q  370 taataatttgagaaaatgatatagttgaatgtaaccacacgtgtcgatgttgt 422  Q
    ||||||||||||||||| | ||| |||||||||| |||| ||||| |||||||    
T  43609869 taataatttgagaaaataacataattgaatgtaatcacatgtgtccatgttgt 43609817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 419
Target Start/End: Complemental strand, 1280 - 1220
Alignment:
Q  357 accttgacacatgtaataatttgagaaaatgatatagttgaatgtaaccacacgtgtcgatgt 419  Q
    |||||||||| ||||||||||||||||||||  | | |||||||||| |||| ||||||||||    
T  1280 accttgacacgtgtaataatttgagaaaatg--acaattgaatgtaatcacatgtgtcgatgt 1220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 421
Target Start/End: Original strand, 43300520 - 43300571
Alignment:
Q  370 taataatttgagaaaatgatatagttgaatgtaaccacacgtgtcgatgttg 421  Q
    ||||||||||||||| | | ||| |||||||||| |||||||||||||||||    
T  43300520 taataatttgagaaagttaaatatttgaatgtaatcacacgtgtcgatgttg 43300571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 353 - 415
Target Start/End: Original strand, 6501486 - 6501548
Alignment:
Q  353 tgacaccttgacacatgtaataatttgagaaaatgatatagttgaatgtaaccacacgtgtcg 415  Q
    |||||| |||||||  |||||||||||||| ||||| ||| || |||||||||||| ||||||    
T  6501486 tgacacgttgacactggtaataatttgagagaatgaaataattaaatgtaaccacatgtgtcg 6501548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 406
Target Start/End: Original strand, 11815820 - 11815873
Alignment:
Q  353 tgacaccttgacacatgtaataatttgagaaaatgatatagttgaatgtaacca 406  Q
    |||||| |||||||   |||||||||||||||||| |||| |||||||||||||    
T  11815820 tgacacgttgacaccaataataatttgagaaaatgttataattgaatgtaacca 11815873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 415
Target Start/End: Complemental strand, 31586328 - 31586283
Alignment:
Q  370 taataatttgagaaaatgatatagttgaatgtaaccacacgtgtcg 415  Q
    ||||||||||||||||||||||| |  ||||||| |||||||||||    
T  31586328 taataatttgagaaaatgatataatataatgtaatcacacgtgtcg 31586283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 369 - 413
Target Start/End: Original strand, 2517114 - 2517158
Alignment:
Q  369 gtaataatttgagaaaatgatatagttgaatgtaaccacacgtgt 413  Q
    ||||||||||||||||||||  || ||||||||||| ||||||||    
T  2517114 gtaataatttgagaaaatgaattaattgaatgtaactacacgtgt 2517158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 369 - 421
Target Start/End: Complemental strand, 34259847 - 34259795
Alignment:
Q  369 gtaataatttgagaaaatgatatagttgaatgtaaccacacgtgtcgatgttg 421  Q
    |||||||||||||||||||| ||| |||||| |||| | |||||||| |||||    
T  34259847 gtaataatttgagaaaatgaaataattgaatataactagacgtgtcggtgttg 34259795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 371 - 415
Target Start/End: Original strand, 43534933 - 43534977
Alignment:
Q  371 aataatttgagaaaatgatatagttgaatgtaaccacacgtgtcg 415  Q
    |||||||||||||||||| ||| ||||||||||| ||| ||||||    
T  43534933 aataatttgagaaaatgaaatatttgaatgtaactacatgtgtcg 43534977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 413
Target Start/End: Original strand, 39828466 - 39828517
Alignment:
Q  362 gacacatgtaataatttgagaaaatgatatagttgaatgtaaccacacgtgt 413  Q
    ||||| |||||||||||||||| |||| ||| ||||||||||||||| ||||    
T  39828466 gacacttgtaataatttgagaatatgaaataattgaatgtaaccacatgtgt 39828517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 370 - 408
Target Start/End: Original strand, 16315881 - 16315919
Alignment:
Q  370 taataatttgagaaaatgatatagttgaatgtaaccaca 408  Q
    |||||||||||| |||||||||| |||||||||||||||    
T  16315881 taataatttgaggaaatgatataattgaatgtaaccaca 16315919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 414
Target Start/End: Complemental strand, 38588360 - 38588299
Alignment:
Q  353 tgacaccttgacacatgtaataatttgagaaaatgatatagttgaatgtaaccacacgtgtc 414  Q
    |||||| |||||||| |||||||||||||||| ||| ||| | |||| |||||||| |||||    
T  38588360 tgacacgttgacacaagtaataatttgagaaagtgaaatattagaatctaaccacatgtgtc 38588299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 370 - 422
Target Start/End: Complemental strand, 5616263 - 5616211
Alignment:
Q  370 taataatttgagaaaatgatatagttgaatgtaaccacacgtgtcgatgttgt 422  Q
    ||||||||||| ||||| ||||||||||||||||  | | |||||||||||||    
T  5616263 taataatttgaaaaaataatatagttgaatgtaattatatgtgtcgatgttgt 5616211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 419
Target Start/End: Complemental strand, 6844707 - 6844647
Alignment:
Q  357 accttgacacatgtaataatttgagaaaatgatatagttgaatgtaaccacacgtgtcgatgt 419  Q
    |||||||||| ||||||||||||||||||||  | | |||||||||| |||| ||||||||||    
T  6844707 accttgacacgtgtaataatttgagaaaatg--acaattgaatgtaatcacatgtgtcgatgt 6844647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 369 - 403
Target Start/End: Complemental strand, 25795816 - 25795782
Alignment:
Q  369 gtaataatttgagaaaatgatatagttgaatgtaa 403  Q
    ||||||||||||||||||||||||||| |||||||    
T  25795816 gtaataatttgagaaaatgatatagttaaatgtaa 25795782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 419
Target Start/End: Complemental strand, 30127733 - 30127676
Alignment:
Q  362 gacacatgtaataatttgagaaaatgatatagttgaatgtaaccacacgtgtcgatgt 419  Q
    ||||||||| ||| ||||||||||||| ||  ||||||||||||||| ||||| ||||    
T  30127733 gacacatgtgatagtttgagaaaatgaaattattgaatgtaaccacatgtgtcaatgt 30127676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 371 - 419
Target Start/End: Original strand, 3587929 - 3587977
Alignment:
Q  371 aataatttgagaaaatgatatagttgaatgtaaccacacgtgtcgatgt 419  Q
    |||||||||||||| ||| ||| ||||||||||||||| ||||| ||||    
T  3587929 aataatttgagaaagtgaaatatttgaatgtaaccacatgtgtccatgt 3587977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 369 - 421
Target Start/End: Complemental strand, 19262976 - 19262924
Alignment:
Q  369 gtaataatttgagaaaatgatatagttgaatgtaaccacacgtgtcgatgttg 421  Q
    ||||||||||||||| |||| ||| |||||||||| |||| ||||| ||||||    
T  19262976 gtaataatttgagaagatgacataattgaatgtaatcacatgtgtcaatgttg 19262924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 420
Target Start/End: Original strand, 33498619 - 33498686
Alignment:
Q  353 tgacaccttgacacatgtaataatttgagaaaatgatatagttgaatgtaaccacacgtgtcgatgtt 420  Q
    |||||| | |||||| |||||||||||||||||||  ||| ||||||||||||  |||||||| ||||    
T  33498619 tgacacgtcgacacaagtaataatttgagaaaatggaataattgaatgtaacctgacgtgtcggtgtt 33498686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University