View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_high_157 (Length: 257)
Name: NF11745_high_157
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_high_157 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 43001749 - 43001500
Alignment:
| Q |
1 |
gtgaaataaaaacacacctggataagatggagcttcattaatgacatggggcaagtcaaaattaatggctttaatgttgggatacttagagacaatcatg |
100 |
Q |
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| T |
43001749 |
gtgaaataaaaacacacctggataagatggagcttcattaatgacatggggcaagtcaaaattaatggctttaatgttgggatacttagagacaatcatg |
43001650 |
T |
|
| Q |
101 |
ttagtaacagttccaattccaccaccaacatcaacaatagatccaagaccctcaaaacctgaatatgtttcaagaactttgttcattatgatactagagt |
200 |
Q |
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| T |
43001649 |
ttagtaacagttccaattccaccaccaacatcaacaatagatccaagaccctcaaaacctgaatatgtttcaagaactttgttcattatgatactagagt |
43001550 |
T |
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| Q |
201 |
aatcagacatgcccttgttgaaaatcttattggacctttgatctctgcta |
250 |
Q |
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| T |
43001549 |
aatcagacatgcccttgttgaaaatcttattggacctttgatctgtgcta |
43001500 |
T |
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Back To:
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Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 224
Target Start/End: Original strand, 42474171 - 42474379
Alignment:
| Q |
16 |
acctggataagatggagcttcattaatgacatggggcaagtcaaaattaatggctttaatgttgggatacttagagacaatcatgttagtaacagttcca |
115 |
Q |
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|||||||||||||||||| || | |||||||||||| || ||||||||||| | |||||| ||||||| || ||||||||| ||||| | |||| |||| |
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| T |
42474171 |
acctggataagatggagcatcttcaatgacatggggtaaatcaaaattaatacccttaatggtgggatattttgagacaatcgtgttaattacagctcca |
42474270 |
T |
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| Q |
116 |
attccaccaccaacatcaacaatagatccaagaccctcaaaacctgaatatgtttcaagaactttgttcattatgatactagagtaatcagacatgccct |
215 |
Q |
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| T |
42474271 |
gtaccaccacctacatcaacaagagatttaaggccttcaaaacctgtgtaggtctcaagaattttcttcattgtgatggtagagtgatcagacatcccct |
42474370 |
T |
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| Q |
216 |
tgttgaaaa |
224 |
Q |
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||||||||| |
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| T |
42474371 |
tgttgaaaa |
42474379 |
T |
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