View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_high_158 (Length: 256)
Name: NF11745_high_158
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_high_158 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 13 - 239
Target Start/End: Original strand, 44014243 - 44014469
Alignment:
| Q |
13 |
gagacatatgtaagaagttagtgtgtgttatacctgaggaatggcaaggctggcaatggtgagaccagaaatgacatcagaacgaagaagggtgagagta |
112 |
Q |
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| T |
44014243 |
gagacatatgtaagaagttagtgtgtgttatacctgaggaatggcaaggctggcaatggtgagaccagaaatgacatcagaacgaagaagggtgagagta |
44014342 |
T |
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| Q |
113 |
tactgagaaccccattgaaaaatggggaacaagaattgaagggtaagaagaaactttgtaaaagatggttggtttttgaaacggtgtaaaggatcatcag |
212 |
Q |
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| T |
44014343 |
tactgagaaccccattgaaaaatggggaacaagaattgaagggtaagaagaaactttgtaaaagatggttggtttttgaaacggtgtaaaggatcatcgg |
44014442 |
T |
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| Q |
213 |
ggaagaagatttcagagagtctgtgtt |
239 |
Q |
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| T |
44014443 |
ggaagaagatttcagagagtctgtgtt |
44014469 |
T |
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Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 42 - 234
Target Start/End: Complemental strand, 3172931 - 3172739
Alignment:
| Q |
42 |
atacctgaggaatggcaaggctggcaatggtgagaccagaaatgacatcagaacgaagaagggtgagagtatactgagaaccccattgaaaaatggggaa |
141 |
Q |
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| T |
3172931 |
atacctgaggaatggcgagactggcgatggtgagaccggatataatatcggagcgtaaaagattaagactatactgaggaccccattgaaaaatcggaaa |
3172832 |
T |
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| Q |
142 |
caagaattgaagggtaagaagaaactttgtaaaagatggttggtttttgaaacggtgtaaaggatcatcagggaagaagatttcagagagtct |
234 |
Q |
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| T |
3172831 |
catgtattgaagagccagaagaaactttgtgaaggaagtttggtttttgaatccatgaaaagggtcatcaggaaaaaagatttcagagagtct |
3172739 |
T |
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