View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11745_high_163 (Length: 251)
Name: NF11745_high_163
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_high_163 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 32 - 251
Target Start/End: Complemental strand, 36285968 - 36285763
Alignment:
| Q |
32 |
ggcatgtactcatcgaccaagatcttttcttctatttcaatgcagcagccaagaagtctaactaagttcctgtgttgaagcttagaaatcacctccactt |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36285968 |
ggcatgtactcatcgaccaagatcttttcttctacttcaatgcagcagccaagaagtctaactaagttcctgtgttgaagcttagaaatcacctccactt |
36285869 |
T |
|
| Q |
132 |
catttagaaactcttccatcccttgtctggatgctcttgaaagtcttttaactgctatgtcctgtccatcttcaaactttccctaacaataaaatagaaa |
231 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36285868 |
catttagaaactcttccattc--------------cttgaaagtcttttaactgctatgtcctgtccatcttcaaactttccctaacaataaaatagaaa |
36285783 |
T |
|
| Q |
232 |
aacttataaattgaaatgct |
251 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
36285782 |
aacttataaattgaaatgct |
36285763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 118 - 251
Target Start/End: Original strand, 16569446 - 16569579
Alignment:
| Q |
118 |
aatcacctccacttcatttagaaactcttccatcccttgtctggatgctcttgaaagtcttttaactgctatgtcctgtccatcttcaaactttccctaa |
217 |
Q |
| |
|
|||||||||||||| |||| ||| | ||||||||| ||| ||||| |||||||||| |||||||||||||||||| |||||| |||||||||| | |
|
|
| T |
16569446 |
aatcacctccacttaatttcaaaattattccatccccggtccggatggtcttgaaagtaatttaactgctatgtcctgcccatctagtaactttccctga |
16569545 |
T |
|
| Q |
218 |
caataaaatagaaaaacttataaattgaaatgct |
251 |
Q |
| |
|
||| |||| |||||| |||||||||||||||| |
|
|
| T |
16569546 |
aaattaaatgaaaaaacatataaattgaaatgct |
16569579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 203
Target Start/End: Complemental strand, 20279189 - 20279018
Alignment:
| Q |
32 |
ggcatgtactcatcgaccaagatcttttcttctatttcaatgcagcagccaagaagtctaactaagttcctgtgttgaagcttagaaatcacctccactt |
131 |
Q |
| |
|
||||||||||||| | ||| |||||||| || |||||| || || ||||||||| |||| | || | ||||||||||||| ||| ||| | |||| |
|
|
| T |
20279189 |
ggcatgtactcatacatcaacatcttttcatcaccttcaatacaacaaccaagaagtttaacaagattgcggtgttgaagcttacaaaggaccactactt |
20279090 |
T |
|
| Q |
132 |
catttagaaactcttccatcccttgtctggatgctcttgaaagtcttttaactgctatgtcctgtccatctt |
203 |
Q |
| |
|
|||| | ||| || |||| |||||||| ||||||||| |||||||||||||||||||| ||||| ||||||| |
|
|
| T |
20279089 |
cattcataaattcctccaacccttgtccggatgctctagaaagtcttttaactgctatttcctggccatctt |
20279018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 203
Target Start/End: Complemental strand, 20294253 - 20294117
Alignment:
| Q |
67 |
ttcaatgcagcagccaagaagtctaactaagttcctgtgttgaagcttagaaatcacctccacttcatttagaaactcttccatcccttgtctggatgct |
166 |
Q |
| |
|
|||||| |||||||||||||| || || | || | ||||||||||||| ||| ||| | |||||||| | || || |||| |||||||| |||||| |
|
|
| T |
20294253 |
ttcaatacagcagccaagaagccttacaagattacggtgttgaagcttacaaagaaccactacttcattcatgaattcctccaacccttgtccagatgct |
20294154 |
T |
|
| Q |
167 |
cttgaaagtcttttaactgctatgtcctgtccatctt |
203 |
Q |
| |
|
|| |||||||||||||||||||| ||||| ||||||| |
|
|
| T |
20294153 |
ctagaaagtcttttaactgctatttcctgaccatctt |
20294117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 203
Target Start/End: Original strand, 20168522 - 20168692
Alignment:
| Q |
33 |
gcatgtactcatcgaccaagatcttttcttctatttcaatgcagcagccaagaagtctaactaagttcctgtgttgaagcttagaaatcacctccacttc |
132 |
Q |
| |
|
|||||||||||| | ||| |||||||| || |||||| ||||| |||| |||||| || | || | ||||||||||||| |||| ||| | ||||| |
|
|
| T |
20168522 |
gcatgtactcatacatcaacatcttttcatcgccttcaatacagcaaccaacaagtcttacaagattgcggtgttgaagcttacaaataaccactacttc |
20168621 |
T |
|
| Q |
133 |
atttagaaactcttccatcccttgtctggatgctcttgaaagtcttttaactgctatgtcctgtccatctt |
203 |
Q |
| |
|
||| | ||||| | || |||||| | ||||||||||||||||||||||||||||| ||| | ||||||| |
|
|
| T |
20168622 |
attcatgaactcctgcagcccttgaccagatgctcttgaaagtcttttaactgctatttcccgaccatctt |
20168692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 103 - 203
Target Start/End: Complemental strand, 20283695 - 20283595
Alignment:
| Q |
103 |
gtgttgaagcttagaaatcacctccacttcatttagaaactcttccatcccttgtctggatgctcttgaaagtcttttaactgctatgtcctgtccatct |
202 |
Q |
| |
|
||||||||||||| ||||||| |||||||| | || || |||| ||||||| ||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
20283695 |
gtgttgaagcttactaatcaccattacttcattcatgaattcctccagaccttgtccagatgctcttgaaagtcttttaactgctatttcctgaccatct |
20283596 |
T |
|
| Q |
203 |
t |
203 |
Q |
| |
|
| |
|
|
| T |
20283595 |
t |
20283595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 203
Target Start/End: Complemental strand, 20303312 - 20303183
Alignment:
| Q |
74 |
cagcagccaagaagtctaactaagttcctgtgttgaagcttagaaatcacctccacttcatttagaaactcttccatcccttgtctggatgctcttgaaa |
173 |
Q |
| |
|
||||| ||||||||||| || | || | ||||||||||||| ||| ||| | |||||||| | || || |||| |||||||| || ||||| |||| |
|
|
| T |
20303312 |
cagcatccaagaagtcttacaagattacggtgttgaagcttacaaaggaccactacttcattcatgaattcctccaacccttgtccagacgctctagaaa |
20303213 |
T |
|
| Q |
174 |
gtcttttaactgctatgtcctgtccatctt |
203 |
Q |
| |
|
|||||||||||||||| ||||| ||||||| |
|
|
| T |
20303212 |
gtcttttaactgctatttcctgaccatctt |
20303183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 203
Target Start/End: Original strand, 20005798 - 20005934
Alignment:
| Q |
67 |
ttcaatgcagcagccaagaagtctaactaagttcctgtgttgaagcttagaaatcacctccacttcatttagaaactcttccatcccttgtctggatgct |
166 |
Q |
| |
|
||||||||||||||| | |||||| || | || | ||| ||||||||||||||||| | |||||||| | || ||||| | |||||||| ||||| | |
|
|
| T |
20005798 |
ttcaatgcagcagcctacaagtcttacaagattgcggtgctgaagcttagaaatcactacgacttcattcatgaattcttctaacccttgtccggatgat |
20005897 |
T |
|
| Q |
167 |
cttgaaagtcttttaactgctatgtcctgtccatctt |
203 |
Q |
| |
|
|| |||||||| ||||| ||||| |||| ||||||| |
|
|
| T |
20005898 |
ctcgaaagtctcttaaccgctatttccttaccatctt |
20005934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 189
Target Start/End: Complemental strand, 20273436 - 20273321
Alignment:
| Q |
74 |
cagcagccaagaagtctaactaagttcctgtgttgaagcttagaaatcacctccacttcatttagaaactcttccatcccttgtctggatgctcttgaaa |
173 |
Q |
| |
|
||||||||||||||||| || | || | ||||||||||||| ||| ||| | |||||||| | || || |||| |||||||| |||||| | |||| |
|
|
| T |
20273436 |
cagcagccaagaagtcttacaagattacggtgttgaagcttacaaagaaccactacttcattcatgaattcctccaacccttgtccagatgctttagaaa |
20273337 |
T |
|
| Q |
174 |
gtcttttaactgctat |
189 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
20273336 |
gtcttttaactgctat |
20273321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 192
Target Start/End: Complemental strand, 20243101 - 20243013
Alignment:
| Q |
104 |
tgttgaagcttagaaatcacctccacttcatttagaaactcttccatcccttgtctggatgctcttgaaagtcttttaactgctatgtc |
192 |
Q |
| |
|
|||||||||||| |||||||| ||||| || | || || |||| |||||||| |||||||| ||||| ||||||||||||||||| |
|
|
| T |
20243101 |
tgttgaagcttacaaatcaccaatacttcgttcatgaattcctccaacccttgtccagatgctctagaaagccttttaactgctatgtc |
20243013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 203
Target Start/End: Original strand, 2745869 - 2746040
Alignment:
| Q |
32 |
ggcatgtactcatcgaccaagatcttttcttctatttcaatgcagcagccaagaagtctaactaagttcctgtgttgaagcttagaaatcacctccactt |
131 |
Q |
| |
|
||||||||||||| |||||| ||||||||||| ||| ||||| ||||| ||||||||||| | || | ||||||||||| |||||||| ||||| |
|
|
| T |
2745869 |
ggcatgtactcatagaccaacatcttttcttcgccttcgatgcaacagcctagaagtctaacaagattgcgatgttgaagcttggaaatcacaatcactt |
2745968 |
T |
|
| Q |
132 |
catttagaaactcttccatcccttgtctggatgctcttgaaagtcttttaactgctatgtcctgtccatctt |
203 |
Q |
| |
|
|||| | ||| ||||| | ||| |||| ||||| ||||||||||||| |||||||| || ||||||||| |
|
|
| T |
2745969 |
cattcataaattcttctaacccctgtcctgatgcctttgaaagtcttttcactgctattgccagtccatctt |
2746040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 32 - 203
Target Start/End: Original strand, 2724039 - 2724210
Alignment:
| Q |
32 |
ggcatgtactcatcgaccaagatcttttcttctatttcaatgcagcagccaagaagtctaactaagttcctgtgttgaagcttagaaatcacctccactt |
131 |
Q |
| |
|
||||||||||||| |||||| ||||||||||| ||| ||||| ||||| | ||||||||| | || | ||||||||||| |||||||| ||||| |
|
|
| T |
2724039 |
ggcatgtactcatagaccaacatcttttcttcgccttcgatgcaacagcccaaaagtctaacaagattgcgatgttgaagcttggaaatcacaatcactt |
2724138 |
T |
|
| Q |
132 |
catttagaaactcttccatcccttgtctggatgctcttgaaagtcttttaactgctatgtcctgtccatctt |
203 |
Q |
| |
|
|||| | ||| ||||| | ||| |||| || || ||||||||||||| |||||||| ||| ||||||||| |
|
|
| T |
2724139 |
cattcataaattcttctagcccctgtcctgaagcctttgaaagtcttttcactgctatttccagtccatctt |
2724210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University