View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11745_high_167 (Length: 250)

Name: NF11745_high_167
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11745_high_167
NF11745_high_167
[»] chr2 (4 HSPs)
chr2 (1-237)||(13107002-13107238)
chr2 (11-71)||(28028164-28028225)
chr2 (11-71)||(33413660-33413721)
chr2 (11-71)||(13109068-13109128)
[»] chr7 (2 HSPs)
chr7 (11-71)||(37747678-37747739)
chr7 (11-71)||(37749243-37749304)
[»] scaffold0330 (1 HSPs)
scaffold0330 (29-71)||(16982-17024)
[»] scaffold0240 (1 HSPs)
scaffold0240 (29-71)||(1000-1042)
[»] chr1 (1 HSPs)
chr1 (11-72)||(3585611-3585673)
[»] chr8 (3 HSPs)
chr8 (11-71)||(14196917-14196978)
chr8 (11-71)||(43041420-43041481)
chr8 (13-71)||(43039530-43039589)
[»] chr6 (1 HSPs)
chr6 (29-65)||(34486291-34486327)
[»] chr3 (1 HSPs)
chr3 (27-73)||(54017247-54017293)


Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 13107238 - 13107002
Alignment:
Q  1 ttttacttagagtgtgagtgtgtgaaatcattctaatctttctctcgattctgtatgtgcatgttttatcatagagtacttatcgagaacgtataatggt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||    
T  13107238 ttttacttagagtgtgagtgtgtgaaatcattctaatctttctctcgattctgtatgtgcatgttttatcgtagagtacttatccagaatgtataatggt 13107139  T
Q  101 ttagagaaaaatgaaaagggtaaactgttgtttttggttcttgaatgtgagatacgttgccactataatctttgtacatgaaaattgttgatacatccat 200  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13107138 ttagagaaaaatgaaaagggtaaaccgttgtttttggttcttgaatgtgagatacgttgccactataatctttgtacatgaaaattgttgatacatccat 13107039  T
Q  201 gagtgtatcttttattggctttttagtcctcggatct 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  13107038 gagtgtatcttttattggctttttagtcctcggatct 13107002  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 28028164 - 28028225
Alignment:
Q  11 agtgtgagtgtgt-gaaatcattctaatctttctctcgattctgtatgtgcatgttttatca 71  Q
    ||||||||||||| || ||||||||||| |||||||| ||| |||||||||||||| |||||    
T  28028164 agtgtgagtgtgtagagatcattctaatatttctctcaattatgtatgtgcatgttctatca 28028225  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 33413721 - 33413660
Alignment:
Q  11 agtgtgagtgtgt-gaaatcattctaatctttctctcgattctgtatgtgcatgttttatca 71  Q
    ||||||||||||| || ||||||||| |||||||||| ||| |||||||||||||| |||||    
T  33413721 agtgtgagtgtgtagagatcattctattctttctctcaattatgtatgtgcatgttctatca 33413660  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 13109128 - 13109068
Alignment:
Q  11 agtgtgagtgtgtgaaatcattctaatctttctctcgattctgtatgtgcatgttttatca 71  Q
    ||||||||| ||||| |||||||| | ||||||||| ||||| |||||||||||| |||||    
T  13109128 agtgtgagtatgtgagatcattcttaactttctctcaattctatatgtgcatgttctatca 13109068  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 37747739 - 37747678
Alignment:
Q  11 agtgtgagtgtgt-gaaatcattctaatctttctctcgattctgtatgtgcatgttttatca 71  Q
    ||||||||||||| || |||||||||||||||||||||||| |||||||||||||| |||||    
T  37747739 agtgtgagtgtgtagagatcattctaatctttctctcgattatgtatgtgcatgttctatca 37747678  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 37749304 - 37749243
Alignment:
Q  11 agtgtgagtgtgt-gaaatcattctaatctttctctcgattctgtatgtgcatgttttatca 71  Q
    ||||||||||||| || |||||||||||||||||||| ||| |||||||||||||| |||||    
T  37749304 agtgtgagtgtgtagagatcattctaatctttctctcaattatgtatgtgcatgttctatca 37749243  T

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Target: scaffold0330 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 71
Target Start/End: Complemental strand, 17024 - 16982
Alignment:
Q  29 cattctaatctttctctcgattctgtatgtgcatgttttatca 71  Q
    ||||||||||||||||| ||||||||||||||||||| |||||    
T  17024 cattctaatctttctcttgattctgtatgtgcatgttctatca 16982  T

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Target: scaffold0240 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 71
Target Start/End: Complemental strand, 1042 - 1000
Alignment:
Q  29 cattctaatctttctctcgattctgtatgtgcatgttttatca 71  Q
    ||||||||||||||||| ||||||||||||||||||| |||||    
T  1042 cattctaatctttctcttgattctgtatgtgcatgttctatca 1000  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 3585611 - 3585673
Alignment:
Q  11 agtgtgagtgtgt-gaaatcattctaatctttctctcgattctgtatgtgcatgttttatcat 72  Q
    ||||||||||||| || |||||||||||||||||||| ||| ||||| |||||||| ||||||    
T  3585611 agtgtgagtgtgtagagatcattctaatctttctctcaattatgtatatgcatgttctatcat 3585673  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 14196917 - 14196978
Alignment:
Q  11 agtgtgagtgtgt-gaaatcattctaatctttctctcgattctgtatgtgcatgttttatca 71  Q
    ||||||||||||| || ||||||||||| |||||||| ||| |||||||||||||| |||||    
T  14196917 agtgtgagtgtgtagagatcattctaatttttctctcaattatgtatgtgcatgttctatca 14196978  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 43041420 - 43041481
Alignment:
Q  11 agtgtgagtgtgt-gaaatcattctaatctttctctcgattctgtatgtgcatgttttatca 71  Q
    ||||||||||||| || ||||||||||| |||||||| ||| |||||||||||||| |||||    
T  43041420 agtgtgagtgtgtagagatcattctaatatttctctcaattatgtatgtgcatgttctatca 43041481  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 43039530 - 43039589
Alignment:
Q  13 tgtgagtgtgt-gaaatcattctaatctttctctcgattctgtatgtgcatgttttatca 71  Q
    ||||||||||| || ||||||||||| |||||||| ||| |||||||||||||| |||||    
T  43039530 tgtgagtgtgtagagatcattctaatatttctctcaattatgtatgtgcatgttctatca 43039589  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 34486327 - 34486291
Alignment:
Q  29 cattctaatctttctctcgattctgtatgtgcatgtt 65  Q
    |||||||||||||||||||||| ||||||||||||||    
T  34486327 cattctaatctttctctcgattatgtatgtgcatgtt 34486291  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 73
Target Start/End: Original strand, 54017247 - 54017293
Alignment:
Q  27 atcattctaatctttctctcgattctgtatgtgcatgttttatcata 73  Q
    |||||||||||||||||||| ||| ||||||||| |||| |||||||    
T  54017247 atcattctaatctttctctcaattttgtatgtgcgtgttctatcata 54017293  T

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