View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_high_175 (Length: 246)
Name: NF11745_high_175
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_high_175 |
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Alignment Details
Target: chr7 (Bit Score: 100; Significance: 1e-49; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 131 - 238
Target Start/End: Complemental strand, 35501725 - 35501618
Alignment:
| Q |
131 |
ctgttacctattggaactggtgacagcaaattgagtccaaccacgtttctcaccttcccacttcaaaatcctaccatctgctacaccggtgtacggccca |
230 |
Q |
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| T |
35501725 |
ctgttacctattggaactggtgacagcaaattgagtccaaccacgttcctcaccttcccacttcaaaatcctaccatctgctacaccggtgtacggacca |
35501626 |
T |
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| Q |
231 |
tcaccatt |
238 |
Q |
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|||||||| |
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| T |
35501625 |
tcaccatt |
35501618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 134 - 238
Target Start/End: Complemental strand, 35509634 - 35509530
Alignment:
| Q |
134 |
ttacctattggaactggtgacagcaaattgagtccaaccacgtttctcaccttcccacttcaaaatcctaccatctgctacaccggtgtacggcccatca |
233 |
Q |
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| T |
35509634 |
ttacctattggagctggtgacagcaaattcagtccaaccacgttcctctccttcccattttaaaatccgaccatccgccacgccggtgtacggcccatca |
35509535 |
T |
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| Q |
234 |
ccatt |
238 |
Q |
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||||| |
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| T |
35509534 |
ccatt |
35509530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 134 - 223
Target Start/End: Complemental strand, 35487240 - 35487151
Alignment:
| Q |
134 |
ttacctattggaactggtgacagcaaattgagtccaaccacgtttctcaccttcccacttcaaaatcctaccatctgctacaccggtgta |
223 |
Q |
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| T |
35487240 |
ttacctattggaactcgtgacagcaaattcagtccaaccacgtttctttcctttccacttcaaaatccgaccatccgccacgccggtgta |
35487151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 35501859 - 35501790
Alignment:
| Q |
1 |
cagcctagctacactttaaatagaagtacaactaac----cactcatagtcaaagcacaaacctacccta |
66 |
Q |
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| T |
35501859 |
cagcctagctacactttaaatagaagtacaactaactaaccactcatagtcaaagcacaaacctacccta |
35501790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 134 - 223
Target Start/End: Complemental strand, 40157246 - 40157157
Alignment:
| Q |
134 |
ttacctattggaactggtgacagcaaattgagtccaaccacgtttctcaccttcccacttcaaaatcctaccatctgctacaccggtgta |
223 |
Q |
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||||||||||||||| ||||||||||||| ||||||||| |||| ||| ||||| |||||||||||| |||||| || || |||||||| |
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| T |
40157246 |
ttacctattggaactcgtgacagcaaattcagtccaacctcgttcctccccttcatacttcaaaatccgaccatccgccacgccggtgta |
40157157 |
T |
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