View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11745_high_176 (Length: 245)

Name: NF11745_high_176
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11745_high_176
NF11745_high_176
[»] chr1 (16 HSPs)
chr1 (12-245)||(2011789-2012016)
chr1 (12-245)||(2010379-2010606)
chr1 (12-128)||(2019703-2019819)
chr1 (12-245)||(2006281-2006523)
chr1 (160-245)||(2019598-2019683)
chr1 (59-245)||(6601779-6601959)
chr1 (181-245)||(6592643-6592707)
chr1 (68-105)||(2948497-2948534)
chr1 (68-105)||(3340472-3340509)
chr1 (64-105)||(4323139-4323180)
chr1 (70-131)||(9818941-9819002)
chr1 (68-115)||(3349336-3349383)
chr1 (77-136)||(3378667-3378726)
chr1 (67-105)||(3361682-3361720)
chr1 (58-136)||(6592526-6592604)
chr1 (184-245)||(3372517-3372578)
[»] chr2 (8 HSPs)
chr2 (54-108)||(20923438-20923492)
chr2 (172-245)||(20934287-20934360)
chr2 (181-245)||(20952831-20952895)
chr2 (181-245)||(39273876-39273940)
chr2 (55-105)||(20952962-20953012)
chr2 (164-245)||(20926902-20926984)
chr2 (51-105)||(20927040-20927094)
chr2 (164-245)||(20923304-20923385)
[»] chr5 (1 HSPs)
chr5 (68-105)||(17969825-17969862)


Alignment Details
Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 12 - 245
Target Start/End: Complemental strand, 2012016 - 2011789
Alignment:
Q  12 gaaaaatccacctatcaagagcagtcgcactgatcacaacacaatcagagagcttgaacttgttgattggcccagaataaagtaaaagtacatggtcgat 111  Q
    ||||||||||||||||||||||||||||||| || | | || ||  |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  2012016 gaaaaatccacctatcaagagcagtcgcactaatgagaccaaaaggagagagcttgaacttgttgattggcccataataaagtaaaagtacatggtcgat 2011917  T
Q  112 aattgccaaaagctttctcttgatagctgcagggtggtcagaaatcgatgttgcagacacacattgtgaatcaaacacaagatttggtattgtgatccat 211  Q
    |||||||||||||||||||||||||||||||||||| |||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2011916 aattgccaaaagctttctcttgatagctgcagggtgttca------gatgttgcagacacacattgtgaatcaaacacaagatttggtattgtgatccat 2011823  T
Q  212 ttgtacctccatttgtttgataaaacacttgttc 245  Q
    ||||||||||||||||||||||||| ||||||||    
T  2011822 ttgtacctccatttgtttgataaaatacttgttc 2011789  T

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Target: chr1; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 12 - 245
Target Start/End: Complemental strand, 2010606 - 2010379
Alignment:
Q  12 gaaaaatccacctatcaagagcagtcgcactgatcacaacacaatcagagagcttgaacttgttgattggcccagaataaagtaaaagtacatggtcgat 111  Q
    |||||||| ||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||    
T  2010606 gaaaaatctacctatcaaaagcagtcacactgatcacaccacaatcagagagcttgaacttgttgattggcccggaataaagtaaaagtacatgatcaat 2010507  T
Q  112 aattgccaaaagctttctcttgatagctgcagggtggtcagaaatcgatgttgcagacacacattgtgaatcaaacacaagatttggtattgtgatccat 211  Q
    |||||||||||||||||||| |||| ||  |||| |      |   ||||||||||| |||||||||  ||||||||||||||||||||||||| |||||    
T  2010506 aattgccaaaagctttctctcgataactaaagggcg------atgggatgttgcagagacacattgtttatcaaacacaagatttggtattgtggtccat 2010413  T
Q  212 ttgtacctccatttgtttgataaaacacttgttc 245  Q
    |||||||||||||||||  |||||||||||||||    
T  2010412 ttgtacctccatttgttgcataaaacacttgttc 2010379  T

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Target: chr1; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 12 - 128
Target Start/End: Complemental strand, 2019819 - 2019703
Alignment:
Q  12 gaaaaatccacctatcaagagcagtcgcactgatcacaacacaatcagagagcttgaacttgttgattggcccagaataaagtaaaagtacatggtcgat 111  Q
    ||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||    
T  2019819 gaaaaatccacctgtcaagagcagtcacactgatcacaccacaatcagagagcttgaacttgttgattggcccggaataaagtaaaagtacatgatcaat 2019720  T
Q  112 aattgccaaaagctttc 128  Q
    |||||||||||||||||    
T  2019719 aattgccaaaagctttc 2019703  T

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Target: chr1; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 12 - 245
Target Start/End: Complemental strand, 2006523 - 2006281
Alignment:
Q  12 gaaaaatccacctatcaagagcagtcgcactgatca------caacacaatcagagagcttgaacttgttgattggcccagaataaagtaaaagtacatg 105  Q
    |||||||||||||||||||||||||| |||| || |      || |||||  ||||| || |||||||||||||||||||||||||||||||||||| ||    
T  2006523 gaaaaatccacctatcaagagcagtctcactaatgagattgacaccacaacgagagatctggaacttgttgattggcccagaataaagtaaaagtacctg 2006424  T
Q  106 gtcgataattgccaaaagctttctcttgatagctgcagggtggtcagaaa---tcgatgttgcagacacacattgtgaatcaaacacaagatttggtatt 202  Q
     || |||||| ||| |||||||| ||  ||| ||  |    | || |||    | ||||||||||| |||||||||  ||||||||||||||||||||||    
T  2006423 atcaataatttccataagctttccctccatatctaaaaaaagttcggaacatttggatgttgcagagacacattgtttatcaaacacaagatttggtatt 2006324  T
Q  203 gtgatccatttgtacctccatttgtttgataaaacacttgttc 245  Q
    |||  ||||||||||||||||||||| ||||||||||||||||    
T  2006323 gtggcccatttgtacctccatttgttggataaaacacttgttc 2006281  T

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Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 160 - 245
Target Start/End: Complemental strand, 2019683 - 2019598
Alignment:
Q  160 tgttgcagacacacattgtgaatcaaacacaagatttggtattgtgatccatttgtacctccatttgtttgataaaacacttgttc 245  Q
    ||||||||| |||| ||||  || ||| ||||||||||| ||||||  ||||||||||||||||||||| ||||||||||||||||    
T  2019683 tgttgcagagacacgttgtttattaaatacaagatttggcattgtggcccatttgtacctccatttgttggataaaacacttgttc 2019598  T

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Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 59 - 245
Target Start/End: Original strand, 6601779 - 6601959
Alignment:
Q  59 gagagcttgaacttgttgattggcccagaataaagtaaaagtacatggtcgataattgccaaaagctttctcttgatagctgcagggtggtcagaaatcg 158  Q
    |||||||||||||| ||||||||||||||||  |||||||||||||| || ||||||  | |||| || ||||||||| ||  | |||  ||||||        
T  6601779 gagagcttgaactttttgattggcccagaatggagtaaaagtacatgatcaataattctcgaaagtttgctcttgataactaaaaggtcttcagaa---- 6601874  T
Q  159 atgttgcagacacacattgtgaatcaaacacaagatttggtattgtgatccatttgtacctccatttgtttgataaaacacttgttc 245  Q
      ||  | || | ||||||   |||||||||||||||||| | ||||  ||||||||||||||||||| ||||||||| ||||||||    
T  6601875 --gtgtcggagatacattggctatcaaacacaagatttggaagtgtggcccatttgtacctccatttggttgataaaatacttgttc 6601959  T

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Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 6592643 - 6592707
Alignment:
Q  181 atcaaacacaagatttggtattgtgatccatttgtacctccatttgtttgataaaacacttgttc 245  Q
    |||||||||||||||||| | |||| |||||||||||||||| ||| | ||||||| ||||||||    
T  6592643 atcaaacacaagatttggaagtgtggtccatttgtacctccagttggtagataaaatacttgttc 6592707  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 105
Target Start/End: Original strand, 2948497 - 2948534
Alignment:
Q  68 aacttgttgattggcccagaataaagtaaaagtacatg 105  Q
    |||||||||||||||||||||| |||||||||||||||    
T  2948497 aacttgttgattggcccagaatgaagtaaaagtacatg 2948534  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 105
Target Start/End: Complemental strand, 3340509 - 3340472
Alignment:
Q  68 aacttgttgattggcccagaataaagtaaaagtacatg 105  Q
    |||||||||||||||||||||| |||||||||||||||    
T  3340509 aacttgttgattggcccagaatgaagtaaaagtacatg 3340472  T

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Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 105
Target Start/End: Original strand, 4323139 - 4323180
Alignment:
Q  64 cttgaacttgttgattggcccagaataaagtaaaagtacatg 105  Q
    ||||||| |||||||||||||||||| |||||||||||||||    
T  4323139 cttgaacatgttgattggcccagaatgaagtaaaagtacatg 4323180  T

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Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 9818941 - 9819002
Alignment:
Q  70 cttgttgattggcccagaataaagtaaaagtacatggtcgataattgccaaaagctttctct 131  Q
    ||||||||||||||| |||| ||||||||||||||| || ||||||  ||||| ||||||||    
T  9818941 cttgttgattggcccggaatgaagtaaaagtacatgatcaataattctcaaaaactttctct 9819002  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 115
Target Start/End: Complemental strand, 3349383 - 3349336
Alignment:
Q  68 aacttgttgattggcccagaataaagtaaaagtacatggtcgataatt 115  Q
    |||||||||||| ||||||||| ||||||||||||||| || ||||||    
T  3349383 aacttgttgattagcccagaatgaagtaaaagtacatgatcaataatt 3349336  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 136
Target Start/End: Complemental strand, 3378726 - 3378667
Alignment:
Q  77 attggcccagaataaagtaaaagtacatggtcgataattgccaaaagctttctcttgata 136  Q
    ||||||||||||| ||||||||||||||| |||||||||  ||||| ||| |||| ||||    
T  3378726 attggcccagaatgaagtaaaagtacatgatcgataattctcaaaaacttgctctcgata 3378667  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 3361720 - 3361682
Alignment:
Q  67 gaacttgttgattggcccagaataaagtaaaagtacatg 105  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  3361720 gaacttgttgattggcccataatgaagtaaaagtacatg 3361682  T

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Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 136
Target Start/End: Original strand, 6592526 - 6592604
Alignment:
Q  58 agagagcttgaacttgttgattggcccagaataaagtaaaagtacatggtcgataattgccaaaagctttctcttgata 136  Q
    ||||||||||||||| |||||||| ||||||   |||||||||||||| || ||||||    ||||||| |||||||||    
T  6592526 agagagcttgaactttttgattggtccagaacggagtaaaagtacatgatcaataattcttgaaagcttgctcttgata 6592604  T

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Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 245
Target Start/End: Complemental strand, 3372578 - 3372517
Alignment:
Q  184 aaacacaagatttggtattgtgatccatttgtacctccatttgtttgataaaacacttgttc 245  Q
    ||||||||||||||||| ||||  |||||||| ||||||  || | ||||||||||||||||    
T  3372578 aaacacaagatttggtagtgtgtaccatttgttcctccagctgctggataaaacacttgttc 3372517  T

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Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 54 - 108
Target Start/End: Complemental strand, 20923492 - 20923438
Alignment:
Q  54 aatcagagagcttgaacttgttgattggcccagaataaagtaaaagtacatggtc 108  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  20923492 aatcagagatcttgaacttgttgattggcccagaatgaagtaaaagtacatggtc 20923438  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 245
Target Start/End: Complemental strand, 20934360 - 20934287
Alignment:
Q  172 acattgtgaatcaaacacaagatttggtattgtgatccatttgtacctccatttgtttgataaaacacttgttc 245  Q
    |||||||  |||||||||||||||||| | ||||  |||||||| ||||||||| || ||||||||||||||||    
T  20934360 acattgtctatcaaacacaagatttgggagtgtgtaccatttgttcctccattttttagataaaacacttgttc 20934287  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 181 - 245
Target Start/End: Complemental strand, 20952895 - 20952831
Alignment:
Q  181 atcaaacacaagatttggtattgtgatccatttgtacctccatttgtttgataaaacacttgttc 245  Q
    |||||||||||||||||| | |||| ||||||||| |||||||||  | ||||||||||||||||    
T  20952895 atcaaacacaagatttggaagtgtgttccatttgttcctccattttctagataaaacacttgttc 20952831  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 181 - 245
Target Start/End: Complemental strand, 39273940 - 39273876
Alignment:
Q  181 atcaaacacaagatttggtattgtgatccatttgtacctccatttgtttgataaaacacttgttc 245  Q
    |||||||||||||||||||| ||||  ||||||||||||||||| | | || |||||||||||||    
T  39273940 atcaaacacaagatttggtagtgtgtaccatttgtacctccattggctggacaaaacacttgttc 39273876  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 20953012 - 20952962
Alignment:
Q  55 atcagagagcttgaacttgttgattggcccagaataaagtaaaagtacatg 105  Q
    |||| ||| ||||||| |||||||||||||||||| |||||||||||||||    
T  20953012 atcatagaacttgaacatgttgattggcccagaatgaagtaaaagtacatg 20952962  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 245
Target Start/End: Complemental strand, 20926984 - 20926902
Alignment:
Q  164 gcagacacacattgtgaatcaaacacaagatttggtattgtgatccatttgtacctccatttgttt-gataaaacacttgttc 245  Q
    ||||| ||||||||   |||||| ||||||||||||| ||||  || ||||| ||||||||| ||| ||||||||||||||||    
T  20926984 gcagagacacattgactatcaaagacaagatttggtagtgtgtaccctttgttcctccatttttttagataaaacacttgttc 20926902  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 105
Target Start/End: Complemental strand, 20927094 - 20927040
Alignment:
Q  51 cacaatcagagagcttgaacttgttgattggcccagaataaagtaaaagtacatg 105  Q
    |||| ||||||| ||||||| |||||||||||||| ||| ||||||||| |||||    
T  20927094 cacactcagagaacttgaacatgttgattggcccataatgaagtaaaaggacatg 20927040  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 245
Target Start/End: Complemental strand, 20923385 - 20923304
Alignment:
Q  164 gcagacacacattgtgaatcaaacacaagatttggtattgtgatccatttgtacctccatttgtttgataaaacacttgttc 245  Q
    ||||| |||||||||  ||| ||||||||||  |||  ||||  |||||| | |||||||||||| ||||||||||||||||    
T  20923385 gcagatacacattgtttatcgaacacaagatccggttgtgtggaccattttttcctccatttgttagataaaacacttgttc 20923304  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 105
Target Start/End: Complemental strand, 17969862 - 17969825
Alignment:
Q  68 aacttgttgattggcccagaataaagtaaaagtacatg 105  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  17969862 aacttgttgattggccctgaatgaagtaaaagtacatg 17969825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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