View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_high_18 (Length: 574)
Name: NF11745_high_18
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 9 - 559
Target Start/End: Original strand, 24527263 - 24527811
Alignment:
| Q |
9 |
agcagagacaagtggggcttctgtacagtgttgaaggaaattaaaaatgagggtcgttgtgttagctttttgcagtgaaagtgagggtgttggacttgga |
108 |
Q |
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| T |
24527263 |
agcagaaacaagtggggcttctgtacagtgttgaaggaaattaaaaatgagggtcgttgtgttagctttttgcagtgaaagtgagtgtgttggacttg-a |
24527361 |
T |
|
| Q |
109 |
aaaagagttt-attagacgacataaaaagcagagaaagtagatgaaataaagatgtgttggcgtttctataattttcctctgaatattgttcaccttctt |
207 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24527362 |
aaaagagttttattagacgacataaaaagcagagaaagtagatgaaataaagatgtgttggcgtttctataattttcctctgaatattgttcaccttctt |
24527461 |
T |
|
| Q |
208 |
gctttctgtctctagttttgtgcctataaattttaatacagttaaaattgactatagtttttaaatttttgggttttcgagtacataaaaaacacaccct |
307 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24527462 |
gctttctgtctctagttttgtgcctataaatt--aatacagttaaaattgactatagtttttaaatttttgggttttcgagtacataaaaaacacaccct |
24527559 |
T |
|
| Q |
308 |
agattggtaatcacgtcacgtggtacctgatccgattgctccattgaatctttctcggttgtaattaaaaagccttctctattcttcatgtattttatgt |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24527560 |
agattggtaatcacgtcacgtggtacctgatccgattgctccattgaatctttctcggttgtaattaaaaagccttctctattcttcatgtattttatgt |
24527659 |
T |
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| Q |
408 |
ttaatcatgatattttaatagtaattcttagcagtaatagaagcactttgtcacctatgctgtgtattttgaccttgtctttttgaggatattagtgtaa |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24527660 |
ttaatcatgatattttaatagtaattcttagcagtaatagcagcactttgtcacctatgctgtgtattttgaccttgtctttttgaggatattagtgtaa |
24527759 |
T |
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| Q |
508 |
tgatgtttgtaatgtctgtttgttctgaattaacgtttgtttgagtggttag |
559 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
24527760 |
tgatgtttgtaatgtctgtttgctctgaattaacgtttgtttgagtggttag |
24527811 |
T |
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