View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_high_180 (Length: 243)
Name: NF11745_high_180
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_high_180 |
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| [»] scaffold0536 (3 HSPs) |
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Alignment Details
Target: scaffold0536 (Bit Score: 226; Significance: 1e-125; HSPs: 3)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 6085 - 5860
Alignment:
| Q |
1 |
cggcggagctgcattcatggcaatagaatgaggaagaccaggaattacaaatgaagcagattcataaagagagtgtgctttaacagattctatggcacaa |
100 |
Q |
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| T |
6085 |
cggcggagctgcattcatggcaatagaatgaggaagaccaggaattacaaatgaagcagattcataaagagagtgtgctttaacagattctatggcacaa |
5986 |
T |
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| Q |
101 |
attgcaaacagagagaaaccgttgaaactgagtctaggaatttgaagcttgtttgcaagttcatcaacccaaggaaacaagaaatccgccacaatgcaat |
200 |
Q |
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| T |
5985 |
attgcaaacagagagaaaccgttgaaactgagtctaggaatttgaagcttgtttgcaagttcatcaacccaaggaaacaagaaatccgccacaatgcaat |
5886 |
T |
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| Q |
201 |
ccggtgggtgctgctccacgaagtgt |
226 |
Q |
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| T |
5885 |
ccggtgggtgctgctccacgaagtgt |
5860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 10 - 226
Target Start/End: Complemental strand, 10060 - 9844
Alignment:
| Q |
10 |
tgcattcatggcaatagaatgaggaagaccaggaattacaaatgaagcagattcataaagagagtgtgctttaacagattctatggcacaaattgcaaac |
109 |
Q |
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| T |
10060 |
tgcattcatgacaatagaatgaggaagaccaggaattacaaaagaagcatatccataaagtgagtgtgctttaacagattccatggcacaaatagcaaac |
9961 |
T |
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| Q |
110 |
agagagaaaccgttgaaactgagtctaggaatttgaagcttgtttgcaagttcatcaacccaaggaaacaagaaatccgccacaatgcaatccggtgggt |
209 |
Q |
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| T |
9960 |
agagagaaaccgttgaaagagagtcttggaatttgaagcttgtttgcaagttcatcaacccaaggaaacaaaaaatctgtcacgatgcaatccggtgggt |
9861 |
T |
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| Q |
210 |
gctgctccacgaagtgt |
226 |
Q |
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| T |
9860 |
gctgctccacgaagtgt |
9844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 86 - 222
Target Start/End: Complemental strand, 948 - 812
Alignment:
| Q |
86 |
gattctatggcacaaattgcaaacagagagaaaccgttgaaactgagtctaggaatttgaagcttgtttgcaagttcatcaacccaaggaaacaagaaat |
185 |
Q |
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| T |
948 |
gattccatggcacatatggtaaatagtgagaaaccgttgaaggcaaatctcggaatgtgaagcttgtttgccagctcatccacccaagggaataaaaaat |
849 |
T |
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| Q |
186 |
ccgccacaatgcaatccggtgggtgctgctccacgaa |
222 |
Q |
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| T |
848 |
ccgctacgatgcaatcaggtggttcctgttccacgaa |
812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 159; Significance: 9e-85; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 8 - 226
Target Start/End: Complemental strand, 48911912 - 48911694
Alignment:
| Q |
8 |
gctgcattcatggcaatagaatgaggaagaccaggaattacaaatgaagcagattcataaagagagtgtgctttaacagattctatggcacaaattgcaa |
107 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
48911912 |
gctgcattcatggcaatagaatgaggaagatgaggaattacaaaagaagcagattcataaagagagtgtgctttaacagattccatggcacaaatagcaa |
48911813 |
T |
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| Q |
108 |
acagagagaaaccgttgaaactgagtctaggaatttgaagcttgtttgcaagttcatcaacccaaggaaacaagaaatccgccacaatgcaatccggtgg |
207 |
Q |
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| T |
48911812 |
acagagagaaaccgttgaaagcaagtctaggaatttgtagcttgtttgcaagttcatgaacccaaggatacatgaaatcagccacgatgcaatctggtgg |
48911713 |
T |
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| Q |
208 |
gtgctgctccacgaagtgt |
226 |
Q |
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| T |
48911712 |
gtgctgctccacgaagtgt |
48911694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 86 - 222
Target Start/End: Original strand, 48951927 - 48952063
Alignment:
| Q |
86 |
gattctatggcacaaattgcaaacagagagaaaccgttgaaactgagtctaggaatttgaagcttgtttgcaagttcatcaacccaaggaaacaagaaat |
185 |
Q |
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||||| |||||||| || | ||| || |||||||||||||| || ||| ||||| || ||||| ||||| || |||||| |||| || || || |||| |
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| T |
48951927 |
gattccatggcacatatggtaaagagtgagaaaccgttgaacacgaatctcggaatgtgcagcttctttgctagctcatcagcccacgggaataaaaaat |
48952026 |
T |
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| Q |
186 |
ccgccacaatgcaatccggtgggtgctgctccacgaa |
222 |
Q |
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| T |
48952027 |
ccgccacgatgcaatcaggtgggtgctgctccacgaa |
48952063 |
T |
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