View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_high_183 (Length: 242)
Name: NF11745_high_183
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_high_183 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 242
Target Start/End: Complemental strand, 31192947 - 31192722
Alignment:
| Q |
17 |
aaaattcacatggagggtggaagacaaagagaagatttcattgaacactcaaaggaagattcatttgcagcacgagtctcatttttctagaagaagggtg |
116 |
Q |
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| T |
31192947 |
aaaattcacttggagggtggaagacaaagagaagatttcattgaacactcaaaggaagattcatttgcagcacgagtctcatttttctagaagaagagcg |
31192848 |
T |
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| Q |
117 |
agcataaattccaccatcttactgaggggaaagggaaaattagaggagttttaaaacaattgccttgtaatgggatattttgtaatgttttcatttttga |
216 |
Q |
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| T |
31192847 |
agcataaattccaccatcttactgaggggaaagggaaaattagaggagttttaaaacaattgcctcgttatgggatattttgtaatgttttcatttttga |
31192748 |
T |
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| Q |
217 |
gtcatgtaattcactacaaaggcatg |
242 |
Q |
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| T |
31192747 |
gtcatgtaattcactgcaaaggcatg |
31192722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 147
Target Start/End: Complemental strand, 34390130 - 34390078
Alignment:
| Q |
95 |
tcatttttctagaagaagggtgagcataaattccaccatcttactgaggggaa |
147 |
Q |
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| T |
34390130 |
tcattgttctataagaagggagagcataaattacaacatcttactgaggggaa |
34390078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 2980671 - 2980710
Alignment:
| Q |
187 |
tgggatattttgtaatgttttcatttttgagtcatgtaatt |
227 |
Q |
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| T |
2980671 |
tgggatattttgtaatgttttc-tttttgagtcatgtaatt |
2980710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 21448760 - 21448799
Alignment:
| Q |
188 |
gggatattttgtaatgttttcatttttgagtcatgtaattc |
228 |
Q |
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| T |
21448760 |
gggacattttgtaatgttttca-ttttgagtcatgtaattc |
21448799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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