View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11745_high_19 (Length: 561)

Name: NF11745_high_19
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11745_high_19
NF11745_high_19
[»] chr1 (11 HSPs)
chr1 (182-534)||(26000562-26000918)
chr1 (1-151)||(26000922-26001071)
chr1 (183-287)||(44761560-44761664)
chr1 (245-289)||(9379279-9379323)
chr1 (254-290)||(10495894-10495930)
chr1 (254-290)||(15699178-15699214)
chr1 (254-290)||(29074940-29074976)
chr1 (254-290)||(32826017-32826053)
chr1 (254-290)||(40144873-40144909)
chr1 (254-290)||(45331397-45331433)
chr1 (254-290)||(49224012-49224048)
[»] chr4 (13 HSPs)
chr4 (200-290)||(38502511-38502601)
chr4 (200-290)||(53412110-53412200)
chr4 (250-288)||(54202251-54202289)
chr4 (185-290)||(6609748-6609853)
chr4 (245-290)||(26147644-26147689)
chr4 (245-290)||(32469977-32470022)
chr4 (245-290)||(42616932-42616977)
chr4 (241-290)||(54506831-54506880)
chr4 (254-290)||(3689618-3689654)
chr4 (254-290)||(11907628-11907664)
chr4 (254-290)||(17114496-17114532)
chr4 (254-290)||(47773048-47773084)
chr4 (254-290)||(52859828-52859864)
[»] chr3 (8 HSPs)
chr3 (214-290)||(54477482-54477558)
chr3 (234-290)||(29595750-29595806)
chr3 (200-290)||(52290895-52290985)
chr3 (245-290)||(45710897-45710942)
chr3 (204-277)||(48541036-48541109)
chr3 (245-290)||(54726532-54726577)
chr3 (254-290)||(29023989-29024025)
chr3 (254-290)||(37497548-37497584)
[»] chr5 (1 HSPs)
chr5 (219-286)||(18890580-18890647)
[»] chr7 (10 HSPs)
chr7 (245-290)||(18710131-18710176)
chr7 (200-290)||(32346082-32346172)
chr7 (245-290)||(83439-83484)
chr7 (245-290)||(17610568-17610613)
chr7 (254-290)||(3178234-3178270)
chr7 (254-290)||(21760014-21760050)
chr7 (254-290)||(27921051-27921087)
chr7 (254-290)||(38391811-38391847)
chr7 (254-290)||(42935724-42935760)
chr7 (254-290)||(43873986-43874022)
[»] chr8 (8 HSPs)
chr8 (254-290)||(2767315-2767351)
chr8 (234-277)||(30381771-30381814)
chr8 (200-290)||(31271023-31271113)
chr8 (214-287)||(4924094-4924167)
chr8 (254-290)||(5053177-5053213)
chr8 (254-290)||(13335272-13335308)
chr8 (254-290)||(22771859-22771895)
chr8 (254-290)||(36967417-36967453)
[»] chr2 (3 HSPs)
chr2 (200-278)||(17346395-17346473)
chr2 (254-290)||(16463745-16463781)
chr2 (245-277)||(41220980-41221012)
[»] chr6 (2 HSPs)
chr6 (250-290)||(4582003-4582043)
chr6 (254-290)||(6801987-6802023)


Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-137; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 182 - 534
Target Start/End: Complemental strand, 26000918 - 26000562
Alignment:
Q  182 tttattattatattcgtgtttattgaattttgttcaacttaactattctatcaattatgattgataaaaatattttaataaatgataataattttaccat 281  Q
    ||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  26000918 tttattattatattcgtatttattgaatttcgttcaatttaactattctatcaattatgattgataaaaatattttagtaaatgataataattttaccat 26000819  T
Q  282 caaaatcaagaatatgtatgagttgataaaaaa-tataaacaaaaagtcttgacggaaaatatttaagcgactaaaacttttgatataaagactaaaaac 380  Q
    ||||||||||||| | |||||  |||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  26000818 caaaatcaagaatgtatatgaaatgataaaaaaatataaacaaaaaatcttgacggaaaatatttaagcgaccaaaacttttgatataaagactaaaaac 26000719  T
Q  381 gaattttaagatatttatgaaatgtagtatgaaatgttgttgggtgttatggatgagagcaatgtcttgga---nnnnnnnnnggatggttcgtgatttt 477  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||            |||||||||||||||||    
T  26000718 gaattttgagatatttatgaaatgtagtatgaaatattgttgggtgttatggatgagagcaatgtcttggatattttttttttggatggttcgtgatttt 26000619  T
Q  478 agggaggttcacactaatgttccgattcgattgcgtctattctataatagaaattac 534  Q
    |||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||    
T  26000618 agggaggttcacactaatgttccggttcgattgcgtttattctgtaatagaaattac 26000562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 26001071 - 26000922
Alignment:
Q  1 agtatgaaatgcttatgctgcacaacgggataaagaagtgttgaaatgaaaatataggtagtgctggcgtattaagactctatcttgctcgacaattatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26001071 agtatgaaatgcttatgctgcacaacgggataaagaagtgttgaaatgaaaatataggtagtgctggcgtatt-agactctatcttgctcgacaattatt 26000973  T
Q  101 gttttgattatatatatttcttacatctcattttaaatgtctcgtaaataa 151  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  26000972 gttttgattatatatatttcttacatctcattttaaatgtctcctaaataa 26000922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 287
Target Start/End: Complemental strand, 44761664 - 44761560
Alignment:
Q  183 ttattattatattcgtgtttattgaattttgttcaacttaactattctatcaattatgattgataaaaatattttaataaatgataataattttaccatc 282  Q
    |||||||||||  | | ||||||||||||  ||||||||||| |||| |  || ||| ||| ||||| |||||||| ||||||||| |||||||| |||     
T  44761664 ttattattatacccttatttattgaatttcattcaacttaaccattccactaactataattaataaagatattttagtaaatgatattaattttatcatt 44761565  T
Q  283 aaaat 287  Q
    |||||    
T  44761564 aaaat 44761560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 245 - 289
Target Start/End: Original strand, 9379279 - 9379323
Alignment:
Q  245 ataaaaatattttaataaatgataataattttaccatcaaaatca 289  Q
    ||||| |||||||||||||||||| |||||||| ||| |||||||    
T  9379279 ataaatatattttaataaatgatattaattttatcattaaaatca 9379323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 10495894 - 10495930
Alignment:
Q  254 ttttaataaatgataataattttaccatcaaaatcaa 290  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  10495894 ttttagtaaatgatactaattttaccatcaaaatcaa 10495930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 15699178 - 15699214
Alignment:
Q  254 ttttaataaatgataataattttaccatcaaaatcaa 290  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  15699178 ttttagtaaatgatattaattttaccatcaaaatcaa 15699214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 29074940 - 29074976
Alignment:
Q  254 ttttaataaatgataataattttaccatcaaaatcaa 290  Q
    ||||||||||||||| |||||||||||| ||||||||    
T  29074940 ttttaataaatgatattaattttaccattaaaatcaa 29074976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 32826053 - 32826017
Alignment:
Q  254 ttttaataaatgataataattttaccatcaaaatcaa 290  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  32826053 ttttagtaaatgatactaattttaccatcaaaatcaa 32826017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 40144909 - 40144873
Alignment:
Q  254 ttttaataaatgataataattttaccatcaaaatcaa 290  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  40144909 ttttagtaaatgatattaattttaccatcaaaatcaa 40144873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 45331397 - 45331433
Alignment:
Q  254 ttttaataaatgataataattttaccatcaaaatcaa 290  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  45331397 ttttagtaaatgatattaattttaccatcaaaatcaa 45331433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 49224048 - 49224012
Alignment:
Q  254 ttttaataaatgataataattttaccatcaaaatcaa 290  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  49224048 ttttagtaaatgatactaattttaccatcaaaatcaa 49224012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 200 - 290
Target Start/End: Complemental strand, 38502601 - 38502511
Alignment:
Q  200 tttattgaattttgttcaacttaactattctatcaattatgattgataaaaatattttaataaatgataataattttaccatcaaaatcaa 290  Q
    ||||||||||||| | ||||||||||| |  || || ||| ||| |||||| ||||||||||||||||| |||||||||||||||||||||    
T  38502601 tttattgaattttatccaacttaactactacattaactataattaataaaagtattttaataaatgatactaattttaccatcaaaatcaa 38502511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 200 - 290
Target Start/End: Original strand, 53412110 - 53412200
Alignment:
Q  200 tttattgaattttgttcaacttaactattctatcaattatgattgataaaaatattttaataaatgataataattttaccatcaaaatcaa 290  Q
    ||||||||||||  | |||||||||||||| |  || ||| ||| |||||||||||||| ||||||||| ||||||||||||  |||||||    
T  53412110 tttattgaatttcatccaacttaactattccacaaactataattaataaaaatattttagtaaatgatactaattttaccattgaaatcaa 53412200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 250 - 288
Target Start/End: Original strand, 54202251 - 54202289
Alignment:
Q  250 aatattttaataaatgataataattttaccatcaaaatc 288  Q
    ||||||||||||||||||| |||||||||||| ||||||    
T  54202251 aatattttaataaatgatattaattttaccattaaaatc 54202289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 290
Target Start/End: Original strand, 6609748 - 6609853
Alignment:
Q  185 attattatattcgtgtttattgaattttgttcaacttaactattctatcaattatgattgataaaaatattttaataaatgataataattttaccatcaa 284  Q
    ||||||||| || | |||||||| |||  | ||||||||||| || |  |||||  ||| ||||| || ||||  ||||||||| |||||||||||||||    
T  6609748 attattatactcttatttattgagtttcatccaacttaactactccaataattacaattaataaagatgtttttgtaaatgatactaattttaccatcaa 6609847  T
Q  285 aatcaa 290  Q
    ||||||    
T  6609848 aatcaa 6609853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 290
Target Start/End: Complemental strand, 26147689 - 26147644
Alignment:
Q  245 ataaaaatattttaataaatgataataattttaccatcaaaatcaa 290  Q
    |||| ||| ||||| ||||||||| |||||||||||||||||||||    
T  26147689 ataagaatgttttagtaaatgatactaattttaccatcaaaatcaa 26147644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 290
Target Start/End: Complemental strand, 32470022 - 32469977
Alignment:
Q  245 ataaaaatattttaataaatgataataattttaccatcaaaatcaa 290  Q
    |||| ||| ||||||||||||||| |||||||||||| ||||||||    
T  32470022 ataagaatgttttaataaatgatactaattttaccattaaaatcaa 32469977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 290
Target Start/End: Complemental strand, 42616977 - 42616932
Alignment:
Q  245 ataaaaatattttaataaatgataataattttaccatcaaaatcaa 290  Q
    |||||||||||||| ||||||||| ||||||||||||  |||||||    
T  42616977 ataaaaatattttagtaaatgatattaattttaccattgaaatcaa 42616932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 290
Target Start/End: Original strand, 54506831 - 54506880
Alignment:
Q  241 attgataaaaatattttaataaatgataataattttaccatcaaaatcaa 290  Q
    ||||||||  |||||||||||||||||| ||||||||||||  |||||||    
T  54506831 attgataatgatattttaataaatgatattaattttaccattgaaatcaa 54506880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 3689618 - 3689654
Alignment:
Q  254 ttttaataaatgataataattttaccatcaaaatcaa 290  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  3689618 ttttagtaaatgatactaattttaccatcaaaatcaa 3689654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 11907664 - 11907628
Alignment:
Q  254 ttttaataaatgataataattttaccatcaaaatcaa 290  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  11907664 ttttagtaaatgatactaattttaccatcaaaatcaa 11907628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 17114496 - 17114532
Alignment:
Q  254 ttttaataaatgataataattttaccatcaaaatcaa 290  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  17114496 ttttagtaaatgatactaattttaccatcaaaatcaa 17114532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 47773084 - 47773048
Alignment:
Q  254 ttttaataaatgataataattttaccatcaaaatcaa 290  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  47773084 ttttagtaaatgatactaattttaccatcaaaatcaa 47773048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 52859864 - 52859828
Alignment:
Q  254 ttttaataaatgataataattttaccatcaaaatcaa 290  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  52859864 ttttagtaaatgatactaattttaccatcaaaatcaa 52859828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 214 - 290
Target Start/End: Complemental strand, 54477558 - 54477482
Alignment:
Q  214 ttcaacttaactattctatcaattatgattgataaaaatattttaataaatgataataattttaccatcaaaatcaa 290  Q
    ||||||||||||| || || || ||  ||| |||||||||||||| ||||||||| |||||||||||| ||||||||    
T  54477558 ttcaacttaactactccattaactacaattaataaaaatattttagtaaatgatattaattttaccattaaaatcaa 54477482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 290
Target Start/End: Complemental strand, 29595806 - 29595750
Alignment:
Q  234 aattatgattgataaaaatattttaataaatgataataattttaccatcaaaatcaa 290  Q
    |||||| ||| |||||||||||||||||||| ||| ||||||||| || ||||||||    
T  29595806 aattataattaataaaaatattttaataaataatattaattttactattaaaatcaa 29595750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 200 - 290
Target Start/End: Original strand, 52290895 - 52290985
Alignment:
Q  200 tttattgaattttgttcaacttaactattctatcaattatgattgataaaaatattttaataaatgataataattttaccatcaaaatcaa 290  Q
    ||||||||| ||| ||||||||||||| || |  || ||| ||| ||||   | |||||||||||| || |||||||||||||||||||||    
T  52290895 tttattgaactttattcaacttaactactccactaactataattaataaggctgttttaataaatggtactaattttaccatcaaaatcaa 52290985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 290
Target Start/End: Original strand, 45710897 - 45710942
Alignment:
Q  245 ataaaaatattttaataaatgataataattttaccatcaaaatcaa 290  Q
    |||||| | ||||| ||||||||| |||||||||||||||||||||    
T  45710897 ataaaagtgttttagtaaatgatattaattttaccatcaaaatcaa 45710942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 277
Target Start/End: Complemental strand, 48541109 - 48541036
Alignment:
Q  204 ttgaattttgttcaacttaactattctatcaattatgattgataaaaatattttaataaatgataataatttta 277  Q
    ||||||||  ||||||||||||| || |  |||||  ||| |||| ||||||||||||||||||| ||||||||    
T  48541109 ttgaatttcattcaacttaactactcaactaattacaattaataagaatattttaataaatgatattaatttta 48541036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 290
Target Start/End: Original strand, 54726532 - 54726577
Alignment:
Q  245 ataaaaatattttaataaatgataataattttaccatcaaaatcaa 290  Q
    ||||| || ||||| ||||||||| |||||||||||||||||||||    
T  54726532 ataaagatgttttagtaaatgatattaattttaccatcaaaatcaa 54726577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 29024025 - 29023989
Alignment:
Q  254 ttttaataaatgataataattttaccatcaaaatcaa 290  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  29024025 ttttagtaaatgatactaattttaccatcaaaatcaa 29023989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 37497548 - 37497584
Alignment:
Q  254 ttttaataaatgataataattttaccatcaaaatcaa 290  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  37497548 ttttagtaaatgatactaattttaccatcaaaatcaa 37497584  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 219 - 286
Target Start/End: Complemental strand, 18890647 - 18890580
Alignment:
Q  219 cttaactattctatcaattatgattgataaaaatattttaataaatgataataattttaccatcaaaa 286  Q
    |||||||| || | ||||||  ||| |||||||||||||||||||||||| |||||||||||| ||||    
T  18890647 cttaactactccaacaattaaaattaataaaaatattttaataaatgatactaattttaccattaaaa 18890580  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 245 - 290
Target Start/End: Complemental strand, 18710176 - 18710131
Alignment:
Q  245 ataaaaatattttaataaatgataataattttaccatcaaaatcaa 290  Q
    |||||||||| ||||||||| |||||||||||||||| ||||||||    
T  18710176 ataaaaatatgttaataaattataataattttaccattaaaatcaa 18710131  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 200 - 290
Target Start/End: Complemental strand, 32346172 - 32346082
Alignment:
Q  200 tttattgaattttgttcaacttaactattctatcaattatgattgataaaaatattttaataaatgataataattttaccatcaaaatcaa 290  Q
    ||||||||||||  ||||||||||||| || |  |||||| ||| |||| | ||||||| || |||||| ||||||||||||  |||||||    
T  32346172 tttattgaatttcattcaacttaactactccactaattataattaataagagtattttagtagatgatattaattttaccattgaaatcaa 32346082  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 290
Target Start/End: Original strand, 83439 - 83484
Alignment:
Q  245 ataaaaatattttaataaatgataataattttaccatcaaaatcaa 290  Q
    |||| ||| ||||| ||||||||| |||||||||||||||||||||    
T  83439 ataagaatgttttagtaaatgatactaattttaccatcaaaatcaa 83484  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 290
Target Start/End: Complemental strand, 17610613 - 17610568
Alignment:
Q  245 ataaaaatattttaataaatgataataattttaccatcaaaatcaa 290  Q
    |||| ||||||||||||||| ||| |||||||||||| ||||||||    
T  17610613 ataagaatattttaataaattatactaattttaccattaaaatcaa 17610568  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 3178270 - 3178234
Alignment:
Q  254 ttttaataaatgataataattttaccatcaaaatcaa 290  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  3178270 ttttagtaaatgatattaattttaccatcaaaatcaa 3178234  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 21760050 - 21760014
Alignment:
Q  254 ttttaataaatgataataattttaccatcaaaatcaa 290  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  21760050 ttttattaaatgatactaattttaccatcaaaatcaa 21760014  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 27921051 - 27921087
Alignment:
Q  254 ttttaataaatgataataattttaccatcaaaatcaa 290  Q
    ||||||||||||||| |||||||||||| ||||||||    
T  27921051 ttttaataaatgatactaattttaccattaaaatcaa 27921087  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 38391811 - 38391847
Alignment:
Q  254 ttttaataaatgataataattttaccatcaaaatcaa 290  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  38391811 ttttagtaaatgatactaattttaccatcaaaatcaa 38391847  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 42935724 - 42935760
Alignment:
Q  254 ttttaataaatgataataattttaccatcaaaatcaa 290  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  42935724 ttttagtaaatgatattaattttaccatcaaaatcaa 42935760  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 43873986 - 43874022
Alignment:
Q  254 ttttaataaatgataataattttaccatcaaaatcaa 290  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  43873986 ttttagtaaatgatattaattttaccatcaaaatcaa 43874022  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 2767351 - 2767315
Alignment:
Q  254 ttttaataaatgataataattttaccatcaaaatcaa 290  Q
    ||||||||||||||| |||||||||||||||||||||    
T  2767351 ttttaataaatgatactaattttaccatcaaaatcaa 2767315  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 277
Target Start/End: Original strand, 30381771 - 30381814
Alignment:
Q  234 aattatgattgataaaaatattttaataaatgataataatttta 277  Q
    |||||| ||| |||||||||||||||||||| ||||||||||||    
T  30381771 aattataattaataaaaatattttaataaataataataatttta 30381814  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 200 - 290
Target Start/End: Original strand, 31271023 - 31271113
Alignment:
Q  200 tttattgaattttgttcaacttaactattctatcaattatgattgataaaaatattttaataaatgataataattttaccatcaaaatcaa 290  Q
    ||||||||||||| | ||||||||||| || |  || ||| ||| |||| | ||||||| || |||||| |||||||||||| ||||||||    
T  31271023 tttattgaattttatccaacttaactactccactaactataattaataagagtattttagtatatgatattaattttaccattaaaatcaa 31271113  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 287
Target Start/End: Complemental strand, 4924167 - 4924094
Alignment:
Q  214 ttcaacttaactattctatcaattatgattgataaaaatattttaataaatgataataattttaccatcaaaat 287  Q
    ||||||||||||| ||||| || ||  ||| ||||| |||||||| ||||| ||| |||||||||||| |||||    
T  4924167 ttcaacttaactactctattaactacaattaataaagatattttagtaaataatactaattttaccattaaaat 4924094  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 5053213 - 5053177
Alignment:
Q  254 ttttaataaatgataataattttaccatcaaaatcaa 290  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  5053213 ttttagtaaatgatattaattttaccatcaaaatcaa 5053177  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 13335272 - 13335308
Alignment:
Q  254 ttttaataaatgataataattttaccatcaaaatcaa 290  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  13335272 ttttactaaatgatactaattttaccatcaaaatcaa 13335308  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 22771895 - 22771859
Alignment:
Q  254 ttttaataaatgataataattttaccatcaaaatcaa 290  Q
    ||||||||||||| | |||||||||||||||||||||    
T  22771895 ttttaataaatgacactaattttaccatcaaaatcaa 22771859  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 36967417 - 36967453
Alignment:
Q  254 ttttaataaatgataataattttaccatcaaaatcaa 290  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  36967417 ttttagtaaatgatattaattttaccatcaaaatcaa 36967453  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 200 - 278
Target Start/End: Complemental strand, 17346473 - 17346395
Alignment:
Q  200 tttattgaattttgttcaacttaactattctatcaattatgattgataaaaatattttaataaatgataataattttac 278  Q
    ||||||||||||  | ||||||||||| || |  || ||  ||| |||||||||||||||||||||||| |||||||||    
T  17346473 tttattgaatttcttccaacttaactactccactaactacaattaataaaaatattttaataaatgatattaattttac 17346395  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 16463745 - 16463781
Alignment:
Q  254 ttttaataaatgataataattttaccatcaaaatcaa 290  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  16463745 ttttagtaaatgatactaattttaccatcaaaatcaa 16463781  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 245 - 277
Target Start/End: Complemental strand, 41221012 - 41220980
Alignment:
Q  245 ataaaaatattttaataaatgataataatttta 277  Q
    |||||||||||||||||||||||| ||||||||    
T  41221012 ataaaaatattttaataaatgatactaatttta 41220980  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 290
Target Start/End: Complemental strand, 4582043 - 4582003
Alignment:
Q  250 aatattttaataaatgataataattttaccatcaaaatcaa 290  Q
    ||||||||| ||||||||| |||||||||||| ||||||||    
T  4582043 aatattttagtaaatgatattaattttaccattaaaatcaa 4582003  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 6801987 - 6802023
Alignment:
Q  254 ttttaataaatgataataattttaccatcaaaatcaa 290  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  6801987 ttttagtaaatgatattaattttaccatcaaaatcaa 6802023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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