View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11745_high_192 (Length: 240)

Name: NF11745_high_192
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11745_high_192
NF11745_high_192
[»] chr7 (11 HSPs)
chr7 (1-226)||(7328050-7328275)
chr7 (1-226)||(7311183-7311408)
chr7 (23-149)||(35205919-35206045)
chr7 (23-145)||(21210476-21210598)
chr7 (29-151)||(21218709-21218831)
chr7 (9-151)||(20414826-20414971)
chr7 (27-98)||(13888093-13888164)
chr7 (51-151)||(20456449-20456552)
chr7 (66-126)||(36260225-36260285)
chr7 (83-154)||(22473213-22473284)
chr7 (28-126)||(36263025-36263123)
[»] scaffold0064 (1 HSPs)
scaffold0064 (11-97)||(24206-24292)
[»] scaffold0128 (3 HSPs)
scaffold0128 (43-118)||(4117-4192)
scaffold0128 (26-154)||(25562-25690)
scaffold0128 (25-154)||(8513-8642)
[»] chr5 (1 HSPs)
chr5 (43-118)||(42298091-42298166)
[»] chr1 (1 HSPs)
chr1 (62-118)||(31443005-31443061)
[»] chr2 (1 HSPs)
chr2 (33-99)||(20980603-20980669)


Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-125; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 7328275 - 7328050
Alignment:
Q  1 tgaatttaaattcacttgaaggttgtgatagctaaatgtaaagaatttagtccaagacctgtcatctccaaattctgtcatcttccatataacaaaatct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7328275 tgaatttaaattcacttgaaggttgtgatagctaaatgtaaagaatttagtccaagacctgtcatctccaaattctgtcatcttccatataacaaaatct 7328176  T
Q  101 gttttgttgaaatcatgagaaaagcataaggagttcatcaacacacaaacatttgatgaatgtgtcgactcctcagcaccaggagggagcatcaactttg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7328175 gttttgttgaaatcatgagaaaagcataaggagttcatcaacacacaaacatttgatgaatgtgtcgactcctcagcaccaggagggagcatcaactttg 7328076  T
Q  201 tgtatgtctcggtccctagatgtagt 226  Q
    ||||||||||||||||||||||||||    
T  7328075 tgtatgtctcggtccctagatgtagt 7328050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 7311183 - 7311408
Alignment:
Q  1 tgaatttaaattcacttgaaggttgtgatagctaaatgtaaagaatttagtccaagacctgtcatctccaaattctgtcatcttccatataacaaaatct 100  Q
    |||||||||||||| | |||| |||||||||||||||||||| || | ||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  7311183 tgaatttaaattcattcgaagattgtgatagctaaatgtaaataactgagtccaagaccggtcgtctccaaattctgtcatcttccatataacaaaatct 7311282  T
Q  101 gttttgttgaaatcatgagaaaagcataaggagttcatcaacacacaaacatttgatgaatgtgtcgactcctcagcaccaggagggagcatcaactttg 200  Q
    |||  ||||||||| ||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||  |||||||  |||||||||||||||||||    
T  7311283 gttccgttgaaatcttgagaaaagcagaaggagttcatcaacacacaaacacttgataaatgtgtcgacttgtcagcacttggagggagcatcaactttg 7311382  T
Q  201 tgtatgtctcggtccctagatgtagt 226  Q
    |||||||||| ||||||| |||||||    
T  7311383 tgtatgtctcagtccctatatgtagt 7311408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 23 - 149
Target Start/End: Original strand, 35205919 - 35206045
Alignment:
Q  23 ttgtgatagctaaatgtaaagaatttagtccaagacctgtcatctccaaattctgtcatcttccatataacaaaatctgttttgttgaaatcatgagaaa 122  Q
    ||||||||||||||| ||| ||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||| |||   |||||||||||| |||    
T  35205919 ttgtgatagctaaatttaaggaattgagtccaagacttgtcatttccaaattctgtcatcttccatataacaaaatcagttccattgaaatcatgataaa 35206018  T
Q  123 agcataaggagttcatcaacacacaaa 149  Q
    | || ||||||||| ||| ||||||||    
T  35206019 aacaaaaggagttcctcagcacacaaa 35206045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 23 - 145
Target Start/End: Original strand, 21210476 - 21210598
Alignment:
Q  23 ttgtgatagctaaatgtaaagaatttagtccaagacctgtcatctccaaattctgtcatcttccatataacaaaatctgttttgttgaaatcatgagaaa 122  Q
    ||||||||||||||| ||| ||||  |||||||||| ||||||||||||| | |||||||||||||||||||||||| |||  ||||||||||||| |||    
T  21210476 ttgtgatagctaaatttaaggaatagagtccaagacttgtcatctccaaactttgtcatcttccatataacaaaatcagttccgttgaaatcatgataaa 21210575  T
Q  123 agcataaggagttcatcaacaca 145  Q
     ||||||| ||||| | ||||||    
T  21210576 ggcataagaagttcctaaacaca 21210598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 29 - 151
Target Start/End: Original strand, 21218709 - 21218831
Alignment:
Q  29 tagctaaatgtaaagaatttagtccaagacctgtcatctccaaattctgtcatcttccatataacaaaatctgttttgttgaaatcatgagaaaagcata 128  Q
    ||||||||| | | ||||| |||||||||| | |||||||||||||| ||||| | ||||||||| ||||| |||   |||||||| ||| |||| || |    
T  21218709 tagctaaatttgaggaattgagtccaagacttatcatctccaaattccgtcatttgccatataaccaaatcagttccattgaaatcgtgataaaaacaaa 21218808  T
Q  129 aggagttcatcaacacacaaaca 151  Q
    |||||||||||||||||||||||    
T  21218809 aggagttcatcaacacacaaaca 21218831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 151
Target Start/End: Complemental strand, 20414971 - 20414826
Alignment:
Q  9 aattcacttgaaggttgtgatagctaaatgtaaagaatttagtccaagacctgtcatctccaaattctgtcatcttccatataacaaaatctgtt---tt 105  Q
    |||||||| ||||||| | || | ||||| ||| ||||| |||||||||| |||||||||||||||   ||||||||||||||| |||||| |||   ||    
T  20414971 aattcactcgaaggttatcattgttaaatttaaggaattgagtccaagacttgtcatctccaaatttcatcatcttccatataataaaatcggttccgtt 20414872  T
Q  106 gttgaaatcatgagaaaagcataaggagttcatcaacacacaaaca 151  Q
    | | | || |||| |||| || ||||||||||| ||||||||||||    
T  20414871 gatcatattatgataaaaacaaaaggagttcatgaacacacaaaca 20414826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 27 - 98
Target Start/End: Original strand, 13888093 - 13888164
Alignment:
Q  27 gatagctaaatgtaaagaatttagtccaagacctgtcatctccaaattctgtcatcttccatataacaaaat 98  Q
    ||||||||||| ||| ||||| |||||||||| | || |||||||||| |||||| ||||||||||||||||    
T  13888093 gatagctaaatttaaggaattgagtccaagacttttcgtctccaaattttgtcattttccatataacaaaat 13888164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 151
Target Start/End: Complemental strand, 20456552 - 20456449
Alignment:
Q  51 tccaagacctgtcatctccaaattctgtcatcttccatataacaaaatctgttttgttga---aatcatgagaaaagcataaggagttcatcaacacaca 147  Q
    |||||||| ||||||| ||||||| |||||||||||||||||||||||  |||  |||||     | |||| |||| || ||||||||||||||||||||    
T  20456552 tccaagacttgtcatccccaaattttgtcatcttccatataacaaaattggttccgttgatcgtgttatgataaaaacaaaaggagttcatcaacacaca 20456453  T
Q  148 aaca 151  Q
    ||||    
T  20456452 aaca 20456449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 66 - 126
Target Start/End: Complemental strand, 36260285 - 36260225
Alignment:
Q  66 ctccaaattctgtcatcttccatataacaaaatctgttttgttgaaatcatgagaaaagca 126  Q
    |||||||||||  ||||||||||||||||||||| ||||| ||| |||||| |||||||||    
T  36260285 ctccaaattcttccatcttccatataacaaaatcagttttcttgtaatcattagaaaagca 36260225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 154
Target Start/End: Original strand, 22473213 - 22473284
Alignment:
Q  83 ttccatataacaaaatctgttttgttgaaatcatgagaaaagcataaggagttcatcaacacacaaacattt 154  Q
    ||||||||||||||||| ||||  || ||||||||| |||  || | |||||||||||| ||||||||||||    
T  22473213 ttccatataacaaaatcagtttcttttaaatcatgataaacacacagggagttcatcaatacacaaacattt 22473284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 126
Target Start/End: Complemental strand, 36263123 - 36263025
Alignment:
Q  28 atagctaaatgtaaagaatttagtccaagacctgtcatctccaaattctgtcatcttccatataacaaaatctgttttgttgaaatcatgagaaaagca 126  Q
    |||||||| | ||| || || ||||||||||   ||| |||||||||||  ||||||||||||||||||||| ||||| ||  | |||| |||||||||    
T  36263123 atagctaactttaatgagttgagtccaagactcttcaactccaaattcttccatcttccatataacaaaatcagttttcttatagtcattagaaaagca 36263025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 11 - 97
Target Start/End: Complemental strand, 24292 - 24206
Alignment:
Q  11 ttcacttgaaggttgtgatagctaaatgtaaagaatttagtccaagacctgtcatctccaaattctgtcatcttccatataacaaaa 97  Q
    |||| |||||| | ||||||||||||| ||| ||||| ||| |||||| | ||||||||| ||||||||||||||||||||||||||    
T  24292 ttcatttgaagatcgtgatagctaaatttaaggaattgagttcaagacttttcatctccatattctgtcatcttccatataacaaaa 24206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 43 - 118
Target Start/End: Complemental strand, 4192 - 4117
Alignment:
Q  43 gaatttagtccaagacctgtcatctccaaattctgtcatcttccatataacaaaatctgttttgttgaaatcatga 118  Q
    ||||| |||||||||  | |||| ||||||||||||||||||||||||||| ||||| || || ||||||||||||    
T  4192 gaattgagtccaagaattttcatttccaaattctgtcatcttccatataaccaaatcggtcttcttgaaatcatga 4117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 154
Target Start/End: Complemental strand, 25690 - 25562
Alignment:
Q  26 tgatagctaaatgtaaagaatttagtccaagacctgtcatctccaaattctgtcatcttccatataacaaaatctgttttgttgaaatcatgagaaaagc 125  Q
    |||||| ||||| ||| |||||  ||||||||  |  ||| |||||||||  |||  ||||||||||||||||| ||||  || ||||| ||| |||  |    
T  25690 tgataggtaaatttaaggaattgggtccaagaatttacatttccaaattccatcaatttccatataacaaaatcagtttcctttaaatcgtgataaacac 25591  T
Q  126 ataaggagttcatcaacacacaaacattt 154  Q
    ||| |||||||||||||||||||||||||    
T  25590 atagggagttcatcaacacacaaacattt 25562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 154
Target Start/End: Complemental strand, 8642 - 8513
Alignment:
Q  25 gtgatagctaaatgtaaagaatttagtccaagacctgtcatctccaaattctgtcatcttccatataacaaaatctgttttgttgaaatcatgagaaaag 124  Q
    |||||||||||||  || |||||   |||||||  | |||| |||||||||  |||  ||||||||||||||||| ||||  || ||||| ||| |||      
T  8642 gtgatagctaaatcgaaggaattggatccaagaattttcatttccaaattccatcaatttccatataacaaaatcagtttcctttaaatcttgataaaca 8543  T
Q  125 cataaggagttcatcaacacacaaacattt 154  Q
    |||| ||||||||| |||||||||||||||    
T  8542 catagggagttcattaacacacaaacattt 8513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 118
Target Start/End: Complemental strand, 42298166 - 42298091
Alignment:
Q  43 gaatttagtccaagacctgtcatctccaaattctgtcatcttccatataacaaaatctgttttgttgaaatcatga 118  Q
    ||||| |||||||||  | ||||||||||||||| |||||||||||||||| ||||| || || ||||||| ||||    
T  42298166 gaattgagtccaagaattttcatctccaaattctatcatcttccatataactaaatcagtattcttgaaattatga 42298091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 118
Target Start/End: Original strand, 31443005 - 31443061
Alignment:
Q  62 tcatctccaaattctgtcatcttccatataacaaaatctgttttgttgaaatcatga 118  Q
    ||||||||||||| |||||||||||||||||| ||||| ||||  || |||||||||    
T  31443005 tcatctccaaattttgtcatcttccatataacgaaatcggtttcattcaaatcatga 31443061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 99
Target Start/End: Complemental strand, 20980669 - 20980603
Alignment:
Q  33 taaatgtaaagaatttagtccaagacctgtcatctccaaattctgtcatcttccatataacaaaatc 99  Q
    ||||| ||| ||| ||||||||||||   ||| ||| |||||||||||| |||||||||||||||||    
T  20980669 taaatttaaggaacttagtccaagactcttcaactctaaattctgtcattttccatataacaaaatc 20980603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University