View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_high_198 (Length: 239)
Name: NF11745_high_198
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_high_198 |
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| [»] scaffold1964 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 5 - 223
Target Start/End: Original strand, 12371379 - 12371596
Alignment:
| Q |
5 |
atgacagcattagccacattcaagttttcagcaccggagctattcacaagttgccaatcttcaaccaaagaccgagctctttcaaccactgttgcacaag |
104 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12371379 |
atgacagcattagccacattcatgttttcagcaccggagctattcacaagttgccaatcttcaaccaaagaccgagctctttcaaccactgttgcacaag |
12371478 |
T |
|
| Q |
105 |
tttccgtaacatcttcccacacctttatattcctatgtttccaaagactccaaaatattgcagccaaccgttgagaaagtgtggcagataggagtctgta |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
12371479 |
tttccgtaacatcttcccacacctttatattcctatgtttccaaagactccaaaatattgcagccaaccgttgagaaagtgtggcagata-gagactgta |
12371577 |
T |
|
| Q |
205 |
gtaaaacaaagatagcttc |
223 |
Q |
| |
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||||||||||||| ||||| |
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| T |
12371578 |
gtaaaacaaagattgcttc |
12371596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 143; Significance: 3e-75; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 5 - 223
Target Start/End: Complemental strand, 26682625 - 26682408
Alignment:
| Q |
5 |
atgacagcattagccacattcaagttttcagcaccggagctattcacaagttgccaatcttcaaccaaagaccgagctctttcaaccactgttgcacaag |
104 |
Q |
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||||||||| ||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
26682625 |
atgacagcagtagccgcattcaagttttcagcactggagctattcgcaagttgccaatcttcaaccaaagaccagactctttcaaccactgttgcgcaag |
26682526 |
T |
|
| Q |
105 |
tttccgtaacatcttcccacacctttatattcctatgtttccaaagactccaaaatattgcagccaaccgttgagaaagtgtggcagataggagtctgta |
204 |
Q |
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||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||| |||| |
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| T |
26682525 |
tttccataacatcttcctacacctttatattcctatgtttccaaagactccaaaatattgcagccaaccgttgaaaaagtgtggtggata-gagagtgta |
26682427 |
T |
|
| Q |
205 |
gtaaaacaaagatagcttc |
223 |
Q |
| |
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| ||| ||||||||||||| |
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| T |
26682426 |
gcaaagcaaagatagcttc |
26682408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 74 - 177
Target Start/End: Original strand, 29755643 - 29755746
Alignment:
| Q |
74 |
gaccgagctctttcaaccactgttgcacaagtttccgtaacatcttcccacacctttatattcctatgtttccaaagactccaaaatattgcagccaacc |
173 |
Q |
| |
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||||| ||||| || || |||||||||||||| ||||||| ||||||||||||||||| |||||||| |||||||| |||||||| ||||| |||| || |
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| T |
29755643 |
gaccgcgctctatcgacaactgttgcacaagtctccgtaatgtcttcccacacctttatgttcctatgcttccaaaggctccaaaaaattgctgccagcc |
29755742 |
T |
|
| Q |
174 |
gttg |
177 |
Q |
| |
|
|||| |
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|
| T |
29755743 |
gttg |
29755746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 170
Target Start/End: Original strand, 13949377 - 13949489
Alignment:
| Q |
58 |
ccaatcttcaaccaaagaccgagctctttcaaccactgttgcacaagtttccgtaacatcttcccacacctttatattcctatgtttccaaagactccaa |
157 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||| ||| ||||||| || | | ||||||||| || | ||||||||| ||||||| ||||||| |
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| T |
13949377 |
ccaatcttcaaccatgaacctagctctttcaaccactgtcgcataagtttctgttatgttttcccacactttgacattcctatgcttccaaatactccaa |
13949476 |
T |
|
| Q |
158 |
aatattgcagcca |
170 |
Q |
| |
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|| | |||||||| |
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| T |
13949477 |
aaaagtgcagcca |
13949489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 5 - 220
Target Start/End: Original strand, 20528926 - 20529140
Alignment:
| Q |
5 |
atgacagcattagccacattcaagttttcagcaccggagctattcacaagttgccaatcttcaaccaaagaccgagctctttcaaccactgttgcacaag |
104 |
Q |
| |
|
|||||| || ||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20528926 |
atgacaacagtagccgcattcaaggtttcagcaccagagctattcacaagttgccaatcttcaaccaaagaccgagctctttcaaccactgttgcacaag |
20529025 |
T |
|
| Q |
105 |
tttccgtaacatcttcccacacctttatattcctatgtttccaaagactccaaaatattgcagccaaccgttgagaaagtgtggcagataggagtctgta |
204 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| || ||||||| ||||| ||||||||||||||||||| ||||||||||||| ||| ||||| |
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| T |
20529026 |
tttctttaacatcttcccacacctttatattcctatgctttcaaagacatcaaaaacttgcagccaaccgttgagagagtgtggcagata-gagactgta |
20529124 |
T |
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| Q |
205 |
gtaaaacaaagatagc |
220 |
Q |
| |
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| ||| |||||||||| |
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| T |
20529125 |
gcaaagcaaagatagc |
20529140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 74 - 194
Target Start/End: Complemental strand, 42080001 - 42079881
Alignment:
| Q |
74 |
gaccgagctctttcaaccactgttgcacaagtttccgtaacatcttcccacacctttatattcctatgtttccaaagactccaaaatattgcagccaacc |
173 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||| || ||||||||||| || | ||||||||| ||||||| ||||||||| |||| ||||| || |
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|
| T |
42080001 |
gacctagctctttcaaccaccgttgcacaagtttatgttttgtcttcccacactttgacattcctatgcttccaaatactccaaaaaattgtagccatcc |
42079902 |
T |
|
| Q |
174 |
gttgagaaagtgtggcagata |
194 |
Q |
| |
|
|| ||||||||||| ||||| |
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| T |
42079901 |
tttaagaaagtgtggtagata |
42079881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 51 - 194
Target Start/End: Original strand, 2974151 - 2974294
Alignment:
| Q |
51 |
caagttgccaatcttcaaccaaagaccgagctctttcaaccactgttgcacaagtttccgtaacatcttcccacacctttatattcctatgtttccaaag |
150 |
Q |
| |
|
|||| ||||| || |||| ||| ||||| |||||||| |||||| ||||||||||||| || || |||||||||||||||| |||||||| |||||||| |
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|
| T |
2974151 |
caagatgccagtcgtcaatcaaggaccgcgctctttccaccactattgcacaagtttctgtgacgtcttcccacacctttaagttcctatgcttccaaag |
2974250 |
T |
|
| Q |
151 |
actccaaaatattgcagccaaccgttgagaaagtgtggcagata |
194 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
2974251 |
actccaaaatattgcagccagccgttgagaaagtgtggcagata |
2974294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 58 - 194
Target Start/End: Complemental strand, 14994585 - 14994449
Alignment:
| Q |
58 |
ccaatcttcaaccaaagaccgagctctttcaaccactgttgcacaagtttccgtaacatcttcccacacctttatattcctatgtttccaaagactccaa |
157 |
Q |
| |
|
||||||||| |||| |||| | ||||||||||||| || ||| ||||||| || | ||||| ||||| || | ||||||||| ||||||| ||||||| |
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|
| T |
14994585 |
ccaatcttctaccatcgacctaactctttcaaccaccgtcgcataagtttctgtgatgtcttcgcacactttgacattcctatgcttccaaatactccaa |
14994486 |
T |
|
| Q |
158 |
aatattgcagccaaccgttgagaaagtgtggcagata |
194 |
Q |
| |
|
|||| ||||| || || ||||||||||||||| |||| |
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|
| T |
14994485 |
aatagtgcagtcatcctttgagaaagtgtggcggata |
14994449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1964 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold1964
Description:
Target: scaffold1964; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 51 - 194
Target Start/End: Complemental strand, 574 - 431
Alignment:
| Q |
51 |
caagttgccaatcttcaaccaaagaccgagctctttcaaccactgttgcacaagtttccgtaacatcttcccacacctttatattcctatgtttccaaag |
150 |
Q |
| |
|
|||| |||||||| |||| ||| |||| |||||||| |||||| |||| ||||||||||| || |||| ||||||||||| |||||||| |||||||| |
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|
| T |
574 |
caagatgccaatcgtcaatcaaggaccacgctctttccaccactattgctcaagtttccgtgacgtcttgccacacctttaagttcctatgcttccaaag |
475 |
T |
|
| Q |
151 |
actccaaaatattgcagccaaccgttgagaaagtgtggcagata |
194 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
474 |
actccaaaatattgcaaccaaccgttgagaaagtgtggcagata |
431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 46 - 177
Target Start/End: Complemental strand, 12354726 - 12354595
Alignment:
| Q |
46 |
attcacaagttgccaatcttcaaccaaagaccgagctctttcaaccactgttgcacaagtttccgtaacatcttcccacacctttatattcctatgtttc |
145 |
Q |
| |
|
|||| |||||||||| || ||| ||| ||||| ||||| || || |||||||||||||| ||||||| |||||||||||||| || |||||||| || |
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|
| T |
12354726 |
attcgcaagttgccattcgtcagtcaaggaccgcgctctatcgacaactgttgcacaagtctccgtaatgtcttcccacaccttgatgttcctatgcttt |
12354627 |
T |
|
| Q |
146 |
caaagactccaaaatattgcagccaaccgttg |
177 |
Q |
| |
|
||||| |||||||| ||||| |||| |||||| |
|
|
| T |
12354626 |
caaaggctccaaaaaattgccgccagccgttg |
12354595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 92 - 177
Target Start/End: Original strand, 30141665 - 30141750
Alignment:
| Q |
92 |
actgttgcacaagtttccgtaacatcttcccacacctttatattcctatgtttccaaagactccaaaatattgcagccaaccgttg |
177 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||| |||||| |||||||| |||||||| |||||||| ||||| |||| |||||| |
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|
| T |
30141665 |
actgttgcacaagtctccgtaatgtcttcccacaactttatgttcctatgcttccaaaggctccaaaaaattgctgccagccgttg |
30141750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 194
Target Start/End: Original strand, 17392591 - 17392711
Alignment:
| Q |
74 |
gaccgagctctttcaaccactgttgcacaagtttccgtaacatcttcccacacctttatattcctatgtttccaaagactccaaaatattgcagccaacc |
173 |
Q |
| |
|
|||| ||||||||||||||| | ||||||||| || | || |||||||| || | ||||||||| ||||||| |||||||||| ||| |||| || |
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|
| T |
17392591 |
gacctagctctttcaaccaccatcacacaagtttatgtttcgtcatcccacactttaacattcctatgcttccaaatgctccaaaatagtgctgccatcc |
17392690 |
T |
|
| Q |
174 |
gttgagaaagtgtggcagata |
194 |
Q |
| |
|
||||||||| |||||||||| |
|
|
| T |
17392691 |
tttgagaaagcgtggcagata |
17392711 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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