View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_high_2 (Length: 788)
Name: NF11745_high_2
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 526; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 22 - 579
Target Start/End: Original strand, 12794025 - 12794582
Alignment:
| Q |
22 |
gcgaaaccgaaaccgcatctaatcttcgcatacggaacattgaaacaaggattccccaaccacggtttaatggaagatcttaaaaccaaagacgacgccg |
121 |
Q |
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| T |
12794025 |
gcgaaagcgaaaccgcatctaatcttcgcatacggaacattgaaacaaggattccccaaccacggtttaatggaagatcttaaaaccaaagacgacgccg |
12794124 |
T |
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| Q |
122 |
ttttcatgaatacatactccacacagaaaccgtatccactggtgattggaccccacggaataccgtacctgatcaacctacccgggtcgggtcataaggt |
221 |
Q |
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| T |
12794125 |
ttttcatgaatacatactccacacagaaaccgtatccactggtgattggaccccacggaataccgtacctgatcaacctacccgggtcgggtcataaggt |
12794224 |
T |
|
| Q |
222 |
gaagggagaagtttacgcggtttcggatgacgctgtggttaagttggatgagttcgaaggtgtgggaagtgggttttatgagagggttccggtggtggtt |
321 |
Q |
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| T |
12794225 |
gaagggagaagtttacgcggtttcggatgacgctgtggttaagttggatgagttcgaaggtgtgggaagtgggttttatgagagggttccggtggtggtt |
12794324 |
T |
|
| Q |
322 |
gtgacggagggaggggagaaggtggaggcggaggggtattttgggcatagaagttttggggagaagctgtggaagatgaagggggaggttgggttggttg |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12794325 |
gtgacggagggaggggagaaggtggaggcggaggggtattttgggcatagaagttttggggagaagctgtggaagatgaagggggaggttgggttggttg |
12794424 |
T |
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| Q |
422 |
agtatggtgagaatgatgcgagggagtatgtgaggaaagatgatagacctggttgtagaaacactattcttgattttgtaagtcgttagtttatgttttg |
521 |
Q |
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| T |
12794425 |
agtatggtgagaatgatgcgagggagtatgtgaggaaagatgatagacctggttgtagaaacactattcttgattttgtaagtcgttagtttttgtttta |
12794524 |
T |
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| Q |
522 |
tgtttatcgtatgaacaatatatcaagatgttgtaatcattctataagaatttcatgt |
579 |
Q |
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| T |
12794525 |
tgttcatcgtatgaacaatagatcaacatgttgtaatcattttataagaattttatgt |
12794582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 22 - 579
Target Start/End: Original strand, 12731235 - 12731790
Alignment:
| Q |
22 |
gcgaaaccgaaaccgcatctaatcttcgcatacggaacattgaaacaaggattccccaaccacggtttaatggaagatcttaaaaccaaagacgacgccg |
121 |
Q |
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| T |
12731235 |
gcgaaagcgaaaccgcatctaatcttcgcatacggaacattgaaacaaggattccccaaccacggtttaatggaagatcttaaaaccaaagacgacgccg |
12731334 |
T |
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| Q |
122 |
ttttcatgaatacatactccacacagaaaccgtatccactggtgattggaccccacggaataccgtacctgatcaacctacccgggtcgggtcataaggt |
221 |
Q |
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| T |
12731335 |
ttttcatgaatacatactccacacagaaaccgtatccactggtgattggaccccacggaataccgtacctgatcaacctacccgggtcgggtcataaggt |
12731434 |
T |
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| Q |
222 |
gaagggagaagtttacgcggtttcggatgacgctgtggttaagttggatgagttcgaaggtgtgggaagtgggttttatgagagggttccggtggtggtt |
321 |
Q |
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| T |
12731435 |
gaagggagaagtttacgcggtttcggatgacgctgtggttaagttggatgagttcgaaggtgtgggaagtgggttttatgagagggttccggtggtggtt |
12731534 |
T |
|
| Q |
322 |
gtgacggagggaggggagaaggtggaggcggaggggtattttgggcatagaagttttggggagaagctgtggaagatgaagggggaggttgggttggttg |
421 |
Q |
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| T |
12731535 |
gtgacggagggaggggagaaggtggaggcggaggggtattttgggcatagaagttttggggagaagctgtggaagatgaagggggaggttgggttggttg |
12731634 |
T |
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| Q |
422 |
agtatggtgagaatgatgcgagggagtatgtgaggaaagatgatagacctggttgtagaaacactattcttgattttgtaagtcgttagtttatgttttg |
521 |
Q |
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| T |
12731635 |
agtatggtgagaatgatgcgagggagtatgtgaggaaagatgatagacctggttgtagaaacactattcttgattttgtaagtcgttagtttttg--ttg |
12731732 |
T |
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| Q |
522 |
tgtttatcgtatgaacaatatatcaagatgttgtaatcattctataagaatttcatgt |
579 |
Q |
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| T |
12731733 |
tgttcatcgtatgaacaatagatcaacatgttgtaatcattttataagaattttatgt |
12731790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 656 - 718
Target Start/End: Original strand, 12794749 - 12794811
Alignment:
| Q |
656 |
ttgcttcatagatgatggtatatattctatgttgttgtactatgagtagaatcttgtggcatc |
718 |
Q |
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|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
12794749 |
ttgcttcatagatgattgtattaattctatgttgttgtactatgagtagaatcttgtggcatc |
12794811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 656 - 718
Target Start/End: Original strand, 12731948 - 12732010
Alignment:
| Q |
656 |
ttgcttcatagatgatggtatatattctatgttgttgtactatgagtagaatcttgtggcatc |
718 |
Q |
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| T |
12731948 |
ttgcttcatagatgattgtattaattctatgttgttgtactatgagtagaatcttatggcatc |
12732010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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