View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_high_206 (Length: 238)
Name: NF11745_high_206
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_high_206 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 4590713 - 4590492
Alignment:
| Q |
1 |
tagttcatgcatatttgtaattattgataaattacttcgtaaactatttagtccctaataagttgacaacatgtgttggatcaacgtggggacatatcta |
100 |
Q |
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| T |
4590713 |
tagttcatgcatatttgtaattattgataaattacttcgtaaactatttagtccctaataagttgacaacatgtattggatcaacgtggggacatatcta |
4590614 |
T |
|
| Q |
101 |
gttaacataacatgtcataatctttaatgatagaagctaacagaaggatcattttgaatagcattttacaatattgagaataaatctgtcaattcgcacg |
200 |
Q |
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| T |
4590613 |
gttaacataacatgtcataatctttaatgatagaagctaacagaaggatcattttgaatagcattttacaatattgagaataaatctgtcaattcgcacg |
4590514 |
T |
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| Q |
201 |
actgcttcgggggcattgattg |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
4590513 |
actgcttcgggggcattgattg |
4590492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 178
Target Start/End: Complemental strand, 41725693 - 41725616
Alignment:
| Q |
101 |
gttaacataacatgtcataatctttaatgatagaagctaacagaaggatcattttgaatagcattttacaatattgag |
178 |
Q |
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|||||||| | |||||||| ||||||| ||| |||| |||| ||| ||||||||||||||| ||||| |||||||||| |
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| T |
41725693 |
gttaacatgatatgtcatagtctttaacgattgaagttaaccgaatgatcattttgaatagaatttttcaatattgag |
41725616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 41725796 - 41725762
Alignment:
| Q |
1 |
tagttcatgcatatttgtaattattgataaattac |
35 |
Q |
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| T |
41725796 |
tagttcatgtatatttgtaattattgataaattac |
41725762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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