View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11745_high_21 (Length: 558)
Name: NF11745_high_21
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_high_21 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 528; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 19 - 558
Target Start/End: Complemental strand, 34885036 - 34884497
Alignment:
| Q |
19 |
cttctagcattatcaaatcagagcttctgcagcaccaaaaagaagcactgggatggctttatcatcgcgaaagtacccatgatttaccgccgttttggga |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
34885036 |
cttctagcattatcaaatcagagcttctgcagcaccaaaaagaagcactgggatggctttatcatcgcgaaagtacccaagatttaccgccgttttggga |
34884937 |
T |
|
| Q |
119 |
ggagaaagtggggaatttcgtcaatgtgttgacgaattatcaaactaatgcgcgaccggagcctcttcggggagggatattcgccgatgggatgggatta |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
34884936 |
ggagaaagtggggaatttcgtcaatgtgttgacgaattatcaaactaatgcgcgaccggagcctcttcggggagggatattcgcagatgggatgggatta |
34884837 |
T |
|
| Q |
219 |
gggaagactttaactttgttatctttgattagttatgataaaatgaaaatgaaaagtgggaagaaaagaggtaggagtagtgtagagagggtggagagtg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34884836 |
gggaagactttaactttgttatctttgattagttatgataaaatgaaaatgaaaagtgggaagaaaagaggtaggagtagtgtagagagggtggagagtg |
34884737 |
T |
|
| Q |
319 |
agacagatggtacattgattgtgtgtcctccttctgtgatttcgacgtggataactcagttggaggaacatactaaccgcggcacgttgaaggtttatat |
418 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34884736 |
agacaaatggtacattgattgtgtgtcctccttctgtgatttcgacgtggataactcagttggaggaacatactaaccgcggcacgttgaaggtttatat |
34884637 |
T |
|
| Q |
419 |
gtactatggtgataggaggactcaagatgctgaggagttgaggaaatatgatattgtgttgactacttatgctacattgggagccgagttgcggtgttca |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34884636 |
gtactatggtgataggaggactcaagatgctgaggagttgaggaaatatgatattgtgttgactacttatgctacattgggagccgagttgcggtgttca |
34884537 |
T |
|
| Q |
519 |
gatactcctgtgaagaaattggggtggaggaggattgttt |
558 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34884536 |
gatactcctgtgaagaaattggggtggaggaggattgttt |
34884497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University