View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_high_214 (Length: 231)
Name: NF11745_high_214
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_high_214 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 44668545 - 44668354
Alignment:
| Q |
18 |
cataattaatgcatgttacctaaaaaggaaacttcgcgatgctggcatttgcacaatgttgaatgaatatagcaatacagttgtttttgagaagccttta |
117 |
Q |
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| T |
44668545 |
cataatgaatgcatgttacctaaaaaggaaacttcgcgatgctggcatttgcacaatgttgaatgaatatagcaatacagttgtttttgagaagccttta |
44668446 |
T |
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| Q |
118 |
gattgtgagtttattcgaaaatggaatttagcttatgaaggagatattgcacatgtggtggtgatgcagcacgtaactgttgaaatgttgga |
209 |
Q |
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| T |
44668445 |
gattgtgagtttattcgaaaatggaatctagcttatgaaggagatattgcacatgtggtggtgatgcagcacgttactgttgaaatgttgga |
44668354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 46 - 209
Target Start/End: Complemental strand, 44640204 - 44640041
Alignment:
| Q |
46 |
aaacttcgcgatgctggcatttgcacaatgttgaatgaatatagcaatacagttgtttttgagaagcctttagattgtgagtttattcgaaaatggaatt |
145 |
Q |
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| T |
44640204 |
aaacttcgtgatgctggaattggtacaatgttaaatgaatttagcaacacagttgtttttgagaagcctttggatattgagtttattcgaaagtggagtt |
44640105 |
T |
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| Q |
146 |
tagcttatgaaggagatattgcacatgtggtggtgatgcagcacgtaactgttgaaatgttgga |
209 |
Q |
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| T |
44640104 |
tagcatatcaaggaaatattgcacatgtggtggtgatgcaacatgttactattgaaatgttgga |
44640041 |
T |
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