View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11745_high_215 (Length: 229)

Name: NF11745_high_215
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11745_high_215
NF11745_high_215
[»] chr5 (2 HSPs)
chr5 (55-206)||(12540724-12540875)
chr5 (59-203)||(28385376-28385520)
[»] chr7 (1 HSPs)
chr7 (59-206)||(3417520-3417667)
[»] chr2 (3 HSPs)
chr2 (61-206)||(13448402-13448547)
chr2 (59-201)||(13454878-13455020)
chr2 (59-206)||(13440239-13440386)
[»] chr4 (4 HSPs)
chr4 (64-206)||(48965368-48965510)
chr4 (59-201)||(48958188-48958333)
chr4 (59-173)||(48961365-48961482)
chr4 (101-177)||(48912380-48912456)
[»] chr6 (2 HSPs)
chr6 (94-176)||(12590200-12590282)
chr6 (59-176)||(12483454-12483577)
[»] scaffold0536 (2 HSPs)
scaffold0536 (94-177)||(10521-10604)
scaffold0536 (94-144)||(6539-6589)


Alignment Details
Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 55 - 206
Target Start/End: Complemental strand, 12540875 - 12540724
Alignment:
Q  55 tggatgccgaagggatttgaggagagaaacattggaaaaaagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcggtgg 154  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12540875 tggatgccgaagggatttgaggagagaaacattggaaaaaagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcggtgg 12540776  T
Q  155 ggggatttatgacacattgtgggggaaactcaattgtagaggctgttggtgc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12540775 ggggatttatgacacattgtgggggaaactcaattgtagaggctgttggtgc 12540724  T

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Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 59 - 203
Target Start/End: Complemental strand, 28385520 - 28385376
Alignment:
Q  59 tgccgaagggatttgaggagagaaacattggaaaaaagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcggtgggggg 158  Q
    |||| ||||||||||||||||||||||||||||| |||||||| || || ||||||||||||||||| |||  |||||||||| ||||||||||||||||    
T  28385520 tgccaaagggatttgaggagagaaacattggaaagaagggtttcataatcaggggttgggccccacaagttctgatattgagcaaccctgcggtgggggg 28385421  T
Q  159 atttatgacacattgtgggggaaactcaattgtagaggctgttgg 203  Q
    |||| |||||||||| || || |||||||||||||||||||||||    
T  28385420 atttctgacacattgcggagggaactcaattgtagaggctgttgg 28385376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 59 - 206
Target Start/End: Original strand, 3417520 - 3417667
Alignment:
Q  59 tgccgaagggatttgaggagagaaacattggaaaaaagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcggtgggggg 158  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  3417520 tgccgaagggatttgaggagagaaacattggaaagaagggtttgatcgttaggggttgggccccacaggttcagatattgagccaccctgcggtaggggg 3417619  T
Q  159 atttatgacacattgtgggggaaactcaattgtagaggctgttggtgc 206  Q
    ||||||||||||||||||||| |||||| |||| ||||||||||||||    
T  3417620 atttatgacacattgtggggggaactcatttgttgaggctgttggtgc 3417667  T

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Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 61 - 206
Target Start/End: Complemental strand, 13448547 - 13448402
Alignment:
Q  61 ccgaagggatttgaggagagaaacattggaaaaaagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcggtggggggat 160  Q
    |||||||||||||| |||||||| || || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  13448547 ccgaagggatttgaagagagaaatatcgggaagaagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcagtggggggat 13448448  T
Q  161 ttatgacacattgtgggggaaactcaattgtagaggctgttggtgc 206  Q
    ||||||| ||||| ||||| |||||||  |||||||||||| ||||    
T  13448447 ttatgacgcattgcggggggaactcaaccgtagaggctgttagtgc 13448402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 59 - 201
Target Start/End: Complemental strand, 13455020 - 13454878
Alignment:
Q  59 tgccgaagggatttgaggagagaaacattggaaaaaagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcggtgggggg 158  Q
    |||||||||||||||| |||| |||||| |  ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||    
T  13455020 tgccgaagggatttgaagagaaaaacatcgagaaaaagggtttgatcattaggggttgggccccacaagttaagatattgagtcaccctgcagtgggggg 13454921  T
Q  159 atttatgacacattgtgggggaaactcaattgtagaggctgtt 201  Q
    ||||||||| ||||| ||||| |||||||| ||||||||||||    
T  13454920 atttatgacgcattgcggggggaactcaatcgtagaggctgtt 13454878  T

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Target: chr2; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 59 - 206
Target Start/End: Complemental strand, 13440386 - 13440239
Alignment:
Q  59 tgccgaagggatttgaggagagaaacattggaaaaaagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcggtgggggg 158  Q
    |||| |||||||| || |||||||||||| | |  | |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  13440386 tgccaaagggattcgaagagagaaacattaggaggatgggtttgatcattaagggttgggccccacaagttaagatattgagccaccctgcggtgggggg 13440287  T
Q  159 atttatgacacattgtgggggaaactcaattgtagaggctgttggtgc 206  Q
    ||||||||| ||||| ||||| ||||||||||||||| ||||| ||||    
T  13440286 atttatgacgcattgcggggggaactcaattgtagagtctgttagtgc 13440239  T

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Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 64 - 206
Target Start/End: Complemental strand, 48965510 - 48965368
Alignment:
Q  64 aagggatttgaggagagaaacattggaaaaaagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcggtggggggattta 163  Q
    |||||||| || ||||||||||||||||| ||||||||||| |||||||||||||| || ||||||  |||  |||||||||| || ||||| |  ||||    
T  48965510 aagggattcgaagagagaaacattggaaagaagggtttgattattaggggttgggctccgcaggttctgattctgagccaccccgctgtgggtgccttta 48965411  T
Q  164 tgacacattgtgggggaaactcaattgtagaggctgttggtgc 206  Q
    |||| ||||||||  | ||||| |  || ||||||||||||||    
T  48965410 tgactcattgtggttggaactccacagtggaggctgttggtgc 48965368  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 59 - 201
Target Start/End: Complemental strand, 48958333 - 48958188
Alignment:
Q  59 tgccgaagggatttgaggagagaaacattggaaaaaag---ggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcggtggg 155  Q
    ||||||| ||||| || ||||||||||||||||| |||   ||||||||||||||||| ||||||||||| |||  |||  ||||||||  ||| |||||    
T  48958333 tgccgaaaggattcgaagagagaaacattggaaagaagaaaggtttgatcattagggggtgggccccacaagttttgattctgagccacattgccgtggg 48958234  T
Q  156 gggatttatgacacattgtgggggaaactcaattgtagaggctgtt 201  Q
     | ||||||||||||||| ||| | ||||| | ||| |||||||||    
T  48958233 tgcatttatgacacattgcgggtggaactccactgtggaggctgtt 48958188  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 173
Target Start/End: Complemental strand, 48961482 - 48961365
Alignment:
Q  59 tgccgaagggatttgaggagagaaacattggaaaaaag---ggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcggtggg 155  Q
    ||||||| |||||||| ||||||||||||| ||| |||   ||||||||||||| ||| ||||||||||| |||| |||  || ||||| | ||||||||    
T  48961482 tgccgaaaggatttgaagagagaaacattgaaaagaagaagggtttgatcattaaggggtgggccccacaagttatgatcctgggccacacagcggtggg 48961383  T
Q  156 gggatttatgacacattg 173  Q
     |  |||||||| |||||    
T  48961382 tgtgtttatgacgcattg 48961365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 177
Target Start/End: Original strand, 48912380 - 48912456
Alignment:
Q  101 tgatcattaggggttgggccccacaggttaagatattgagccaccctgcggtggggggatttatgacacattgtggg 177  Q
    |||| |||| ||||||||| |||||||||| |||  |||||||| | || ||||| | |||||||||||||||||||    
T  48912380 tgattattaagggttgggctccacaggttatgattctgagccacacagccgtgggtgcatttatgacacattgtggg 48912456  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 176
Target Start/End: Original strand, 12590200 - 12590282
Alignment:
Q  94 aagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcggtggggggatttatgacacattgtgg 176  Q
    |||||||||||||||||||||||||||||||| || | |||  ||||||||  ||| ||||| |  |||||||||||||||||    
T  12590200 aagggtttgatcattaggggttgggccccacaagtaatgattatgagccacaatgcagtgggcgcgtttatgacacattgtgg 12590282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 176
Target Start/End: Original strand, 12483454 - 12483577
Alignment:
Q  59 tgccgaagggatttgaggagagaaacattgga------aaaaagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcggt 152  Q
    ||||||||||||||||||||||||||||| ||      || | |||||| ||||| ||||| ||||| ||||||||   ||| |||||||||||||| ||    
T  12483454 tgccgaagggatttgaggagagaaacattagaaggaataagatgggtttaatcatcagggggtgggcaccacaggtactgattttgagccaccctgcagt 12483553  T
Q  153 ggggggatttatgacacattgtgg 176  Q
    ||| | ||||||||| || |||||    
T  12483554 gggtgcatttatgactcactgtgg 12483577  T

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Target: scaffold0536 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 177
Target Start/End: Original strand, 10521 - 10604
Alignment:
Q  94 aagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcggtggggggatttatgacacattgtggg 177  Q
    ||||||||||| |||| |||||||||||| ||||||| |||  | |||||| |||  ||||| |  ||||||||||||||||||    
T  10521 aagggtttgattattaagggttgggcccctcaggttatgattctaagccacactgttgtgggtgcgtttatgacacattgtggg 10604  T

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Target: scaffold0536; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 6539 - 6589
Alignment:
Q  94 aagggtttgatcattaggggttgggccccacaggttaagatattgagccac 144  Q
    ||||||||||| |||||||||||||| ||||| |||| ||| |||||||||    
T  6539 aagggtttgattattaggggttgggctccacaagttatgattttgagccac 6589  T

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