View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11745_high_221 (Length: 227)

Name: NF11745_high_221
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11745_high_221
NF11745_high_221
[»] chr7 (8 HSPs)
chr7 (132-227)||(21262045-21262141)
chr7 (12-72)||(21262201-21262261)
chr7 (178-227)||(21263260-21263309)
chr7 (178-227)||(47573154-47573203)
chr7 (183-227)||(19628126-19628170)
chr7 (179-227)||(23526709-23526757)
chr7 (182-227)||(7849203-7849247)
chr7 (28-68)||(13563076-13563116)
[»] chr6 (5 HSPs)
chr6 (132-227)||(21383714-21383810)
chr6 (12-72)||(21383594-21383654)
chr6 (178-227)||(21382546-21382595)
chr6 (178-223)||(26545808-26545853)
chr6 (185-227)||(26544408-26544450)
[»] chr4 (7 HSPs)
chr4 (132-227)||(1996951-1997047)
chr4 (12-72)||(1996831-1996891)
chr4 (178-227)||(1995932-1995981)
chr4 (185-227)||(5169377-5169419)
chr4 (189-227)||(56083418-56083456)
chr4 (186-227)||(16314150-16314191)
chr4 (183-227)||(45550512-45550555)
[»] chr1 (6 HSPs)
chr1 (132-226)||(48030131-48030225)
chr1 (178-227)||(35712517-35712566)
chr1 (178-227)||(35713636-35713685)
chr1 (135-223)||(13970018-13970105)
chr1 (176-227)||(43402324-43402375)
chr1 (30-71)||(48030029-48030070)
[»] chr8 (3 HSPs)
chr8 (132-212)||(44038915-44038994)
chr8 (143-212)||(44037681-44037750)
chr8 (28-72)||(44038810-44038854)
[»] chr5 (4 HSPs)
chr5 (132-223)||(7492926-7493018)
chr5 (178-227)||(27490165-27490214)
chr5 (138-227)||(27491175-27491265)
chr5 (28-69)||(6376820-6376861)
[»] chr3 (9 HSPs)
chr3 (177-227)||(39605643-39605693)
chr3 (178-227)||(34799929-34799978)
chr3 (178-227)||(34801332-34801381)
chr3 (185-227)||(39606584-39606626)
chr3 (178-227)||(37085476-37085525)
chr3 (178-227)||(37086682-37086731)
chr3 (178-227)||(52092839-52092888)
chr3 (28-72)||(34800086-34800130)
chr3 (28-68)||(53613125-53613165)
[»] chr2 (3 HSPs)
chr2 (181-227)||(29042398-29042444)
chr2 (28-68)||(18751257-18751297)
chr2 (179-227)||(29043564-29043611)


Alignment Details
Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 132 - 227
Target Start/End: Complemental strand, 21262141 - 21262045
Alignment:
Q  132 cacatcagcgtgccacataagctaatttatccaatcaaatggactg-ggggtgtaaaccaaaaaatctacattttacaagggggaatctccaagttt 227  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  21262141 cacatcagcgcgccacataagctaatttatccaatcaaatggactgcggggtgtaaaccaaagaatctacattttacaagggggaatctccaagttt 21262045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 21262261 - 21262201
Alignment:
Q  12 gagaagaagaaaatgcttaggggtattttagatatttcgtatctttagtattattttttgt 72  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  21262261 gagaagaagaaaatgcttaggggtattttaggtatttcgcatctttagtattattttttgt 21262201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 21263260 - 21263309
Alignment:
Q  178 ggggtgtaaaccaaaaaatctacattttacaagggggaatctccaagttt 227  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  21263260 ggggggtaaaccaaagaatctacattttacaagggggaatctccaagttt 21263309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 47573203 - 47573154
Alignment:
Q  178 ggggtgtaaaccaaaaaatctacattttacaagggggaatctccaagttt 227  Q
    |||||| |||||||||||||| ||||||||||||  ||||||||||||||    
T  47573203 ggggtgcaaaccaaaaaatcttcattttacaaggaagaatctccaagttt 47573154  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 227
Target Start/End: Original strand, 19628126 - 19628170
Alignment:
Q  183 gtaaaccaaaaaatctacattttacaagggggaatctccaagttt 227  Q
    |||||||||| |||||  |||||||||||||||||||||||||||    
T  19628126 gtaaaccaaataatctttattttacaagggggaatctccaagttt 19628170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 23526709 - 23526757
Alignment:
Q  179 gggtgtaaaccaaaaaatctacattttacaagggggaatctccaagttt 227  Q
    |||||||||||||| ||||| ||||||| | ||||||||||||||||||    
T  23526709 gggtgtaaaccaaagaatcttcattttataggggggaatctccaagttt 23526757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 7849203 - 7849247
Alignment:
Q  182 tgtaaaccaaaaaatctacattttacaagggggaatctccaagttt 227  Q
    ||||||||||| ||||| |||||||||| |||||||||||||||||    
T  7849203 tgtaaaccaaagaatcttcattttacaa-ggggaatctccaagttt 7849247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 13563116 - 13563076
Alignment:
Q  28 ttaggggtattttagatatttcgtatctttagtattatttt 68  Q
    ||||||||||||||| |||||| ||||||| ||||||||||    
T  13563116 ttaggggtattttaggtatttcatatcttttgtattatttt 13563076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 132 - 227
Target Start/End: Original strand, 21383714 - 21383810
Alignment:
Q  132 cacatcagcgtgccacataagctaatttatccaatcaaatggactg-ggggtgtaaaccaaaaaatctacattttacaagggggaatctccaagttt 227  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  21383714 cacatcagcgcgccacataagctaatttatccaatcaaatggactgcggggtgtaaaccaaagaatctacattttacaagggggaatctccaagttt 21383810  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 21383594 - 21383654
Alignment:
Q  12 gagaagaagaaaatgcttaggggtattttagatatttcgtatctttagtattattttttgt 72  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  21383594 gagaagaagaaaatgcttaggggtattttaggtatttcgcatctttagtattattttttgt 21383654  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 21382595 - 21382546
Alignment:
Q  178 ggggtgtaaaccaaaaaatctacattttacaagggggaatctccaagttt 227  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  21382595 ggggggtaaaccaaagaatctacattttacaagggggaatctccaagttt 21382546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 26545808 - 26545853
Alignment:
Q  178 ggggtgtaaaccaaaaaatctacattttacaagggggaatctccaa 223  Q
    ||||||||||||||| |||||  |||||||||||||||||||||||    
T  26545808 ggggtgtaaaccaaagaatctttattttacaagggggaatctccaa 26545853  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 227
Target Start/End: Complemental strand, 26544450 - 26544408
Alignment:
Q  185 aaaccaaaaaatctacattttacaagggggaatctccaagttt 227  Q
    |||||||| |||||  |||||||||||||||||||||||||||    
T  26544450 aaaccaaagaatctttattttacaagggggaatctccaagttt 26544408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 132 - 227
Target Start/End: Original strand, 1996951 - 1997047
Alignment:
Q  132 cacatcagcgtgccacataagctaatttatccaatcaaatggactgggg-gtgtaaaccaaaaaatctacattttacaagggggaatctccaagttt 227  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  1996951 cacatcagcgcgccacataagctaatttatccaatcaaatggactggggggtgtaaaccaaagaatctacattttacaagggggaatctccaagttt 1997047  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 1996831 - 1996891
Alignment:
Q  12 gagaagaagaaaatgcttaggggtattttagatatttcgtatctttagtattattttttgt 72  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  1996831 gagaagaagaaaatgcttaggggtattttaggtatttcgcatctttagtattattttttgt 1996891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 1995981 - 1995932
Alignment:
Q  178 ggggtgtaaaccaaaaaatctacattttacaagggggaatctccaagttt 227  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  1995981 ggggggtaaaccaaagaatctacattttacaagggggaatctccaagttt 1995932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 227
Target Start/End: Complemental strand, 5169419 - 5169377
Alignment:
Q  185 aaaccaaaaaatctacattttacaagggggaatctccaagttt 227  Q
    |||||||| ||||| |||||| |||||||||||||||||||||    
T  5169419 aaaccaaagaatcttcattttgcaagggggaatctccaagttt 5169377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 227
Target Start/End: Complemental strand, 56083456 - 56083418
Alignment:
Q  189 caaaaaatctacattttacaagggggaatctccaagttt 227  Q
    |||| ||||| ||||||||||||||||||||||||||||    
T  56083456 caaagaatcttcattttacaagggggaatctccaagttt 56083418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 227
Target Start/End: Original strand, 16314150 - 16314191
Alignment:
Q  186 aaccaaaaaatctacattttacaagggggaatctccaagttt 227  Q
    ||||||| |||||  |||||||||||||||||||||||||||    
T  16314150 aaccaaagaatctttattttacaagggggaatctccaagttt 16314191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 227
Target Start/End: Original strand, 45550512 - 45550555
Alignment:
Q  183 gtaaaccaaaaaatctacattttacaagggggaatctccaagttt 227  Q
    ||||||||||||||||  ||||||| |||||||||||||||||||    
T  45550512 gtaaaccaaaaaatctttattttac-agggggaatctccaagttt 45550555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 6e-30; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 132 - 226
Target Start/End: Original strand, 48030131 - 48030225
Alignment:
Q  132 cacatcagcgtgccacataagctaatttatccaatcaaatggactgggggtgtaaaccaaaaaatctacattttacaagggggaatctccaagtt 226  Q
    |||||||||| |||||||||||| ||||||||||||| |||| |||||||||||||||||| ||||||||||||| ||||| |||||||||||||    
T  48030131 cacatcagcgcgccacataagcttatttatccaatcagatggcctgggggtgtaaaccaaagaatctacattttataagggagaatctccaagtt 48030225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 35712566 - 35712517
Alignment:
Q  178 ggggtgtaaaccaaaaaatctacattttacaagggggaatctccaagttt 227  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  35712566 ggggtgtaaaccaaagaatcttcattttacaagggggaatctccaagttt 35712517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 35713636 - 35713685
Alignment:
Q  178 ggggtgtaaaccaaaaaatctacattttacaagggggaatctccaagttt 227  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  35713636 ggggtgtaaaccaaagaatcttcattttacaagggggaatctccaagttt 35713685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 135 - 223
Target Start/End: Complemental strand, 13970105 - 13970018
Alignment:
Q  135 atcagcgtgccacataagctaatttatccaatcaaatggactgggggtgtaaaccaaaaaatctacattttacaagggggaatctccaa 223  Q
    ||||||||||||||| | || ||| ||||| ||| ||||  ||||||| ||||||||| ||||| |||||||| |||||||||||||||    
T  13970105 atcagcgtgccacatcatctcattaatccagtcatatggtttgggggtataaaccaaagaatcttcattttac-agggggaatctccaa 13970018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 43402375 - 43402324
Alignment:
Q  176 tgggggtgtaaaccaaaaaatctacattttacaagggggaatctccaagttt 227  Q
    ||||||||||||||||| |||||  ||||||||  |||||||||||||||||    
T  43402375 tgggggtgtaaaccaaagaatctttattttacataggggaatctccaagttt 43402324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 48030029 - 48030070
Alignment:
Q  30 aggggtattttagatatttcgtatctttagtattattttttg 71  Q
    ||||||||||||| ||||||  ||||||||||||||||||||    
T  48030029 aggggtattttaggtatttcacatctttagtattattttttg 48030070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 132 - 212
Target Start/End: Original strand, 44038915 - 44038994
Alignment:
Q  132 cacatcagcgtgccacataagctaatttatccaatcaaatggactgggggtgtaaaccaaaaaatctacattttacaaggg 212  Q
    ||||||||| |||||| ||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||| |||||    
T  44038915 cacatcagcatgccacgtaagctaatttatccaatcaaatggtct-ggggtgtaaaccaaagaatctacattttataaggg 44038994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 212
Target Start/End: Complemental strand, 44037750 - 44037681
Alignment:
Q  143 gccacataagctaatttatccaatcaaatggactgggggtgtaaaccaaaaaatctacattttacaaggg 212  Q
    ||||| |||||||||||||||| |||  ||  ||  ||| || |||||||||||||||||||||||||||    
T  44037750 gccacttaagctaatttatccagtcaggtgaccttagggggtgaaccaaaaaatctacattttacaaggg 44037681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 44038810 - 44038854
Alignment:
Q  28 ttaggggtattttagatatttcgtatctttagtattattttttgt 72  Q
    ||||||||||||||| ||||||  || ||||||||||||||||||    
T  44038810 ttaggggtattttaggtatttcacatatttagtattattttttgt 44038854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 132 - 223
Target Start/End: Original strand, 7492926 - 7493018
Alignment:
Q  132 cacatcagcgtgccacataagctaatttatccaatcaaatggactggggg-tgtaaaccaaaaaatctacattttacaagggggaatctccaa 223  Q
    |||||||||| ||||| |||||||||||||||||| | ||||  |||||| ||| ||||||| ||||||||||||||||| ||||||||||||    
T  7492926 cacatcagcgcgccacctaagctaatttatccaatgagatggtttgggggatgtgaaccaaagaatctacattttacaagagggaatctccaa 7493018  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 27490214 - 27490165
Alignment:
Q  178 ggggtgtaaaccaaaaaatctacattttacaagggggaatctccaagttt 227  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  27490214 ggggtgtaaaccaaagaatcttcattttacaagggggaatctccaagttt 27490165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 138 - 227
Target Start/End: Original strand, 27491175 - 27491265
Alignment:
Q  138 agcgtgccacataagctaatttatccaatcaaatggactg-ggggtgtaaaccaaaaaatctacattttacaagggggaatctccaagttt 227  Q
    |||||||||||| |||| ||| ||||| ||| ||||  |  ||||||||||||||| ||||| |||||||||| |||||||||||||||||    
T  27491175 agcgtgccacatcagctcattgatccagtcagatggcatcaggggtgtaaaccaaagaatcttcattttacaatggggaatctccaagttt 27491265  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 6376820 - 6376861
Alignment:
Q  28 ttaggggtattttagatatttcgtatctttagtattattttt 69  Q
    ||||||||| ||||| ||||||| ||||||||||||||||||    
T  6376820 ttaggggtactttaggtatttcgaatctttagtattattttt 6376861  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 39605693 - 39605643
Alignment:
Q  177 gggggtgtaaaccaaaaaatctacattttacaagggggaatctccaagttt 227  Q
    |||||||||||||||| ||||| ||||||||| ||||||||||||||||||    
T  39605693 gggggtgtaaaccaaagaatcttcattttacaggggggaatctccaagttt 39605643  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 34799978 - 34799929
Alignment:
Q  178 ggggtgtaaaccaaaaaatctacattttacaagggggaatctccaagttt 227  Q
    |||| |||||||||| ||||| |||||| |||||||||||||||||||||    
T  34799978 ggggggtaaaccaaagaatcttcattttgcaagggggaatctccaagttt 34799929  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 34801332 - 34801381
Alignment:
Q  178 ggggtgtaaaccaaaaaatctacattttacaagggggaatctccaagttt 227  Q
    |||| |||||||||| |||||  |||||||||||||||||||||||||||    
T  34801332 ggggggtaaaccaaagaatctttattttacaagggggaatctccaagttt 34801381  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 227
Target Start/End: Original strand, 39606584 - 39606626
Alignment:
Q  185 aaaccaaaaaatctacattttacaagggggaatctccaagttt 227  Q
    |||||||| ||||| |||||| |||||||||||||||||||||    
T  39606584 aaaccaaagaatcttcattttgcaagggggaatctccaagttt 39606626  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 37085525 - 37085476
Alignment:
Q  178 ggggtgtaaaccaaaaaatctacattttacaagggggaatctccaagttt 227  Q
    |||| |||||||||| |||||  |||||||| ||||||||||||||||||    
T  37085525 ggggggtaaaccaaagaatctttattttacaggggggaatctccaagttt 37085476  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 37086682 - 37086731
Alignment:
Q  178 ggggtgtaaaccaaaaaatctacattttacaagggggaatctccaagttt 227  Q
    |||| |||||||||| |||||  |||||||| ||||||||||||||||||    
T  37086682 ggggggtaaaccaaagaatctttattttacaggggggaatctccaagttt 37086731  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 52092839 - 52092888
Alignment:
Q  178 ggggtgtaaaccaaaaaatctacattttacaagggggaatctccaagttt 227  Q
    |||||||||| |||| |||||  ||||||||||| |||||||||||||||    
T  52092839 ggggtgtaaatcaaagaatctttattttacaaggaggaatctccaagttt 52092888  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 34800130 - 34800086
Alignment:
Q  28 ttaggggtattttagatatttcgtatctttagtattattttttgt 72  Q
    ||||||||| ||||| ||||||  |||||||||||||||||||||    
T  34800130 ttaggggtagtttaggtatttcacatctttagtattattttttgt 34800086  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 53613165 - 53613125
Alignment:
Q  28 ttaggggtattttagatatttcgtatctttagtattatttt 68  Q
    ||||||||||||||| |||||| ||||||| ||||||||||    
T  53613165 ttaggggtattttaggtatttcatatcttttgtattatttt 53613125  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 29042444 - 29042398
Alignment:
Q  181 gtgtaaaccaaaaaatctacattttacaagggggaatctccaagttt 227  Q
    |||||||||||| ||||| |||||| |||||||||||||||||||||    
T  29042444 gtgtaaaccaaagaatcttcatttttcaagggggaatctccaagttt 29042398  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 18751257 - 18751297
Alignment:
Q  28 ttaggggtattttagatatttcgtatctttagtattatttt 68  Q
    ||||||||||||||| ||||||  |||||||||||||||||    
T  18751257 ttaggggtattttaggtatttcaaatctttagtattatttt 18751297  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 29043564 - 29043611
Alignment:
Q  179 gggtgtaaaccaaaaaatctacattttacaagggggaatctccaagttt 227  Q
    |||||||||||||| ||||| ||||||||||||| | ||||||||||||    
T  29043564 gggtgtaaaccaaataatcttcattttacaagggtg-atctccaagttt 29043611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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