View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_high_224 (Length: 221)
Name: NF11745_high_224
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_high_224 |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 10 - 205
Target Start/End: Complemental strand, 38666748 - 38666551
Alignment:
| Q |
10 |
agagaagaactttgaagaagaggattattctactataagagaaagccatgtatgtttgtttgattcaactaatatcaatctatgaactgttgttgtgctt |
109 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38666748 |
agagaagaactttgaaga---ggattattctactataagagaaagccatgtatgtttgtttgattcaactaatatcaatctatgaactgttgttgtgctt |
38666652 |
T |
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| Q |
110 |
tgaaggagtttattaattctcacaaactatatgata-----tgatgaaattaaattgtgatatgttaatgtgttttgatgaaaggagggggtggcataac |
204 |
Q |
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| T |
38666651 |
tgaaggagtttattaattctcacaaactatatgatatgatatgatgaaattaaattgtgatatgttaatgtgttttgatgaaaggagggggtggcataac |
38666552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 10 - 205
Target Start/End: Complemental strand, 38674499 - 38674297
Alignment:
| Q |
10 |
agagaagaactttgaagaagaggattattctactataagagaaagccatgtatgtttgtttgattcaactaatatcaatctatgaactgttgttgtgctt |
109 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38674499 |
agagaagaactttgaaga---ggattattctactataagagaaagccatgtatgtttgtttgattcaactaatatcaatctatgaactgttgttgtgctt |
38674403 |
T |
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| Q |
110 |
tgaaggagtttattaattctcacaaactatatgata----------tgatgaaattaaattgtgatatgttaatgtgttttgatgaaaggagggggtggc |
199 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38674402 |
tgaaggagtttattaattctcacaaactatatgatatgatatgatatgatgaaattaaattgtgatatgttaatgtgttttgatgaaaggagggggtggc |
38674303 |
T |
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| Q |
200 |
ataact |
205 |
Q |
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|||||| |
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| T |
38674302 |
ataact |
38674297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 10 - 194
Target Start/End: Original strand, 38668923 - 38669109
Alignment:
| Q |
10 |
agagaagaactttgaagaagaggattattctactataagagaaagccatgtatgtttgtttgattcaactaatatcaatctatgaactgttgttgtgctt |
109 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38668923 |
agagaagaactttgaag---aggattattctactataagagaaagccatgtatgtttgtttgattcaactaatatcaatctatgaactgttgttgtgctt |
38669019 |
T |
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| Q |
110 |
tgaaggagtttattaattctcacaaact-----atatgatatgatgaaattaaattgtgatatgttaatgtgttttgatgaaaggagggg |
194 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
38669020 |
tgaaggagtttattaattctcacaaactatatgatatgatatgatgaaattaaattgtgatatgttaatgtgttttgatggaaggagggg |
38669109 |
T |
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