View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11745_high_228 (Length: 214)
Name: NF11745_high_228
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_high_228 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 38933840 - 38934040
Alignment:
| Q |
1 |
aatattttgccgtatttttgtgaaaggttgtgaagggaacggtggagtgggaggtttatgttgtggaggtttcctattatgggaagagatattgatggac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38933840 |
aatattttgccgtatttttgtgaaaggttgtgaagggaacggtggagtgggaggtttatgttgtggaggtttcctattatgggaagagatattgatggac |
38933939 |
T |
|
| Q |
101 |
ctggtggaaggtttttgaaatttcttctttggagtaaaagtttcaaggttacaatgaaactaagggaaaggagtgagtaatataacaatggtgttattac |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38933940 |
ctggtggaaggtttttgaactttcttctttggagtaaaagtttcaaggttacaatgaaactaagggaaaggagtgagtaatataacaatggtgttattac |
38934039 |
T |
|
| Q |
201 |
t |
201 |
Q |
| |
|
| |
|
|
| T |
38934040 |
t |
38934040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 7 - 188
Target Start/End: Original strand, 12156014 - 12156195
Alignment:
| Q |
7 |
ttgccgtatttttgtgaaaggttgtgaagggaacggtggagtgggaggtttatgttgtggaggtttcctattatgggaagagatattgatggacctggtg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||| |||||||| ||||||||||| ||||| |
|
|
| T |
12156014 |
ttgccgtatttttgtgaaaggttgtgaagggaacggtggagtgggaggttgatgtagtggaggtgtcctattaagggaagagttattgatggacttggtg |
12156113 |
T |
|
| Q |
107 |
gaaggtttttgaaatttcttctttggagtaaaagtttcaaggttacaatgaaactaagggaaaggagtgagtaatataacaa |
188 |
Q |
| |
|
|||||||||| || ||||||||||| ||||||||||||||||| | ||||||||||||||||||||| || ||||||||||| |
|
|
| T |
12156114 |
gaaggtttttaaactttcttctttgtagtaaaagtttcaaggtaaaaatgaaactaagggaaaggagggaataatataacaa |
12156195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University