View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_high_235 (Length: 207)
Name: NF11745_high_235
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_high_235 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 14 - 188
Target Start/End: Complemental strand, 32365514 - 32365340
Alignment:
| Q |
14 |
agatgaagaatcacaggttcaagttagagagaaaccattcgagaaaaaatatgcatttgcatctaaagatcaacaaggaggtattatagaaaatagaccg |
113 |
Q |
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| T |
32365514 |
agatgaagaatcacaggttcaagttagagagaaaccattcgagaaaaaatatgcatttgcatctaaagatcaacaaggaggtattatagaaaatagaccg |
32365415 |
T |
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| Q |
114 |
aaatggagtggaggaatacttgacatttggaatgatctatcattatcatatctctcacttttctgcagtttttgt |
188 |
Q |
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| T |
32365414 |
aaatggagtggaggaatacttgacatttggaatgatctatcattatcatatctctcacttttctgccctttttgt |
32365340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 14 - 188
Target Start/End: Complemental strand, 32377199 - 32377025
Alignment:
| Q |
14 |
agatgaagaatcacaggttcaagttagagagaaaccattcgagaaaaaatatgcatttgcatctaaagatcaacaaggaggtattatagaaaatagaccg |
113 |
Q |
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|||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||| |
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| T |
32377199 |
agatgaagaatcacaggttcaagttagagacaaacccttcgagaaaaaatacgcatttgtatctaaagatcaacaaggaggaattatagaaaatagaccg |
32377100 |
T |
|
| Q |
114 |
aaatggagtggaggaatacttgacatttggaatgatctatcattatcatatctctcacttttctgcagtttttgt |
188 |
Q |
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| T |
32377099 |
aaatggagtggaggaatacttgacatttggaatgatctatcattatcatatctctcacttttctgccctttttgt |
32377025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 102 - 143
Target Start/End: Complemental strand, 36122044 - 36122003
Alignment:
| Q |
102 |
gaaaatagaccgaaatggagtggaggaatacttgacatttgg |
143 |
Q |
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| T |
36122044 |
gaaaatagaccaaagtggagtggtggaatacttgacatttgg |
36122003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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