View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_high_238 (Length: 206)
Name: NF11745_high_238
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_high_238 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 1e-95; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 46466238 - 46466029
Alignment:
| Q |
1 |
ttgatcgaacaaaccctgcccttttgctaattccacccccattgcagatacaaaaccaatcatagccaaccttccattgattctttcaggtgctgcccca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46466238 |
ttgatcgaacaaaccctgcccttttgctaattccacccccattgcagatacaaaaccaatcatagccaaccttccattgattctttcaggtgctgcccca |
46466139 |
T |
|
| Q |
101 |
ccaaaagccatcaaatccgaaaacttcgtgcttatctgccattatatgatcatc----attattcattaaaaagatctcataattttgaccaaactcaat |
196 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
46466138 |
ccaaaagccatcaaatccgaaaactttgtgcttatctgccattatataatcatcattaattattcatcaaaaagatctcataattttgaccaaaatcaat |
46466039 |
T |
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| Q |
197 |
actttccata |
206 |
Q |
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|||||||||| |
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| T |
46466038 |
actttccata |
46466029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 46471443 - 46471242
Alignment:
| Q |
1 |
ttgatcgaacaaaccctgcccttttgctaattccacccccattgcagatacaaaaccaatcatagccaaccttccattgattctttcaggtgctgcccca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46471443 |
ttgatcgaacaaaccctgcccttttgctaattccacccccattgcagatacaaaaccaatcatagccaaccttccattgattctttcaggtgctgcccca |
46471344 |
T |
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| Q |
101 |
ccaaaagccatcaaatccgaaaacttcgtgcttatctgccattatatgatcatcattattcattaaaaagatctca-taattttgaccaaactcaatact |
199 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||| | ||| ||||| |||||||||||||| ||| |||| |
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| T |
46471343 |
ccaaaagccatcaaatccgaaaactttgtgcttatctgccattatataatcatcattaatcatttagaaggtctcattaattttgaccaaaatcagtact |
46471244 |
T |
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| Q |
200 |
tt |
201 |
Q |
| |
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|| |
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| T |
46471243 |
tt |
46471242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 46451848 - 46451658
Alignment:
| Q |
1 |
ttgatcgaacaaaccctgcccttttgctaattccacccccattgcagatacaaaaccaatcatagccaaccttccattgattctttcaggtgctgcccca |
100 |
Q |
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|||||| ||||||||||| |||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46451848 |
ttgatcaaacaaaccctgtccttttgctatttccacccccattgctgctacaaaaccaatcatagccaaccttccattgattctttcaggtgctggccca |
46451749 |
T |
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| Q |
101 |
ccaaaagccatcaaatccgaaaacttcgtgcttatctgccattatatgatcatcattattcattaaaaagatctcat-aattttgaccaaa |
190 |
Q |
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| T |
46451748 |
ccaaaagccatcaaatccgaaaactttgtgctcatctgccatattatcatcatcattatttattaaaagggtctcataaattttgaccaaa |
46451658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 46344708 - 46344849
Alignment:
| Q |
1 |
ttgatcgaacaaaccctgcccttttgctaattccacccccattgcagatacaaaaccaatcatagccaaccttccattgattctttcaggtgctgcccca |
100 |
Q |
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|||||| ||||||||||| |||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46344708 |
ttgatcaaacaaaccctgtccttttgctatttccacccccattgctgctacaaaaccaatcatagccaaccttccattgattctttcaggtgctggccca |
46344807 |
T |
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| Q |
101 |
ccaaaagccatcaaatccgaaaacttcgtgcttatctgccat |
142 |
Q |
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|||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
46344808 |
ccaaaagccatcaaatccgaaaactttgtgctcatctgccat |
46344849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 46462816 - 46462675
Alignment:
| Q |
1 |
ttgatcgaacaaaccctgcccttttgctaattccacccccattgcagatacaaaaccaatcatagccaaccttccattgattctttcaggtgctgcccca |
100 |
Q |
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|||||| ||||||||||| |||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46462816 |
ttgatcaaacaaaccctgtccttttgctatttccacccccattgctgctacaaaaccaatcatagccaaccttccattgattctttcaggtgctggccca |
46462717 |
T |
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| Q |
101 |
ccaaaagccatcaaatccgaaaacttcgtgcttatctgccat |
142 |
Q |
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||||||||||||||||||||||| || ||||| ||||||||| |
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| T |
46462716 |
ccaaaagccatcaaatccgaaaattttgtgctcatctgccat |
46462675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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