View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_high_241 (Length: 203)
Name: NF11745_high_241
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_high_241 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 151; Significance: 4e-80; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 1833173 - 1832968
Alignment:
| Q |
1 |
caatagtttttcggaaaccttataaaa--cagaaatgaataatcgtggatctaaactatctatcaaaaaatgcttataaatttaaaaatcaagtgaacat |
98 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1833173 |
caatagtttttcggaaaccttataaaaaacagaaatgaataatcgtggatctaaactatctatcaaaaaatgcttataaatttaaaaatcaagtgaacat |
1833074 |
T |
|
| Q |
99 |
gactaagatgatccctcatccccacaaatttctattcggtcacctctacttgatcaa-nnnnnnnnnnnnaattcagtttctatatttcatccaaaaata |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
1833073 |
gactaagatgatccctcatccccacaaatttctattcggtcacctctacttgatcaatttttttttttttaattcagtttctatatttcatccaaaaata |
1832974 |
T |
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| Q |
198 |
tttgtt |
203 |
Q |
| |
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|||||| |
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| T |
1832973 |
tttgtt |
1832968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 1867616 - 1867411
Alignment:
| Q |
1 |
caatagtttttcggaaaccttataaaa--cagaaatgaataatcgtggatctaaactatctatcaaaaaatgcttataaatttaaaaatcaagtgaacat |
98 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1867616 |
caatagtttttcggaaaccttataaaaaacagaaatgaataatcgtggatctaaactatctatcaaaaaatgcttataaatttaaaaatcaagtgaacat |
1867517 |
T |
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| Q |
99 |
gactaagatgatccctcatccccacaaatttctattcggtcacctctacttgatcaa-nnnnnnnnnnnnaattcagtttctatatttcatccaaaaata |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
1867516 |
gactaagatgatccctcatccccacaaatttctattcggtcacctctacttgatcaatttttttttttttaattcagtttctatatttcatccaaaaata |
1867417 |
T |
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| Q |
198 |
tttgtt |
203 |
Q |
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|||||| |
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| T |
1867416 |
tttgtt |
1867411 |
T |
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