View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_high_27 (Length: 546)
Name: NF11745_high_27
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 488; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 1 - 535
Target Start/End: Complemental strand, 51109253 - 51108729
Alignment:
| Q |
1 |
catttctgcatcgaatcggaaactttaggctgaataccgagaggacatttcaatttcgcagatgttacactcacctgcttcatgcttctttctcaaattc |
100 |
Q |
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| T |
51109253 |
catttctgcatcgaatctgaaactttaggctgaataccgagaggacatttcaatttcgcagatgttacactcacctgcttcatgcttctttctcaaattc |
51109154 |
T |
|
| Q |
101 |
tattcccaaacctaaaactctccctactgttatgccatattcgcattcgcttttccataatactagacccataaatgtttctccaattgttttaaacagc |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51109153 |
tattcccgaacctaaaactctccctactgttatgccatattcgcattcgcttttccataatactagacccataaatgtttctccaattgttttaaacagc |
51109054 |
T |
|
| Q |
201 |
gtgaggtgttatgctgcacccgttcaggtaatttacaaacttctagtagttgtaactagggcttaattatgaacaaagaaaccttaatgcatgaatgttc |
300 |
Q |
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| T |
51109053 |
gtgaggtgttatgctgcacccgttcaggtaatttacaaacttctagtagttgtaactagggcttaattatgaacaaagaaaccttaatgcatgaatgttc |
51108954 |
T |
|
| Q |
301 |
cttagaaacaatctcttttcaacactatcaaaattgtcatctttgctattgggaatatgttccatggtgattttggtattgtgacaatctgcgtctcttg |
400 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
51108953 |
cttagaaac----------caacactatcaaaattgtcatctttgctattgggaatatgttgcatggtgattttggtattgtgacaatctgcgtctcttg |
51108864 |
T |
|
| Q |
401 |
gttttattcatgtcgcgcattttgtgtttgtgccttcagtaagcttgagcattatccttcacgttatgtgtttggtagctttgctatgtattggtggtgt |
500 |
Q |
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| T |
51108863 |
gttttattcatgtcgcgcattttgtgtttgtgccttcagtaagcttgagcattatccttcacgttatgtgtttggtagctttgctatgtattggtggtgt |
51108764 |
T |
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| Q |
501 |
tggttgatgatgtttttctgtgttttctctttcat |
535 |
Q |
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| T |
51108763 |
tggttgatgatgtttttctgtgttttctctttcat |
51108729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 98 - 183
Target Start/End: Complemental strand, 51116719 - 51116634
Alignment:
| Q |
98 |
ttctattcccaaacctaaaactctccctactgttatgccatattcgcattcgcttttccataatactagacccataaatgtttctc |
183 |
Q |
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||||| |||||| ||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
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| T |
51116719 |
ttctactcccaagcctaaaactctccctacggttatgccatattcacattcgcttttccatagtactagacccataaatgtttctc |
51116634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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