View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_high_30 (Length: 536)
Name: NF11745_high_30
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_high_30 |
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Alignment Details
Target: chr2 (Bit Score: 479; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 14 - 520
Target Start/End: Original strand, 37618104 - 37618609
Alignment:
| Q |
14 |
agcaaaggaagtaaccaaatacctgctcttctggaattggcaaagttagactctgatatggttcagtcattacaccaaagagaattaacagaaatctgca |
113 |
Q |
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| T |
37618104 |
agcaaaggaagtaaccaaatacctgctcttctggaattggcaaagttagactctgatatggttcagtcattacaccaaagagaattagcagaaatatgca |
37618203 |
T |
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| Q |
114 |
ggtgactttatgctcaagattacactataataaaaaattgaattaagtgtgtattggatggattggttgcattacactataataacaccagatgtaaatc |
213 |
Q |
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| T |
37618204 |
ggtgactttatgctcaagattacactataataaaaaattgaattaagtgtgtattggatggattggttgcattacactataataacaccagatgtaaatc |
37618303 |
T |
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| Q |
214 |
aatattgaatatcatgtcacactaccaaaaaattaaattagcaacggatatttaaagatgaaaattttgaaatttgtctctagttctgccactaaattta |
313 |
Q |
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| T |
37618304 |
aatattgaatatcatgtcacactaccaaaaaattaaattagcaacggatatttaaagatgaaaattttgaaatttgtctctagttctgccactaaattta |
37618403 |
T |
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| Q |
314 |
gcgacaaggaattagagacaaaatttattttttcttcataaatattttgcttgtcaatttactagtgtttacttcatttttcaaattcaaataatgtatt |
413 |
Q |
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| T |
37618404 |
gcgacaaggaattagagacaaaa-ttattttttcttcataaatattttgattgtcaatttactagtgtttacttcatttttcaaattcaaataatgtatt |
37618502 |
T |
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| Q |
414 |
tcaaaattaatttctgccaataacattacaaatttcatacttctttctgtctattactaagttataagaaatactacatttcataactagtttatttgat |
513 |
Q |
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| T |
37618503 |
tcaaaattaatttctgccaataacattacaaatttcatacttctttctgtctattactatgttataagaaatgctacatttcataactagtttatttgat |
37618602 |
T |
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| Q |
514 |
ttgttta |
520 |
Q |
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| T |
37618603 |
ttgttta |
37618609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 14 - 186
Target Start/End: Original strand, 37626486 - 37626658
Alignment:
| Q |
14 |
agcaaaggaagtaaccaaatacctgctcttctggaattggcaaagttagactctgatatggttcagtcattacaccaaagagaattaacagaaatctgca |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37626486 |
agcaaaggaagtaaccaaatacctgctcttctggaattggcaaagttagactctgatatggttcagtcattacaccaaagagaattaacagaaatctgca |
37626585 |
T |
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| Q |
114 |
ggtgactttatgctcaagattacactataataaaaaattgaattaagtgtgtattggatggattggttgcatt |
186 |
Q |
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| T |
37626586 |
ggtgactttatgctcaagattacactataataaaaaattgaattaagtgtgtattgaatggattggttgcatt |
37626658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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