View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11745_high_34 (Length: 508)
Name: NF11745_high_34
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11745_high_34 |
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Alignment Details
Target: chr1 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 19 - 501
Target Start/End: Complemental strand, 6393795 - 6393313
Alignment:
| Q |
19 |
gataatccaaaccttgctgataagttcaactatcacgagagggagaccaatgtgctactcttggtaattgtgtggatgaggttgcagacaagttcttttg |
118 |
Q |
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| T |
6393795 |
gataatccaaaccttgctgataagttcaactatcacgagagggagaccaatgtgctactcttggtaattgtgtggatgaggttgcagacaagttcttttg |
6393696 |
T |
|
| Q |
119 |
gatcacaacaaaggaaggaaagtgaatgagggcaagagctattgtgagtactgcccttggtttctcaagcattgctaatttgacgagttcgattgaattt |
218 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
6393695 |
gatcacaacaaaggaaggcaagtgaatgagggcaagagctattgtgagtactgcccttggtttctcaagcattgctaatttgatgagttcgattgaattt |
6393596 |
T |
|
| Q |
219 |
ataagtaaaatttttcgtgtatttgactacatggagcatcttgtttttaatgtggtgaaaagtgtaaattacatgttcaagcatggcactgtaaaggtaa |
318 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
6393595 |
ataagtaaaatttttcatgtatttgactacatggagcatcttgtttttaatgtggtgaaaagtgtgaattacatgttcaagcatggcactgtaaaggtaa |
6393496 |
T |
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| Q |
319 |
atatttccaagaaccagccatatacaccttcaatattggaacctcatgattatatatccatttctttatccaagttacaatcaggaagaatgtgttttta |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6393495 |
atatttccaagaaccagccatatacaccttcaatattggaacctcatgattatatatccatttctttatccaagttacaatcaggaagaatgtgttttta |
6393396 |
T |
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| Q |
419 |
gctgcatgggcagtgactaccatgaaaggagaaggagctcaacttcctttcatcttgttgatcctaagactgttcctttgctt |
501 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6393395 |
gctgcatgggcagtgactaccatgaaaggagaaggagctcaacttcctttcatcttgttgatcctaagactgttcctttgctt |
6393313 |
T |
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