View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11745_high_39 (Length: 496)

Name: NF11745_high_39
Description: NF11745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11745_high_39
NF11745_high_39
[»] chr3 (3 HSPs)
chr3 (18-423)||(27663795-27664200)
chr3 (425-483)||(27664163-27664221)
chr3 (226-258)||(44806073-44806105)
[»] chr7 (2 HSPs)
chr7 (313-412)||(17129250-17129349)
chr7 (311-359)||(17164563-17164611)
[»] chr1 (2 HSPs)
chr1 (221-258)||(38572341-38572378)
chr1 (226-258)||(47335076-47335108)
[»] chr5 (1 HSPs)
chr5 (221-258)||(27511605-27511642)
[»] chr2 (1 HSPs)
chr2 (226-258)||(43792922-43792954)


Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 18 - 423
Target Start/End: Original strand, 27663795 - 27664200
Alignment:
Q  18 ttaactaccgttgcggtttaatgcaagttaactcaagttggataccaaatgatagttaacttgcactggggttaattggagaatttcgaggtgagaataa 117  Q
    |||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  27663795 ttaactaccgttgcggttcaatgcaagttaactcacgttggataccgaatgatagttaacttgcactggggttaattggggaatttcgaggtgaaaataa 27663894  T
Q  118 gcaaaaacaaaagggagaagagcaactttcataaccttaagtcgaagcataattcatttagacagactcacacaattggaaaaagtacaatggaannnnn 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||         
T  27663895 gcaaaaacaaaagggagaagagcaactttcataaccttaagtcgaaacataattcatttagacagactcacacaattggaaaatgtacaatgaaattttt 27663994  T
Q  218 nnnaatagtatttatttttaaaataattaaataaaatgtatagttattcggtgtctctaacctatttttatttgaacttgtgatcatagaacttgatcca 317  Q
       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27663995 tttaatagtatttatttttaaaataattaaataaaatgtatagttattcggtgtctctaacctatttttatttggacttgtgatcatagaacttgatcca 27664094  T
Q  318 ccttgattttataaaagttacactttataccttttacaaaattatgacgagtcatcgtgatcttgaaacgcgcactgtaataccaaacatacactaaaca 417  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  27664095 ccttgattttgtaaaagttacactttataccttttacaaaatcatgacgagtcatcgtgatcttgaaacgcgcacagtgataccaaacatacactaaaca 27664194  T
Q  418 aattac 423  Q
    ||||||    
T  27664195 aattac 27664200  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 425 - 483
Target Start/End: Original strand, 27664163 - 27664221
Alignment:
Q  425 cgcgcaccgtgatactaaacatacactaaacaaattaccgtcctatgtgcttttcctct 483  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  27664163 cgcgcacagtgataccaaacatacactaaacaaattaccgtcctatgtgcctttcctct 27664221  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 258
Target Start/End: Complemental strand, 44806105 - 44806073
Alignment:
Q  226 tatttatttttaaaataattaaataaaatgtat 258  Q
    ||||||||||| |||||||||||||||||||||    
T  44806105 tatttattttttaaataattaaataaaatgtat 44806073  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 313 - 412
Target Start/End: Original strand, 17129250 - 17129349
Alignment:
Q  313 atccaccttgattttataaaagttacactttataccttttacaaaattatgacgagtcatcgtgatcttgaaacgcgcactgtaataccaaacatacact 412  Q
    ||||||| ||||||| |||||| ||||||||||| |||||||||||| |||   ||||||||||||  || ||| ||||| || |||||||||| |||||    
T  17129250 atccaccctgattttctaaaagctacactttatagcttttacaaaatcatggtcagtcatcgtgattctggaacacgcacagtgataccaaacacacact 17129349  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 311 - 359
Target Start/End: Original strand, 17164563 - 17164611
Alignment:
Q  311 tgatccaccttgattttataaaagttacactttataccttttacaaaat 359  Q
    ||||||||| |||||||||||||| ||||||||||| ||||||||||||    
T  17164563 tgatccaccatgattttataaaagctacactttataacttttacaaaat 17164611  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 221 - 258
Target Start/End: Complemental strand, 38572378 - 38572341
Alignment:
Q  221 aatagtatttatttttaaaataattaaataaaatgtat 258  Q
    |||||| |||||||||||||||||||||||||||||||    
T  38572378 aatagtgtttatttttaaaataattaaataaaatgtat 38572341  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 258
Target Start/End: Original strand, 47335076 - 47335108
Alignment:
Q  226 tatttatttttaaaataattaaataaaatgtat 258  Q
    ||||||||||| |||||||||||||||||||||    
T  47335076 tatttattttttaaataattaaataaaatgtat 47335108  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 258
Target Start/End: Complemental strand, 27511642 - 27511605
Alignment:
Q  221 aatagtatttatttttaaaataattaaataaaatgtat 258  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  27511642 aataatatttattttttaaataattaaataaaatgtat 27511605  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 258
Target Start/End: Original strand, 43792922 - 43792954
Alignment:
Q  226 tatttatttttaaaataattaaataaaatgtat 258  Q
    ||||||||||| |||||||||||||||||||||    
T  43792922 tatttattttttaaataattaaataaaatgtat 43792954  T

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